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Sed0011285 (gene) of Chayote v1 genome

Gene IDSed0011285
OrganismSechium edule (Chayote v1)
DescriptionRING-type E3 ubiquitin transferase
Genome locationLG06:40359322..40359894
RNA-Seq ExpressionSed0011285
SyntenySed0011285
Gene Ontology termsGO:0006511 - ubiquitin-dependent protein catabolic process (biological process)
GO:0016567 - protein ubiquitination (biological process)
GO:0061630 - ubiquitin protein ligase activity (molecular function)
InterPro domainsIPR001841 - Zinc finger, RING-type
IPR013083 - Zinc finger, RING/FYVE/PHD-type


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAG6595648.1 hypothetical protein SDJN03_12201, partial [Cucurbita argyrosperma subsp. sororia]3.0e-1130.7Show/hide
Query:  SSAVSVEQPNDAVELRVRLLSRNQIHKEVA-----QDVIP-------FPMHDFEA-DPAKYMTRLGMLLCRNGISAATSDMIIEVVLQYLSERLAGGEKK
        +SA S EQP   ++L++R   R      ++     Q+  P       FP+   E  DP      +  LL    + +   ++I E ++ Y +  +AGG ++
Subjt:  SSAVSVEQPNDAVELRVRLLSRNQIHKEVA-----QDVIP-------FPMHDFEA-DPAKYMTRLGMLLCRNGISAATSDMIIEVVLQYLSERLAGGEKK

Query:  RRMRIVMEVDDAIKLHW---------------TAVEITNEEDDRDPRAES--------ETCSICLDELNGG--------KREE-IEIPCGHVYHDLCIFN
             V+E+D    + W                A E T   ++  P  E           CSICL+ELNG         KREE I + CGHVYH+ CIFN
Subjt:  RRMRIVMEVDDAIKLHW---------------TAVEITNEEDDRDPRAES--------ETCSICLDELNGG--------KREE-IEIPCGHVYHDLCIFN

Query:  WLIDHCTCPLCRASL
        WL  + +CPLCRA L
Subjt:  WLIDHCTCPLCRASL

KAG6595650.1 hypothetical protein SDJN03_12203, partial [Cucurbita argyrosperma subsp. sororia]3.0e-1130.7Show/hide
Query:  SSAVSVEQPNDAVELRVRLLSRNQIHKEVA-----QDVIP-------FPMHDFEA-DPAKYMTRLGMLLCRNGISAATSDMIIEVVLQYLSERLAGGEKK
        +SA S EQP   ++L++R   R      ++     Q+  P       FP+   E  DP      +  LL    + +   ++I E ++ Y +  +AGG ++
Subjt:  SSAVSVEQPNDAVELRVRLLSRNQIHKEVA-----QDVIP-------FPMHDFEA-DPAKYMTRLGMLLCRNGISAATSDMIIEVVLQYLSERLAGGEKK

Query:  RRMRIVMEVDDAIKLHW---------------TAVEITNEEDDRDPRAES--------ETCSICLDELNGG--------KREE-IEIPCGHVYHDLCIFN
             V+E+D    + W                A E T   ++  P  E           CSICL+ELNG         KREE I + CGHVYH+ CIFN
Subjt:  RRMRIVMEVDDAIKLHW---------------TAVEITNEEDDRDPRAES--------ETCSICLDELNGG--------KREE-IEIPCGHVYHDLCIFN

Query:  WLIDHCTCPLCRASL
        WL  + +CPLCRA L
Subjt:  WLIDHCTCPLCRASL

XP_016901482.1 PREDICTED: uncharacterized protein LOC107991269 [Cucumis melo]1.1e-1054.84Show/hide
Query:  EITNEEDDRDPRAESETCSICLDELNGGKREEIEIPCGHVYHDLCIFNWLIDHCTCPLCRAS
        ++ +EE++ D       CS+CLDEL+ GKRE I IPCGHVYH+ CIF WL ++ +CPLCR S
Subjt:  EITNEEDDRDPRAESETCSICLDELNGGKREEIEIPCGHVYHDLCIFNWLIDHCTCPLCRAS

XP_023544065.1 putative RING-H2 finger protein ATL36 [Cucurbita pepo subsp. pepo]5.1e-1131.05Show/hide
Query:  QPNDAVELRV----RLLSR--NQIHKE-----VAQDVIPFPMHDFEADPAKYMTRLGMLLCRNGISAATSDMIIEVVLQYLSERLAGGEKKRRMRIVMEV
        QP    ELR+    + +SR  NQ+ ++     ++  ++P  + D +  P      L   L    IS ATSD I + +  +  E LA G+  R   I++ +
Subjt:  QPNDAVELRV----RLLSR--NQIHKE-----VAQDVIPFPMHDFEADPAKYMTRLGMLLCRNGISAATSDMIIEVVLQYLSERLAGGEKKRRMRIVMEV

Query:  D----------------DAIKLHWTAVEITNEEDDRDPRAESETCSICLDELNGGKREEIEIPCGHVYHDLCIFNWLIDHCTCPLCRASL
        D                      W    +  EE D     E+  CS+C DEL  G+ E   +PCGHV+H  CI NWL    +CPLCRA L
Subjt:  D----------------DAIKLHWTAVEITNEEDDRDPRAESETCSICLDELNGGKREEIEIPCGHVYHDLCIFNWLIDHCTCPLCRASL

XP_023544066.1 putative RING-H2 finger protein ATL36 [Cucurbita pepo subsp. pepo]3.9e-1131.05Show/hide
Query:  QPNDAVELRV----RLLSR--NQIHKE-----VAQDVIPFPMHDFEADPAKYMTRLGMLLCRNGISAATSDMIIEVVLQYLSERLAGGEKKRRMRIVMEV
        QP    ELR+    + +SR  NQ+ ++     ++  ++P  + D +  P      L   L    IS ATSD I + +  +  E LA G+  R   I++ +
Subjt:  QPNDAVELRV----RLLSR--NQIHKE-----VAQDVIPFPMHDFEADPAKYMTRLGMLLCRNGISAATSDMIIEVVLQYLSERLAGGEKKRRMRIVMEV

Query:  D----------------DAIKLHWTAVEITNEEDDRDPRAESETCSICLDELNGGKREEIEIPCGHVYHDLCIFNWLIDHCTCPLCRASL
        D                      W    +  EE D     E+  CS+C DEL  G+ E   +PCGHV+H  CI NWL    +CPLCRA L
Subjt:  D----------------DAIKLHWTAVEITNEEDDRDPRAESETCSICLDELNGGKREEIEIPCGHVYHDLCIFNWLIDHCTCPLCRASL

TrEMBL top hitse value%identityAlignment
A0A0A0K696 RING-type domain-containing protein9.3e-1165.96Show/hide
Query:  CSICLDELNGGKREEIEIPCGHVYHDLCIFNWLIDHCTCPLCRASLY
        CSICLDEL+  KRE + IPCGHVYH+ CIF WL +H +CPLCR  L+
Subjt:  CSICLDELNGGKREEIEIPCGHVYHDLCIFNWLIDHCTCPLCRASLY

A0A1S4DUZ4 E3 ubiquitin-protein ligase RNF181-like7.1e-1169.57Show/hide
Query:  CSICLDELNGGKREEIEIPCGHVYHDLCIFNWLIDHCTCPLCRASL
        CSICLDEL+  KRE I IPCGHVYH+ CIF WL +H +CPLCR  L
Subjt:  CSICLDELNGGKREEIEIPCGHVYHDLCIFNWLIDHCTCPLCRASL

A0A1S4DZR1 uncharacterized protein LOC1079912695.5e-1154.84Show/hide
Query:  EITNEEDDRDPRAESETCSICLDELNGGKREEIEIPCGHVYHDLCIFNWLIDHCTCPLCRAS
        ++ +EE++ D       CS+CLDEL+ GKRE I IPCGHVYH+ CIF WL ++ +CPLCR S
Subjt:  EITNEEDDRDPRAESETCSICLDELNGGKREEIEIPCGHVYHDLCIFNWLIDHCTCPLCRAS

A0A5A7TLM1 E3 ubiquitin-protein ligase RNF181-like protein5.5e-1154.84Show/hide
Query:  EITNEEDDRDPRAESETCSICLDELNGGKREEIEIPCGHVYHDLCIFNWLIDHCTCPLCRAS
        ++ +EE++ D       CS+CLDEL+ GKRE I IPCGHVYH+ CIF WL ++ +CPLCR S
Subjt:  EITNEEDDRDPRAESETCSICLDELNGGKREEIEIPCGHVYHDLCIFNWLIDHCTCPLCRAS

A0A5D3E1S5 E3 ubiquitin-protein ligase RNF181-like protein7.1e-1169.57Show/hide
Query:  CSICLDELNGGKREEIEIPCGHVYHDLCIFNWLIDHCTCPLCRASL
        CSICLDEL+  KRE I IPCGHVYH+ CIF WL +H +CPLCR  L
Subjt:  CSICLDELNGGKREEIEIPCGHVYHDLCIFNWLIDHCTCPLCRASL

SwissProt top hitse value%identityAlignment
O22197 Probable E3 ubiquitin-protein ligase RHC1A2.1e-0730.91Show/hide
Query:  TSDMIIEVVLQYLSERLAGGEKKR----RMRIVMEVDDAIKLHWTAVEITNEEDDRDPRAESETCSICLDELNGGKREEIEIPCGHVYHDLCIFNWLIDH
        T D      L+ L E+L+ G  +R      R  ++    IK+             R  R+    C +C DE   G  E  ++PC H+YH  CI  WL+ H
Subjt:  TSDMIIEVVLQYLSERLAGGEKKR----RMRIVMEVDDAIKLHWTAVEITNEEDDRDPRAESETCSICLDELNGGKREEIEIPCGHVYHDLCIFNWLIDH

Query:  CTCPLCRASL
         +CP+CR  L
Subjt:  CTCPLCRASL

Q9C919 Putative RING-H2 finger protein ATL192.7e-0741.67Show/hide
Query:  NEEDDRDPRAESETCSICLDELNGGKREEIEIPCGHVYHDLCIFNWLIDHCTCPLCRASL
        N E+D +   ES  C+ICL      +   +   C H+YH LCI  WL +H TCP CR  L
Subjt:  NEEDDRDPRAESETCSICLDELNGGKREEIEIPCGHVYHDLCIFNWLIDHCTCPLCRASL

Q9LRB7 E3 ubiquitin-protein ligase EL51.6e-0737.68Show/hide
Query:  TAVEITNEEDDRDPRAESETCSICLDELNGGKREEIEIPCGHVYHDLCIFNWLIDHCTCPLCRASLYFP
        TA     EE++ D   +   C++CL EL  G+       CGH +H  C+  WL  H TCPLCR ++  P
Subjt:  TAVEITNEEDDRDPRAESETCSICLDELNGGKREEIEIPCGHVYHDLCIFNWLIDHCTCPLCRASLYFP

Q9ULK6 RING finger protein 1504.6e-0723.62Show/hide
Query:  KYMTRLGMLLCRNGISAATSDMIIEVVLQYLSERLAGGEKKRRMRIVMEVDDAIKLHWTAVEI-TNEEDDRDPRAESETCSICLDELNGGKREEIE--IP
        KY++R  ++             +  +V  Y+        + R  R    + DA K   + ++I T ++ D++  ++ + C++C++   G K  ++   +P
Subjt:  KYMTRLGMLLCRNGISAATSDMIIEVVLQYLSERLAGGEKKRRMRIVMEVDDAIKLHWTAVEI-TNEEDDRDPRAESETCSICLDELNGGKREEIE--IP

Query:  CGHVYHDLCIFNWLIDHCTCPLCRASL
        C H++H  C+  WL+DH TCP+C+ ++
Subjt:  CGHVYHDLCIFNWLIDHCTCPLCRASL

Q9Y7K6 Uncharacterized RING finger protein C2A9.04c1.4e-0836.25Show/hide
Query:  VDDAIKLHWTAVEITNEEDDRDPRAESETCSICLDELN-GGKREEIEIPCGHVYHDLCIFNWLIDHCTCPLCRASLYFPH
        V  A+K  W + E  + +   D      TC IC D++N   +++  ++PCGH++   C+  WL +HCTCPLCR  +  PH
Subjt:  VDDAIKLHWTAVEITNEEDDRDPRAESETCSICLDELN-GGKREEIEIPCGHVYHDLCIFNWLIDHCTCPLCRASLYFPH

Arabidopsis top hitse value%identityAlignment
AT2G40830.1 RING-H2 finger C1A1.5e-0830.91Show/hide
Query:  TSDMIIEVVLQYLSERLAGGEKKR----RMRIVMEVDDAIKLHWTAVEITNEEDDRDPRAESETCSICLDELNGGKREEIEIPCGHVYHDLCIFNWLIDH
        T D      L+ L E+L+ G  +R      R  ++    IK+             R  R+    C +C DE   G  E  ++PC H+YH  CI  WL+ H
Subjt:  TSDMIIEVVLQYLSERLAGGEKKR----RMRIVMEVDDAIKLHWTAVEITNEEDDRDPRAESETCSICLDELNGGKREEIEIPCGHVYHDLCIFNWLIDH

Query:  CTCPLCRASL
         +CP+CR  L
Subjt:  CTCPLCRASL

AT2G40830.2 RING-H2 finger C1A1.5e-0830.91Show/hide
Query:  TSDMIIEVVLQYLSERLAGGEKKR----RMRIVMEVDDAIKLHWTAVEITNEEDDRDPRAESETCSICLDELNGGKREEIEIPCGHVYHDLCIFNWLIDH
        T D      L+ L E+L+ G  +R      R  ++    IK+             R  R+    C +C DE   G  E  ++PC H+YH  CI  WL+ H
Subjt:  TSDMIIEVVLQYLSERLAGGEKKR----RMRIVMEVDDAIKLHWTAVEITNEEDDRDPRAESETCSICLDELNGGKREEIEIPCGHVYHDLCIFNWLIDH

Query:  CTCPLCRASL
         +CP+CR  L
Subjt:  CTCPLCRASL

AT2G40830.3 RING-H2 finger C1A1.5e-0830.91Show/hide
Query:  TSDMIIEVVLQYLSERLAGGEKKR----RMRIVMEVDDAIKLHWTAVEITNEEDDRDPRAESETCSICLDELNGGKREEIEIPCGHVYHDLCIFNWLIDH
        T D      L+ L E+L+ G  +R      R  ++    IK+             R  R+    C +C DE   G  E  ++PC H+YH  CI  WL+ H
Subjt:  TSDMIIEVVLQYLSERLAGGEKKR----RMRIVMEVDDAIKLHWTAVEITNEEDDRDPRAESETCSICLDELNGGKREEIEIPCGHVYHDLCIFNWLIDH

Query:  CTCPLCRASL
         +CP+CR  L
Subjt:  CTCPLCRASL

AT3G30460.1 RING/U-box superfamily protein1.5e-0848Show/hide
Query:  CSICLDELNGGKREEIEIPCGHVYHDLCIFNWLIDHCTCPLCRASLYFPH
        C+IC +EL   +R   E+PC H YH  CI NWL +  TCPLCR ++  P+
Subjt:  CSICLDELNGGKREEIEIPCGHVYHDLCIFNWLIDHCTCPLCRASLYFPH

AT4G05350.1 RING/U-box superfamily protein6.6e-0924.24Show/hide
Query:  PNDAVELRVRLLSRNQIHKEVAQDVIPFPMHDFEADPAKYMTRLGMLLCRNGISAATSDMIIEVVLQYLSERLAGGEKKRRMRIVMEVDDAIKLHWTAVE
        P   +++ +R  S + I   +   ++ +P   +  D          +    G +  T  M   V  + +S  ++  EK  RM ++  +            
Subjt:  PNDAVELRVRLLSRNQIHKEVAQDVIPFPMHDFEADPAKYMTRLGMLLCRNGISAATSDMIIEVVLQYLSERLAGGEKKRRMRIVMEVDDAIKLHWTAVE

Query:  ITNEEDDRDPRAESETCSICLDELNGG--KREEIEIPCGHVYHDLCIFNWLIDHCTCPLCRASLY
            E+ +  + E+E CSICL+ L  G   R+   + C HV+H+ C+  WL    TCPLCR  +Y
Subjt:  ITNEEDDRDPRAESETCSICLDELNGG--KREEIEIPCGHVYHDLCIFNWLIDHCTCPLCRASLY


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGGTTGTGTTCACACTATGGTTGCTCAAGTGCGCAGCCAACAGCGGCAGCAGCGCAGTTTCGGTCGAGCAACCGAATGACGCGGTGGAACTCCGAGTGCGACTCTTAAG
CCGTAACCAAATCCACAAAGAAGTGGCTCAAGACGTAATCCCTTTCCCTATGCACGACTTCGAAGCAGATCCCGCGAAATATATGACTCGCCTCGGGATGTTGCTTTGCA
GGAACGGTATCTCCGCGGCCACCAGCGACATGATCATCGAGGTGGTCTTGCAGTACCTGAGCGAGCGTTTAGCTGGCGGAGAGAAAAAGAGGAGGATGCGTATAGTGATG
GAAGTGGACGACGCCATCAAGCTGCATTGGACCGCGGTGGAGATCACGAACGAAGAAGATGATCGAGATCCTCGCGCGGAGTCGGAAACTTGCAGTATCTGTTTGGATGA
ACTGAATGGCGGGAAAAGGGAGGAGATTGAAATTCCCTGCGGGCATGTTTACCATGATTTGTGCATTTTTAACTGGTTGATCGATCACTGTACATGCCCTTTGTGCCGAG
CCTCATTGTATTTCCCACACTGA
mRNA sequenceShow/hide mRNA sequence
ATGGTTGTGTTCACACTATGGTTGCTCAAGTGCGCAGCCAACAGCGGCAGCAGCGCAGTTTCGGTCGAGCAACCGAATGACGCGGTGGAACTCCGAGTGCGACTCTTAAG
CCGTAACCAAATCCACAAAGAAGTGGCTCAAGACGTAATCCCTTTCCCTATGCACGACTTCGAAGCAGATCCCGCGAAATATATGACTCGCCTCGGGATGTTGCTTTGCA
GGAACGGTATCTCCGCGGCCACCAGCGACATGATCATCGAGGTGGTCTTGCAGTACCTGAGCGAGCGTTTAGCTGGCGGAGAGAAAAAGAGGAGGATGCGTATAGTGATG
GAAGTGGACGACGCCATCAAGCTGCATTGGACCGCGGTGGAGATCACGAACGAAGAAGATGATCGAGATCCTCGCGCGGAGTCGGAAACTTGCAGTATCTGTTTGGATGA
ACTGAATGGCGGGAAAAGGGAGGAGATTGAAATTCCCTGCGGGCATGTTTACCATGATTTGTGCATTTTTAACTGGTTGATCGATCACTGTACATGCCCTTTGTGCCGAG
CCTCATTGTATTTCCCACACTGA
Protein sequenceShow/hide protein sequence
MVVFTLWLLKCAANSGSSAVSVEQPNDAVELRVRLLSRNQIHKEVAQDVIPFPMHDFEADPAKYMTRLGMLLCRNGISAATSDMIIEVVLQYLSERLAGGEKKRRMRIVM
EVDDAIKLHWTAVEITNEEDDRDPRAESETCSICLDELNGGKREEIEIPCGHVYHDLCIFNWLIDHCTCPLCRASLYFPH