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Sed0011187 (gene) of Chayote v1 genome

Gene IDSed0011187
OrganismSechium edule (Chayote v1)
DescriptionTy3-gypsy retrotransposon protein
Genome locationLG07:13982816..13983077
RNA-Seq ExpressionSed0011187
SyntenySed0011187
Gene Ontology termsNA
InterPro domainsNA


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAA0033167.1 ty3-gypsy retrotransposon protein [Cucumis melo var. makuwa]3.9e-0758.93Show/hide
Query:  MSVMMTNTSTSEERLAECEKKISMLLEVVKEKNDEITSLKNQIESRDVVEGNQSCK
        MSVM+TN  TSE R+AE EKK++ML++VV+E++ EI  LKN IESRD  E    CK
Subjt:  MSVMMTNTSTSEERLAECEKKISMLLEVVKEKNDEITSLKNQIESRDVVEGNQSCK

KAA0045983.1 ty3-gypsy retrotransposon protein [Cucumis melo var. makuwa]1.1e-0646.84Show/hide
Query:  MSVMMTNTSTSEERLAECEKKISMLLEVVKEKNDEITSLKNQIESRDVVE------------GNQSCKKITHNIMLQLL
        MSVMM +  TSE+R+ E EKKI+ML++ V+ +N EI SLKN IESRD  E            G Q CKK+ H I   ++
Subjt:  MSVMMTNTSTSEERLAECEKKISMLLEVVKEKNDEITSLKNQIESRDVVE------------GNQSCKKITHNIMLQLL

KAA0050373.1 ty3-gypsy retrotransposon protein [Cucumis melo var. makuwa]1.0e-0748.78Show/hide
Query:  MSVMMTNTSTSEERLAECEKKISMLLEVVKEKNDEITSLKNQIESRD--------VVEGNQSCKKITHNIMLQLLHCLFNSC
        MSVM TN  TSE+R+ E EKKI+ML++ V+E++ EI SLKN IES D         V+     K I   I  QL HC+F+SC
Subjt:  MSVMMTNTSTSEERLAECEKKISMLLEVVKEKNDEITSLKNQIESRD--------VVEGNQSCKKITHNIMLQLLHCLFNSC

TYK13602.1 ty3-gypsy retrotransposon protein [Cucumis melo var. makuwa]1.1e-0646.84Show/hide
Query:  MSVMMTNTSTSEERLAECEKKISMLLEVVKEKNDEITSLKNQIESRDVVE------------GNQSCKKITHNIMLQLL
        MSVMM +  TSE+R+ E EKKI+ML++ V+ +N EI SLKN IESRD  E            G Q CKK+ H I   ++
Subjt:  MSVMMTNTSTSEERLAECEKKISMLLEVVKEKNDEITSLKNQIESRDVVE------------GNQSCKKITHNIMLQLL

TYK29782.1 ty3-gypsy retrotransposon protein [Cucumis melo var. makuwa]3.3e-0657.14Show/hide
Query:  MSVMMTNTSTSEERLAECEKKISMLLEVVKEKNDEITSLKNQIESRDVVEGNQSCK
        MSVM+TN  TSE R+AE EKK++ML++VV+E++ EI  LKN IES D  E    CK
Subjt:  MSVMMTNTSTSEERLAECEKKISMLLEVVKEKNDEITSLKNQIESRDVVEGNQSCK

TrEMBL top hitse value%identityAlignment
A0A5A7SV13 Ty3-gypsy retrotransposon protein1.9e-0758.93Show/hide
Query:  MSVMMTNTSTSEERLAECEKKISMLLEVVKEKNDEITSLKNQIESRDVVEGNQSCK
        MSVM+TN  TSE R+AE EKK++ML++VV+E++ EI  LKN IESRD  E    CK
Subjt:  MSVMMTNTSTSEERLAECEKKISMLLEVVKEKNDEITSLKNQIESRDVVEGNQSCK

A0A5A7TQZ3 Ty3-gypsy retrotransposon protein5.6e-0746.84Show/hide
Query:  MSVMMTNTSTSEERLAECEKKISMLLEVVKEKNDEITSLKNQIESRDVVE------------GNQSCKKITHNIMLQLL
        MSVMM +  TSE+R+ E EKKI+ML++ V+ +N EI SLKN IESRD  E            G Q CKK+ H I   ++
Subjt:  MSVMMTNTSTSEERLAECEKKISMLLEVVKEKNDEITSLKNQIESRDVVE------------GNQSCKKITHNIMLQLL

A0A5D3BZH1 Ty3-gypsy retrotransposon protein5.0e-0848.78Show/hide
Query:  MSVMMTNTSTSEERLAECEKKISMLLEVVKEKNDEITSLKNQIESRD--------VVEGNQSCKKITHNIMLQLLHCLFNSC
        MSVM TN  TSE+R+ E EKKI+ML++ V+E++ EI SLKN IES D         V+     K I   I  QL HC+F+SC
Subjt:  MSVMMTNTSTSEERLAECEKKISMLLEVVKEKNDEITSLKNQIESRD--------VVEGNQSCKKITHNIMLQLLHCLFNSC

A0A5D3CQD7 Ty3-gypsy retrotransposon protein5.6e-0746.84Show/hide
Query:  MSVMMTNTSTSEERLAECEKKISMLLEVVKEKNDEITSLKNQIESRDVVE------------GNQSCKKITHNIMLQLL
        MSVMM +  TSE+R+ E EKKI+ML++ V+ +N EI SLKN IESRD  E            G Q CKK+ H I   ++
Subjt:  MSVMMTNTSTSEERLAECEKKISMLLEVVKEKNDEITSLKNQIESRDVVE------------GNQSCKKITHNIMLQLL

A0A5D3E1L5 Ty3-gypsy retrotransposon protein1.6e-0657.14Show/hide
Query:  MSVMMTNTSTSEERLAECEKKISMLLEVVKEKNDEITSLKNQIESRDVVEGNQSCK
        MSVM+TN  TSE R+AE EKK++ML++VV+E++ EI  LKN IES D  E    CK
Subjt:  MSVMMTNTSTSEERLAECEKKISMLLEVVKEKNDEITSLKNQIESRDVVEGNQSCK

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGTCCGTGATGATGACTAATACGTCTACTAGCGAAGAAAGACTAGCTGAATGTGAAAAGAAGATTAGCATGTTATTAGAAGTAGTCAAAGAAAAGAATGATGAAATCAC
TTCTCTAAAGAACCAAATCGAAAGTCGAGATGTTGTTGAGGGAAATCAATCATGCAAGAAGATCACTCACAACATAATGCTTCAATTGCTACACTGTCTGTTCAACAGTT
GCAAGATATGA
mRNA sequenceShow/hide mRNA sequence
ATGTCCGTGATGATGACTAATACGTCTACTAGCGAAGAAAGACTAGCTGAATGTGAAAAGAAGATTAGCATGTTATTAGAAGTAGTCAAAGAAAAGAATGATGAAATCAC
TTCTCTAAAGAACCAAATCGAAAGTCGAGATGTTGTTGAGGGAAATCAATCATGCAAGAAGATCACTCACAACATAATGCTTCAATTGCTACACTGTCTGTTCAACAGTT
GCAAGATATGA
Protein sequenceShow/hide protein sequence
MSVMMTNTSTSEERLAECEKKISMLLEVVKEKNDEITSLKNQIESRDVVEGNQSCKKITHNIMLQLLHCLFNSCKI