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Sed0011366 (gene) of Chayote v1 genome

Gene IDSed0011366
OrganismSechium edule (Chayote v1)
Descriptionupstream activation factor subunit spp27-like
Genome locationLG09:994192..996711
RNA-Seq ExpressionSed0011366
SyntenySed0011366
Gene Ontology termsGO:0005634 - nucleus (cellular component)
InterPro domainsIPR003121 - SWIB/MDM2 domain
IPR019835 - SWIB domain
IPR036885 - SWIB/MDM2 domain superfamily


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAG6593744.1 hypothetical protein SDJN03_13220, partial [Cucurbita argyrosperma subsp. sororia]6.1e-4670.55Show/hide
Query:  MASGFGNGAKLFRGCKTLIDSLKSTSQTFSS-AAITSKAKPKASG-----KKPAAGEKKEVNRSSGIFKPVQVSPTLAAFLGTSECARSDAVKHIWSHIK
        MASG  NG +LFRGC+TL+DSLKST+Q +SS AA++ K + KASG     KK  AGEKKE NRS GI K VQVSP LA FLG SE +R++AVK IWS+IK
Subjt:  MASGFGNGAKLFRGCKTLIDSLKSTSQTFSS-AAITSKAKPKASG-----KKPAAGEKKEVNRSSGIFKPVQVSPTLAAFLGTSECARSDAVKHIWSHIK

Query:  LNNLQSPADKRQINCDEKLKAVFGGRDKVGFLEIAKLLSPHFVKSS
        LNNLQ+PA+KRQINCDEKLKA+F GR+ VGFLEI KLLSPHFVKSS
Subjt:  LNNLQSPADKRQINCDEKLKAVFGGRDKVGFLEIAKLLSPHFVKSS

KAG6593745.1 hypothetical protein SDJN03_13221, partial [Cucurbita argyrosperma subsp. sororia]5.1e-4569.86Show/hide
Query:  MASGFGNGAKLFRGCKTLIDSLKSTSQTFSS-AAITSKAKPKASG-----KKPAAGEKKEVNRSSGIFKPVQVSPTLAAFLGTSECARSDAVKHIWSHIK
        MASG  NG +LFRGC+TL+DSLKST+Q +SS AA++ K + KASG     KK  AGEKKE NRS GI K VQVSP LA FLG SE +R +AVK IWS+IK
Subjt:  MASGFGNGAKLFRGCKTLIDSLKSTSQTFSS-AAITSKAKPKASG-----KKPAAGEKKEVNRSSGIFKPVQVSPTLAAFLGTSECARSDAVKHIWSHIK

Query:  LNNLQSPADKRQINCDEKLKAVFGGRDKVGFLEIAKLLSPHFVKSS
        LNNLQ+PA+KRQINCDEKLKA+F GR+ VG LEI KLLSPHFVKSS
Subjt:  LNNLQSPADKRQINCDEKLKAVFGGRDKVGFLEIAKLLSPHFVKSS

XP_023000110.1 upstream activation factor subunit spp27-like [Cucurbita maxima]1.0e-4570.55Show/hide
Query:  MASGFGNGAKLFRGCKTLIDSLKSTSQTFSS-AAITSKAKPKASG-----KKPAAGEKKEVNRSSGIFKPVQVSPTLAAFLGTSECARSDAVKHIWSHIK
        MASG  NG +LFRGC+TL+DSLKST+Q +SS AA++ K + KASG     KK  AGEKKE NRS GIFK VQVSP LA FLG SE +RS+AVK IWS+IK
Subjt:  MASGFGNGAKLFRGCKTLIDSLKSTSQTFSS-AAITSKAKPKASG-----KKPAAGEKKEVNRSSGIFKPVQVSPTLAAFLGTSECARSDAVKHIWSHIK

Query:  LNNLQSPADKRQINCDEKLKAVFGGRDKVGFLEIAKLLSPHFVKSS
        LN+LQ+PA+KRQINCDEKLKA+F GR+ VG LEI KLLSPHFVKSS
Subjt:  LNNLQSPADKRQINCDEKLKAVFGGRDKVGFLEIAKLLSPHFVKSS

XP_023000111.1 upstream activation factor subunit spp27-like [Cucurbita maxima]1.0e-4570.55Show/hide
Query:  MASGFGNGAKLFRGCKTLIDSLKSTSQTFSS-AAITSKAKPKASG-----KKPAAGEKKEVNRSSGIFKPVQVSPTLAAFLGTSECARSDAVKHIWSHIK
        MASG  NG +LFRGC+TL+DSLKST+Q +SS AA++ K + KASG     KK  AGEKKE NRS GIFK VQVSP LA FLG SE +RS+AVK IWS+IK
Subjt:  MASGFGNGAKLFRGCKTLIDSLKSTSQTFSS-AAITSKAKPKASG-----KKPAAGEKKEVNRSSGIFKPVQVSPTLAAFLGTSECARSDAVKHIWSHIK

Query:  LNNLQSPADKRQINCDEKLKAVFGGRDKVGFLEIAKLLSPHFVKSS
        LN+LQ+PA+KRQINCDEKLKA+F GR+ VG LEI KLLSPHFVKSS
Subjt:  LNNLQSPADKRQINCDEKLKAVFGGRDKVGFLEIAKLLSPHFVKSS

XP_023514456.1 upstream activation factor subunit UAF30-like [Cucurbita pepo subsp. pepo]1.8e-4570.55Show/hide
Query:  MASGFGNGAKLFRGCKTLIDSLKSTSQTFSS-AAITSKAKPKASG-----KKPAAGEKKEVNRSSGIFKPVQVSPTLAAFLGTSECARSDAVKHIWSHIK
        MASG  NG +LFRGC+TL+DSLKST+Q +SS AA++ K K KASG     K   AGEKKEVNRS GIFK VQVSP LA FLG SE +R +AVK IWS+IK
Subjt:  MASGFGNGAKLFRGCKTLIDSLKSTSQTFSS-AAITSKAKPKASG-----KKPAAGEKKEVNRSSGIFKPVQVSPTLAAFLGTSECARSDAVKHIWSHIK

Query:  LNNLQSPADKRQINCDEKLKAVFGGRDKVGFLEIAKLLSPHFVKSS
        LNNLQ+PA+KRQINCDEKLKA+F GR+ VG LEI KLLS HFVKSS
Subjt:  LNNLQSPADKRQINCDEKLKAVFGGRDKVGFLEIAKLLSPHFVKSS

TrEMBL top hitse value%identityAlignment
A0A0A0KCY9 SWIB domain-containing protein1.6e-3660.69Show/hide
Query:  MASGFGNGAKLFRGCKTLIDSLKSTSQTFSSA-AITSKA--KPK---ASGKKPAAGEKKEVNRSSGIFKPVQVSPTLAAFLGTSECARSDAVKHIWSHIK
        MASG  NG + F+GC+TL+DSLKST+Q +SS   ++SK+  KP     SG+K     KK  N S G+ K  +VSPTLA FLG SE AR++AVK IW +IK
Subjt:  MASGFGNGAKLFRGCKTLIDSLKSTSQTFSSA-AITSKA--KPK---ASGKKPAAGEKKEVNRSSGIFKPVQVSPTLAAFLGTSECARSDAVKHIWSHIK

Query:  LNNLQSPADKRQINCDEKLKAVFGGRDKVGFLEIAKLLSPHFVKS
        LNNLQ+P DKRQI CD KLKA+FGGR+KVG LEI K LS HFVKS
Subjt:  LNNLQSPADKRQINCDEKLKAVFGGRDKVGFLEIAKLLSPHFVKS

A0A1S3CBA0 protein TRI1-like2.2e-4163.45Show/hide
Query:  MASGFGNGAKLFRGCKTLIDSLKSTSQTFSSA-AITSKAKPK-----ASGKKPAAGEKKEVNRSSGIFKPVQVSPTLAAFLGTSECARSDAVKHIWSHIK
        MASG  NG + FRGCKTL+DSLK T+Q +SS  A++SK+K K      SG+K  A  K++ N S GI K ++VSPTLA FLG SE +R+DA+K IWS+IK
Subjt:  MASGFGNGAKLFRGCKTLIDSLKSTSQTFSSA-AITSKAKPK-----ASGKKPAAGEKKEVNRSSGIFKPVQVSPTLAAFLGTSECARSDAVKHIWSHIK

Query:  LNNLQSPADKRQINCDEKLKAVFGGRDKVGFLEIAKLLSPHFVKS
        LNNLQ+  DKRQINCD KLKA+FGGR+KVG LEI+K LSPHFVKS
Subjt:  LNNLQSPADKRQINCDEKLKAVFGGRDKVGFLEIAKLLSPHFVKS

A0A5D3DMJ2 Protein TRI1-like2.2e-4163.45Show/hide
Query:  MASGFGNGAKLFRGCKTLIDSLKSTSQTFSSA-AITSKAKPK-----ASGKKPAAGEKKEVNRSSGIFKPVQVSPTLAAFLGTSECARSDAVKHIWSHIK
        MASG  NG + FRGCKTL+DSLK T+Q +SS  A++SK+K K      SG+K  A  K++ N S GI K ++VSPTLA FLG SE +R+DA+K IWS+IK
Subjt:  MASGFGNGAKLFRGCKTLIDSLKSTSQTFSSA-AITSKAKPK-----ASGKKPAAGEKKEVNRSSGIFKPVQVSPTLAAFLGTSECARSDAVKHIWSHIK

Query:  LNNLQSPADKRQINCDEKLKAVFGGRDKVGFLEIAKLLSPHFVKS
        LNNLQ+  DKRQINCD KLKA+FGGR+KVG LEI+K LSPHFVKS
Subjt:  LNNLQSPADKRQINCDEKLKAVFGGRDKVGFLEIAKLLSPHFVKS

A0A6J1KEZ2 upstream activation factor subunit spp27-like5.0e-4670.55Show/hide
Query:  MASGFGNGAKLFRGCKTLIDSLKSTSQTFSS-AAITSKAKPKASG-----KKPAAGEKKEVNRSSGIFKPVQVSPTLAAFLGTSECARSDAVKHIWSHIK
        MASG  NG +LFRGC+TL+DSLKST+Q +SS AA++ K + KASG     KK  AGEKKE NRS GIFK VQVSP LA FLG SE +RS+AVK IWS+IK
Subjt:  MASGFGNGAKLFRGCKTLIDSLKSTSQTFSS-AAITSKAKPKASG-----KKPAAGEKKEVNRSSGIFKPVQVSPTLAAFLGTSECARSDAVKHIWSHIK

Query:  LNNLQSPADKRQINCDEKLKAVFGGRDKVGFLEIAKLLSPHFVKSS
        LN+LQ+PA+KRQINCDEKLKA+F GR+ VG LEI KLLSPHFVKSS
Subjt:  LNNLQSPADKRQINCDEKLKAVFGGRDKVGFLEIAKLLSPHFVKSS

A0A6J1KHF5 upstream activation factor subunit spp27-like5.0e-4670.55Show/hide
Query:  MASGFGNGAKLFRGCKTLIDSLKSTSQTFSS-AAITSKAKPKASG-----KKPAAGEKKEVNRSSGIFKPVQVSPTLAAFLGTSECARSDAVKHIWSHIK
        MASG  NG +LFRGC+TL+DSLKST+Q +SS AA++ K + KASG     KK  AGEKKE NRS GIFK VQVSP LA FLG SE +RS+AVK IWS+IK
Subjt:  MASGFGNGAKLFRGCKTLIDSLKSTSQTFSS-AAITSKAKPKASG-----KKPAAGEKKEVNRSSGIFKPVQVSPTLAAFLGTSECARSDAVKHIWSHIK

Query:  LNNLQSPADKRQINCDEKLKAVFGGRDKVGFLEIAKLLSPHFVKSS
        LN+LQ+PA+KRQINCDEKLKA+F GR+ VG LEI KLLSPHFVKSS
Subjt:  LNNLQSPADKRQINCDEKLKAVFGGRDKVGFLEIAKLLSPHFVKSS

SwissProt top hitse value%identityAlignment
O74503 Upstream activation factor subunit spp273.3e-1040.51Show/hide
Query:  KPKASGKKPAAGEKKEVNRSSGIFKPVQVSPTLAAFLGTSECARSDAVKHIWSHIKLNNLQSPADKRQINCDEKLKAVF
        K K  G++    ++ +   ++ + KP+++SP LA FLG  + +R   VK +W +IK ++LQ P DKR I CD+KLK+VF
Subjt:  KPKASGKKPAAGEKKEVNRSSGIFKPVQVSPTLAAFLGTSECARSDAVKHIWSHIKLNNLQSPADKRQINCDEKLKAVF

Q05024 Protein TRI14.3e-1038.24Show/hide
Query:  TSKAKPKASGKKPAAGEKKEVNRSSGI-FKPVQVSPTLAAFLGTSECARSDAVKHIWSHIKLNNLQSPADKRQINCDEKLKAVFGGRDKVGFLEIAKLLS
        T K K K+  K     +K +   S+ I  + V +S  L  FLG+ E  R+  VK IW +IK ++LQ+P D+R+I CDEK++ +FG   K+    + KLL+
Subjt:  TSKAKPKASGKKPAAGEKKEVNRSSGI-FKPVQVSPTLAAFLGTSECARSDAVKHIWSHIKLNNLQSPADKRQINCDEKLKAVFGGRDKVGFLEIAKLLS

Query:  PH
         H
Subjt:  PH

Q08747 Upstream activation factor subunit UAF307.3e-1035.23Show/hide
Query:  EKKEVNRSSGIFKPVQVSPTLAAFLGTSECARSDAVKHIWSHIKLNNLQSPADKRQINCDEKLKAVFGGRDKVGFLEIAKLLSPHFVK
        +K  V++S    + V +S +LA+ LG  E  R++ V+ +W++IK +NLQ+P +K++I CDEKL+ + G        E+ K+L+ H  +
Subjt:  EKKEVNRSSGIFKPVQVSPTLAAFLGTSECARSDAVKHIWSHIKLNNLQSPADKRQINCDEKLKAVFGGRDKVGFLEIAKLLSPHFVK

Arabidopsis top hitse value%identityAlignment
AT1G31760.1 SWIB/MDM2 domain superfamily protein3.8e-2254.95Show/hide
Query:  AGEKKEVNRSSGIFKPVQVSPTLAAFLGTSECARSDAVKHIWSHIKLNNLQSPADKRQINCDEKLKAVFGGRDKVGFLEIAKLLSPHFVKS
        AGE K      GIFK   VS  LA+F G  E  R  A+K +W ++KL+NLQ+PA+K++I+CD+KLK +F G+DKVG  EI KLLSPHF KS
Subjt:  AGEKKEVNRSSGIFKPVQVSPTLAAFLGTSECARSDAVKHIWSHIKLNNLQSPADKRQINCDEKLKAVFGGRDKVGFLEIAKLLSPHFVKS

AT2G14880.1 SWIB/MDM2 domain superfamily protein2.1e-2042.06Show/hide
Query:  FRGCKTLIDSLKSTSQTFSSAAITSKAKPKASGKKPAAGEKKEVNRSSGIFKPVQVSPTLAAFLGTSECARSDAVKHIWSHIKLNNLQSPADKRQINCDE
        FR   T + SL+  S   +   +           +P A  K+      GI KP  VSP +   +   E AR+ A+K IW++IK ++LQ P +KR+I CDE
Subjt:  FRGCKTLIDSLKSTSQTFSSAAITSKAKPKASGKKPAAGEKKEVNRSSGIFKPVQVSPTLAAFLGTSECARSDAVKHIWSHIKLNNLQSPADKRQINCDE

Query:  KLKAVFGGRDKVGFLEIAKLLSPHFV
        KLK +F GRD+VGFLEIAKL+ PHF+
Subjt:  KLKAVFGGRDKVGFLEIAKLLSPHFV

AT2G35605.1 SWIB/MDM2 domain superfamily protein1.6e-2357.95Show/hide
Query:  KEVNRSSGIFKPVQVSPTLAAFLGTSECARSDAVKHIWSHIKLNNLQSPADKRQINCDEKLKAVFGGRDKVGFLEIAKLLSPHFVKSS
        K   + +GI K V VS  LA F+G +E +R+ AVK IW +IKLNNLQ+P +KR+I CDE+LK +F G+D VGFLEI+KLLS HF KS+
Subjt:  KEVNRSSGIFKPVQVSPTLAAFLGTSECARSDAVKHIWSHIKLNNLQSPADKRQINCDEKLKAVFGGRDKVGFLEIAKLLSPHFVKSS

AT3G03590.1 SWIB/MDM2 domain superfamily protein7.0e-3254.35Show/hide
Query:  AKLFRGCKTLIDSLKSTSQTFSSAAITSK--AKPKASGK-KPAA---GEKKEVNRSSGIFKPVQVSPTLAAFLGTSECARSDAVKHIWSHIKLNNLQSPA
        A +FRG ++L+      + +  SA  T K  AKPKA  K KP A      K+  RS+GIFK   VSP LA FLGT E +R+DA+K IW++IK ++LQ+PA
Subjt:  AKLFRGCKTLIDSLKSTSQTFSSAAITSK--AKPKASGK-KPAA---GEKKEVNRSSGIFKPVQVSPTLAAFLGTSECARSDAVKHIWSHIKLNNLQSPA

Query:  DKRQINCDEKLKAVFGGRDKVGFLEIAKLLSPHFVKSS
        DKR+I CDE LK +F G+DKVGFLEI+KLLSPHFVK++
Subjt:  DKRQINCDEKLKAVFGGRDKVGFLEIAKLLSPHFVKSS

AT4G34290.1 SWIB/MDM2 domain superfamily protein2.0e-1846.67Show/hide
Query:  AITSKAKPKASGKKPAAGEKKEVNRSSGIFKPVQVSPTLAAFLGTSECARSDAVKHIWSHIKLNNLQSPADKRQINCDEKLKAVFGGRDKVGFLEIAKLL
        A+TS A   A+   P    K    R  GI KP  VS  +   +G  E  R+ A+K IW++IK ++LQ P +KR I CDEKLK +F G+++VGFLEIAKL+
Subjt:  AITSKAKPKASGKKPAAGEKKEVNRSSGIFKPVQVSPTLAAFLGTSECARSDAVKHIWSHIKLNNLQSPADKRQINCDEKLKAVFGGRDKVGFLEIAKLL

Query:  SPHFV
         PHF+
Subjt:  SPHFV


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGGCGTCTGGTTTCGGCAATGGCGCCAAGTTATTTAGAGGTTGCAAAACCCTAATCGATTCACTCAAATCCACCTCTCAAACTTTCTCCTCTGCTGCGATCACCTCCAA
AGCTAAGCCGAAAGCTTCCGGCAAGAAACCGGCGGCCGGAGAGAAGAAGGAGGTGAACCGCTCGTCGGGGATTTTCAAGCCGGTCCAAGTTTCTCCGACTCTCGCCGCCT
TTCTTGGCACGTCTGAGTGTGCCCGTTCTGATGCGGTAAAGCACATATGGTCCCATATCAAGCTGAATAACCTCCAGAGCCCAGCTGACAAGAGGCAGATCAATTGTGAT
GAAAAGCTAAAGGCTGTATTTGGTGGAAGAGACAAAGTGGGGTTCTTAGAGATTGCAAAATTGCTATCCCCTCATTTTGTGAAGTCTAGTTAA
mRNA sequenceShow/hide mRNA sequence
GTAGACATTGCTTAATAATTATCGTAAAAATAGACATTTTACAAATTGGCCCTCATAATAGGGCCCAAATCAAGGGCGGCCCATTGAATTGGGCCCCCAACTTCTCCCAA
TCAATCTTAAACCCTCAATTCTCCATTTCAATTTTCAATCACAGCAAAGCAAAAGCGGCAAAAACCCTACCGATCGTCGTCTTCCTCGCAGCAAAATGGCGTCTGGTTTC
GGCAATGGCGCCAAGTTATTTAGAGGTTGCAAAACCCTAATCGATTCACTCAAATCCACCTCTCAAACTTTCTCCTCTGCTGCGATCACCTCCAAAGCTAAGCCGAAAGC
TTCCGGCAAGAAACCGGCGGCCGGAGAGAAGAAGGAGGTGAACCGCTCGTCGGGGATTTTCAAGCCGGTCCAAGTTTCTCCGACTCTCGCCGCCTTTCTTGGCACGTCTG
AGTGTGCCCGTTCTGATGCGGTAAAGCACATATGGTCCCATATCAAGCTGAATAACCTCCAGAGCCCAGCTGACAAGAGGCAGATCAATTGTGATGAAAAGCTAAAGGCT
GTATTTGGTGGAAGAGACAAAGTGGGGTTCTTAGAGATTGCAAAATTGCTATCCCCTCATTTTGTGAAGTCTAGTTAATTAACCAATCAAGCTACTATCCAGTGTATGCT
TTGACTTAGTTGTTCTAGCAGTTCTTGTGTTGTATTTGGCCAATCTTATGACTTCAGTGAACTCTTTGGTTTGCCTTTCATCTAAGAAAAAAAAAGGTTCTTACTTGACC
ATTGTTGTTGATATTACTTGGCTTTAAAATGCTCTACATTCTTAGTCTCCTTGGAAGAACTAGAAGACAAGAAAAATCCTACCTACTTAGTTTTGAGAACTAAAAATGTT
AAACTCTCATTTGATAACTGTCTCATTCGTTTGAATCCCTCGA
Protein sequenceShow/hide protein sequence
MASGFGNGAKLFRGCKTLIDSLKSTSQTFSSAAITSKAKPKASGKKPAAGEKKEVNRSSGIFKPVQVSPTLAAFLGTSECARSDAVKHIWSHIKLNNLQSPADKRQINCD
EKLKAVFGGRDKVGFLEIAKLLSPHFVKSS