; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; CuGenDBv2

Sed0011392 (gene) of Chayote v1 genome

Gene IDSed0011392
OrganismSechium edule (Chayote v1)
DescriptionRetrovirus-related Pol polyprotein from transposon TNT 1-94
Genome locationLG07:34193489..34196006
RNA-Seq ExpressionSed0011392
SyntenySed0011392
Gene Ontology termsNA
InterPro domainsNA


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAA0026100.1 uncharacterized protein E6C27_scaffold19G00360 [Cucumis melo var. makuwa]5.8e-2434.19Show/hide
Query:  SNPKFNTPPLNQLLTQITTIKLD----------------PYRLIGHLSGEDQCPPKFLPTAIGPNEPTTVGG----LMPASGLTRRTAS-----------
        S+  F+ PPLNQ+L Q+ T+KLD                 Y+L GHL+GE  CP  F+ +A   N   T  G    +  +S +T R  +           
Subjt:  SNPKFNTPPLNQLLTQITTIKLD----------------PYRLIGHLSGEDQCPPKFLPTAIGPNEPTTVGG----LMPASGLTRRTAS-----------

Query:  ----------------------------------------GEGDYLRQTFQQCRNGFQKMADYLRIMKTHADNLELAGSSIPVRSLISQVLLGLDEEYNA
                                                 E D+LRQ  Q  R G  KM +YL +MKT+ DNL   GS +P R+LISQVLLGLDE YN 
Subjt:  ----------------------------------------GEGDYLRQTFQQCRNGFQKMADYLRIMKTHADNLELAGSSIPVRSLISQVLLGLDEEYNA

Query:  VVANAQGRTDLTWYGLQTELLMFEKRLEQQNSHK
        V+   QG+ D++W  +Q++LL+FEK L+ QN+ K
Subjt:  VVANAQGRTDLTWYGLQTELLMFEKRLEQQNSHK

XP_022151683.1 uncharacterized protein LOC111019598 [Momordica charantia]3.3e-2736.33Show/hide
Query:  SNPKFNTPPLNQLLTQITTIKLD----------------PYRLIGHLSGEDQCPPKFLPTAIGPNEPTTVGG----------------------------
        S   F +PPLNQLL QIT+IK+D                 Y+L  +L+G+  CPP  L   +  + PT + G                            
Subjt:  SNPKFNTPPLNQLLTQITTIKLD----------------PYRLIGHLSGEDQCPPKFLPTAIGPNEPTTVGG----------------------------

Query:  --------LMPASGLTRR-------------TASGEGDYLRQTFQQCRNGFQKMADYLRIMKTHADNLELAGSSIPVRSLISQVLLGLDEEYNAVVANAQ
                 M   G +                +  E DYL+Q FQQ   G  +M +YL++MK+HADNL LAGSS+ VR L+SQVL GLDEEYN +V   Q
Subjt:  --------LMPASGLTRR-------------TASGEGDYLRQTFQQCRNGFQKMADYLRIMKTHADNLELAGSSIPVRSLISQVLLGLDEEYNAVVANAQ

Query:  GRTDLTWYGLQTELLMFEKRLEQQNSHKT---ISFNQTASANMVN
        G+ +L+W  +  ELL +EKRLE QNS K+   I+  QT S N V+
Subjt:  GRTDLTWYGLQTELLMFEKRLEQQNSHKT---ISFNQTASANMVN

XP_038887140.1 uncharacterized protein LOC120077331 [Benincasa hispida]8.1e-2658.93Show/hide
Query:  EGDYLRQTFQQCRNGFQKMADYLRIMKTHADNLELAGSSIPVRSLISQVLLGLDEEYNAVVANAQGRTDLTWYGLQTELLMFEKRLEQQNSHK-TISFNQ
        E DYLR  FQ+ R G  KM DYLR MK +ADNLE AGS +P R+L+SQVLLGLDEEYNA+VA  QGR D+ W  +Q ELL++E+RLE Q++ K T+ FNQ
Subjt:  EGDYLRQTFQQCRNGFQKMADYLRIMKTHADNLELAGSSIPVRSLISQVLLGLDEEYNAVVANAQGRTDLTWYGLQTELLMFEKRLEQQNSHK-TISFNQ

Query:  TA--SANMVNVK
         +  S NM N +
Subjt:  TA--SANMVNVK

XP_038905161.1 uncharacterized protein LOC120091275 isoform X1 [Benincasa hispida]6.8e-2557.14Show/hide
Query:  EGDYLRQTFQQCRNGFQKMADYLRIMKTHADNLELAGSSIPVRSLISQVLLGLDEEYNAVVANAQGRTDLTWYGLQTELLMFEKRLEQQNSHK-TISFNQ
        E DYLR  FQ  R G  KM +YL+ MK + DNLE AGS +P R+L+SQVLLGLDEEYNA+VA  QGR D++W  +Q+ELL++E+RLE Q++ K T+ FNQ
Subjt:  EGDYLRQTFQQCRNGFQKMADYLRIMKTHADNLELAGSSIPVRSLISQVLLGLDEEYNAVVANAQGRTDLTWYGLQTELLMFEKRLEQQNSHK-TISFNQ

Query:  --TASANMVNVK
           AS NM N +
Subjt:  --TASANMVNVK

XP_038905164.1 uncharacterized protein LOC120091275 isoform X4 [Benincasa hispida]6.8e-2557.14Show/hide
Query:  EGDYLRQTFQQCRNGFQKMADYLRIMKTHADNLELAGSSIPVRSLISQVLLGLDEEYNAVVANAQGRTDLTWYGLQTELLMFEKRLEQQNSHK-TISFNQ
        E DYLR  FQ  R G  KM +YL+ MK + DNLE AGS +P R+L+SQVLLGLDEEYNA+VA  QGR D++W  +Q+ELL++E+RLE Q++ K T+ FNQ
Subjt:  EGDYLRQTFQQCRNGFQKMADYLRIMKTHADNLELAGSSIPVRSLISQVLLGLDEEYNAVVANAQGRTDLTWYGLQTELLMFEKRLEQQNSHK-TISFNQ

Query:  --TASANMVNVK
           AS NM N +
Subjt:  --TASANMVNVK

TrEMBL top hitse value%identityAlignment
A0A0A0LXB7 Uncharacterized protein1.2e-2255.36Show/hide
Query:  EGDYLRQTFQQCRNGFQKMADYLRIMKTHADNLELAGSSIPVRSLISQVLLGLDEEYNAVVANAQGRTDLTWYGLQTELLMFEKRLEQQNSHKTI-SFNQ
        E D+LRQTFQ  R G   M DYLRIMKT+ADNL  A S IP R+LISQVLLGLDE YN V+   QG+ +++W  +Q++LL+FEKRL+ QNS K I +  Q
Subjt:  EGDYLRQTFQQCRNGFQKMADYLRIMKTHADNLELAGSSIPVRSLISQVLLGLDEEYNAVVANAQGRTDLTWYGLQTELLMFEKRLEQQNSHKTI-SFNQ

Query:  TASANMVNVKES
         A+ NM   + +
Subjt:  TASANMVNVKES

A0A5A7SIT7 Uncharacterized protein2.8e-2434.19Show/hide
Query:  SNPKFNTPPLNQLLTQITTIKLD----------------PYRLIGHLSGEDQCPPKFLPTAIGPNEPTTVGG----LMPASGLTRRTAS-----------
        S+  F+ PPLNQ+L Q+ T+KLD                 Y+L GHL+GE  CP  F+ +A   N   T  G    +  +S +T R  +           
Subjt:  SNPKFNTPPLNQLLTQITTIKLD----------------PYRLIGHLSGEDQCPPKFLPTAIGPNEPTTVGG----LMPASGLTRRTAS-----------

Query:  ----------------------------------------GEGDYLRQTFQQCRNGFQKMADYLRIMKTHADNLELAGSSIPVRSLISQVLLGLDEEYNA
                                                 E D+LRQ  Q  R G  KM +YL +MKT+ DNL   GS +P R+LISQVLLGLDE YN 
Subjt:  ----------------------------------------GEGDYLRQTFQQCRNGFQKMADYLRIMKTHADNLELAGSSIPVRSLISQVLLGLDEEYNA

Query:  VVANAQGRTDLTWYGLQTELLMFEKRLEQQNSHK
        V+   QG+ D++W  +Q++LL+FEK L+ QN+ K
Subjt:  VVANAQGRTDLTWYGLQTELLMFEKRLEQQNSHK

A0A5D3C373 Retrovirus-related Pol polyprotein from transposon TNT 1-941.0e-1848.65Show/hide
Query:  EGDYLRQTFQQCRNGFQKMADYLRIMKTHADNLELAGSSIPVRSLISQVLLGLDEEYNAVVANAQGRTDLTWYGLQTELLMFEKRLEQQNSHKTISFNQT
        E D+LRQ FQ  R       DYLRIMKT++D L  AGS +P R+ ISQ LLGLDE YN V+A  QG+ +++W  +Q+ELL FEKRLE Q++ K     + 
Subjt:  EGDYLRQTFQQCRNGFQKMADYLRIMKTHADNLELAGSSIPVRSLISQVLLGLDEEYNAVVANAQGRTDLTWYGLQTELLMFEKRLEQQNSHKTISFNQT

Query:  ASANMVNVKES
           N+VN+ ++
Subjt:  ASANMVNVKES

A0A6J1D5J0 uncharacterized protein LOC1110175011.9e-2054.46Show/hide
Query:  ASGEGDYLRQTFQQCRNGFQKMADYLRIMKTHADNLELAGSSIPVRSLISQVLLGLDEEYNAVVANAQGRTDLTWYGLQTELLMFEKRLEQQNSHKTISF
        +  E DYLRQ FQQ R G  KM D+LR+MK+HADNL  AGS +P RSLISQVLLGLDEEYN VVA  QG+  ++W  +Q E        ++QN +    F
Subjt:  ASGEGDYLRQTFQQCRNGFQKMADYLRIMKTHADNLELAGSSIPVRSLISQVLLGLDEEYNAVVANAQGRTDLTWYGLQTELLMFEKRLEQQNSHKTISF

Query:  N
        N
Subjt:  N

A0A6J1DCW4 uncharacterized protein LOC1110195981.6e-2736.33Show/hide
Query:  SNPKFNTPPLNQLLTQITTIKLD----------------PYRLIGHLSGEDQCPPKFLPTAIGPNEPTTVGG----------------------------
        S   F +PPLNQLL QIT+IK+D                 Y+L  +L+G+  CPP  L   +  + PT + G                            
Subjt:  SNPKFNTPPLNQLLTQITTIKLD----------------PYRLIGHLSGEDQCPPKFLPTAIGPNEPTTVGG----------------------------

Query:  --------LMPASGLTRR-------------TASGEGDYLRQTFQQCRNGFQKMADYLRIMKTHADNLELAGSSIPVRSLISQVLLGLDEEYNAVVANAQ
                 M   G +                +  E DYL+Q FQQ   G  +M +YL++MK+HADNL LAGSS+ VR L+SQVL GLDEEYN +V   Q
Subjt:  --------LMPASGLTRR-------------TASGEGDYLRQTFQQCRNGFQKMADYLRIMKTHADNLELAGSSIPVRSLISQVLLGLDEEYNAVVANAQ

Query:  GRTDLTWYGLQTELLMFEKRLEQQNSHKT---ISFNQTASANMVN
        G+ +L+W  +  ELL +EKRLE QNS K+   I+  QT S N V+
Subjt:  GRTDLTWYGLQTELLMFEKRLEQQNSHKT---ISFNQTASANMVN

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGAATTTTAAGTTTCTAAATGAAAACTTATTTAATCAACTTGTTACTAGGACATTTTTTGGAAAAAACATGGCCAACGCCTATTCAAACCCTAAGTTCAATACTCCACC
ATTAAATCAACTCCTCACCCAAATAACCACCATTAAATTAGATCCCTATAGGTTAATAGGTCATTTGAGTGGGGAGGATCAATGTCCTCCGAAATTTTTACCCACAGCCA
TAGGTCCAAATGAACCCACAACTGTAGGTGGGTTGATGCCAGCGTCAGGTCTGACGCGCAGAACCGCGTCAGGAGAGGGAGATTATCTTCGTCAAACTTTTCAACAGTGC
AGAAACGGTTTTCAAAAGATGGCTGATTATTTGAGGATCATGAAGACACATGCTGACAACCTAGAGCTTGCTGGGAGTTCGATTCCTGTTCGGTCATTAATCTCCCAAGT
ATTGTTGGGACTTGATGAAGAGTATAATGCCGTAGTAGCAAACGCACAGGGAAGAACTGATCTCACTTGGTATGGATTGCAGACTGAACTCCTCATGTTTGAGAAACGGT
TAGAGCAACAAAATTCTCACAAAACGATCTCGTTTAATCAGACAGCTTCGGCAAATATGGTAAATGTGAAAGAAAGTATGCCTTAG
mRNA sequenceShow/hide mRNA sequence
ATGAATTTTAAGTTTCTAAATGAAAACTTATTTAATCAACTTGTTACTAGGACATTTTTTGGAAAAAACATGGCCAACGCCTATTCAAACCCTAAGTTCAATACTCCACC
ATTAAATCAACTCCTCACCCAAATAACCACCATTAAATTAGATCCCTATAGGTTAATAGGTCATTTGAGTGGGGAGGATCAATGTCCTCCGAAATTTTTACCCACAGCCA
TAGGTCCAAATGAACCCACAACTGTAGGTGGGTTGATGCCAGCGTCAGGTCTGACGCGCAGAACCGCGTCAGGAGAGGGAGATTATCTTCGTCAAACTTTTCAACAGTGC
AGAAACGGTTTTCAAAAGATGGCTGATTATTTGAGGATCATGAAGACACATGCTGACAACCTAGAGCTTGCTGGGAGTTCGATTCCTGTTCGGTCATTAATCTCCCAAGT
ATTGTTGGGACTTGATGAAGAGTATAATGCCGTAGTAGCAAACGCACAGGGAAGAACTGATCTCACTTGGTATGGATTGCAGACTGAACTCCTCATGTTTGAGAAACGGT
TAGAGCAACAAAATTCTCACAAAACGATCTCGTTTAATCAGACAGCTTCGGCAAATATGGTAAATGTGAAAGAAAGTATGCCTTAG
Protein sequenceShow/hide protein sequence
MNFKFLNENLFNQLVTRTFFGKNMANAYSNPKFNTPPLNQLLTQITTIKLDPYRLIGHLSGEDQCPPKFLPTAIGPNEPTTVGGLMPASGLTRRTASGEGDYLRQTFQQC
RNGFQKMADYLRIMKTHADNLELAGSSIPVRSLISQVLLGLDEEYNAVVANAQGRTDLTWYGLQTELLMFEKRLEQQNSHKTISFNQTASANMVNVKESMP