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Sed0011418 (gene) of Chayote v1 genome

Gene IDSed0011418
OrganismSechium edule (Chayote v1)
DescriptionE3 ubiquitin-protein ligase arkadia-A, putative
Genome locationLG10:744922..745531
RNA-Seq ExpressionSed0011418
SyntenySed0011418
Gene Ontology termsNA
InterPro domainsNA


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAA0052530.1 putative E3 ubiquitin-protein ligase arkadia-A [Cucumis melo var. makuwa]2.3e-3769.47Show/hide
Query:  TTTDPDNTNLQNAPSLKLSRHSSSARDSDAGDDIRYTSLKDILVNFPSYG--SDLNDFNPDNISIRNDLVKRAASAYIRSSEILISRNQSSSAGYGGVWR
        TTT  D+  LQN PS KLSR+SSSARDSDAGDD+RYTSLKDIL+N PSY   +D N+FN  NISIRN+LVKRAASAY++S+ IL+SRN+S   G+ G W 
Subjt:  TTTDPDNTNLQNAPSLKLSRHSSSARDSDAGDDIRYTSLKDILVNFPSYG--SDLNDFNPDNISIRNDLVKRAASAYIRSSEILISRNQSSSAGYGGVWR

Query:  RLRIKLAALRSRFCDCDCFQHIFGFFPCALD
        RLRIKLAALRSR+  CDCF  IFGFF  ALD
Subjt:  RLRIKLAALRSRFCDCDCFQHIFGFFPCALD

KAE8647751.1 hypothetical protein Csa_003767 [Cucumis sativus]8.6e-3270.27Show/hide
Query:  DNTNLQNAPSLKLSRHSSSARDSDAGDDIRYTSLKDILVNFPSYG--SDLNDFNPDNISIRNDLVKRAASAYIRSSEILISRNQSSSAGYGGVWRRLRIK
        D   LQN PS KLSR+SSSARDSDA DD+RYTSLKDIL+N PSY   +D N+FN  NISIRN+LVKRAASAY++S+ IL+SRN+S   G+ G W RLRIK
Subjt:  DNTNLQNAPSLKLSRHSSSARDSDAGDDIRYTSLKDILVNFPSYG--SDLNDFNPDNISIRNDLVKRAASAYIRSSEILISRNQSSSAGYGGVWRRLRIK

Query:  LAALRSRFCDC
        LAALRSR+CDC
Subjt:  LAALRSRFCDC

XP_022925985.1 uncharacterized protein LOC111433238 [Cucurbita moschata]5.0e-3263.57Show/hide
Query:  TTNTTTDPDNTNLQNAPSLKLSRHSSSARDSDAGDDIRYTSLKDILVNFPSYG--SDLNDFNPDNISIRNDLVKRAASAYIRSSEILISRNQSSSAGYGG
        TT TT   D   LQN PS KLSR+SS+ RDSDAGDD+RYTSLKDIL+N PSY   ++ N+FN  NI+IRN+LVKRAASAY++S+ IL+ RN+S   G+  
Subjt:  TTNTTTDPDNTNLQNAPSLKLSRHSSSARDSDAGDDIRYTSLKDILVNFPSYG--SDLNDFNPDNISIRNDLVKRAASAYIRSSEILISRNQSSSAGYGG

Query:  VWRRLRIKLAALRSRFCDCDCFQHIFGFF
         W RLRIKLAALRSR+  CDCF   FGFF
Subjt:  VWRRLRIKLAALRSRFCDCDCFQHIFGFF

XP_022977989.1 uncharacterized protein LOC111478115 [Cucurbita maxima]5.0e-3263.57Show/hide
Query:  TTNTTTDPDNTNLQNAPSLKLSRHSSSARDSDAGDDIRYTSLKDILVNFPSYG--SDLNDFNPDNISIRNDLVKRAASAYIRSSEILISRNQSSSAGYGG
        TT T T  D   LQN PS KLSR+SS+ RDSDAGDD+RYTSLKDIL+N PSY   ++ N+FN  NI+IRN+LVKRAASAY++S+ IL+ RN+S   G+  
Subjt:  TTNTTTDPDNTNLQNAPSLKLSRHSSSARDSDAGDDIRYTSLKDILVNFPSYG--SDLNDFNPDNISIRNDLVKRAASAYIRSSEILISRNQSSSAGYGG

Query:  VWRRLRIKLAALRSRFCDCDCFQHIFGFF
         W RLRIKLAALRSR+  CDCF   FGFF
Subjt:  VWRRLRIKLAALRSRFCDCDCFQHIFGFF

XP_023544918.1 uncharacterized protein LOC111804374 [Cucurbita pepo subsp. pepo]5.0e-3263.57Show/hide
Query:  TTNTTTDPDNTNLQNAPSLKLSRHSSSARDSDAGDDIRYTSLKDILVNFPSYG--SDLNDFNPDNISIRNDLVKRAASAYIRSSEILISRNQSSSAGYGG
        TT TT   D   LQN PS KLSR+SS+ RDSDAGDD+RYTSLKDIL+N PSY   ++ N+FN  NI+IRN+LVKRAASAY++S+ IL+ RN+S   G+  
Subjt:  TTNTTTDPDNTNLQNAPSLKLSRHSSSARDSDAGDDIRYTSLKDILVNFPSYG--SDLNDFNPDNISIRNDLVKRAASAYIRSSEILISRNQSSSAGYGG

Query:  VWRRLRIKLAALRSRFCDCDCFQHIFGFF
         W RLRIKLAALRSR+  CDCF   FGFF
Subjt:  VWRRLRIKLAALRSRFCDCDCFQHIFGFF

TrEMBL top hitse value%identityAlignment
A0A0A0KKP9 Uncharacterized protein9.6e-3768.42Show/hide
Query:  TNTTTDPDNTNLQNAPSLKLSRHSSSARDSDAGDDIRYTSLKDILVNFPSYG--SDLNDFNPDNISIRNDLVKRAASAYIRSSEILISRNQSSSAGYGGV
        T TTT  D   LQN PS KLSR+SSSARDSDA DD+RYTSLKDIL+N PSY   +D N+FN  NISIRN+LVKRAASAY++S+ IL+SRN+S   G+ G 
Subjt:  TNTTTDPDNTNLQNAPSLKLSRHSSSARDSDAGDDIRYTSLKDILVNFPSYG--SDLNDFNPDNISIRNDLVKRAASAYIRSSEILISRNQSSSAGYGGV

Query:  WRRLRIKLAALRSRFCDCDCFQHIFGFFPCALD
        W RLRIKLAALRSR+  CDCF  IFGFF  ALD
Subjt:  WRRLRIKLAALRSRFCDCDCFQHIFGFFPCALD

A0A5A7UBK0 Putative E3 ubiquitin-protein ligase arkadia-A1.1e-3769.47Show/hide
Query:  TTTDPDNTNLQNAPSLKLSRHSSSARDSDAGDDIRYTSLKDILVNFPSYG--SDLNDFNPDNISIRNDLVKRAASAYIRSSEILISRNQSSSAGYGGVWR
        TTT  D+  LQN PS KLSR+SSSARDSDAGDD+RYTSLKDIL+N PSY   +D N+FN  NISIRN+LVKRAASAY++S+ IL+SRN+S   G+ G W 
Subjt:  TTTDPDNTNLQNAPSLKLSRHSSSARDSDAGDDIRYTSLKDILVNFPSYG--SDLNDFNPDNISIRNDLVKRAASAYIRSSEILISRNQSSSAGYGGVWR

Query:  RLRIKLAALRSRFCDCDCFQHIFGFFPCALD
        RLRIKLAALRSR+  CDCF  IFGFF  ALD
Subjt:  RLRIKLAALRSRFCDCDCFQHIFGFFPCALD

A0A6J1CYB8 uncharacterized protein LOC1110157126.9e-2765.45Show/hide
Query:  TDPDNTNLQNAPSLKLSRHSSSARDSDAGDDIRYTSLKDILVNFPSYG--SDLNDFNPDNISIRNDLVKRAASAYIRSSEILISRNQSSSAGYGGVWRRL
        T  ++  LQN PS KLSR+SS ARDSDAGDD+RY SLKDIL+N PSY   +D NDFN  NISIRN+LVKRAASAY++S+ IL+SRN+S    +   W RL
Subjt:  TDPDNTNLQNAPSLKLSRHSSSARDSDAGDDIRYTSLKDILVNFPSYG--SDLNDFNPDNISIRNDLVKRAASAYIRSSEILISRNQSSSAGYGGVWRRL

Query:  RIKLAALRSR
        R KLAALRSR
Subjt:  RIKLAALRSR

A0A6J1EJR7 uncharacterized protein LOC1114332382.4e-3263.57Show/hide
Query:  TTNTTTDPDNTNLQNAPSLKLSRHSSSARDSDAGDDIRYTSLKDILVNFPSYG--SDLNDFNPDNISIRNDLVKRAASAYIRSSEILISRNQSSSAGYGG
        TT TT   D   LQN PS KLSR+SS+ RDSDAGDD+RYTSLKDIL+N PSY   ++ N+FN  NI+IRN+LVKRAASAY++S+ IL+ RN+S   G+  
Subjt:  TTNTTTDPDNTNLQNAPSLKLSRHSSSARDSDAGDDIRYTSLKDILVNFPSYG--SDLNDFNPDNISIRNDLVKRAASAYIRSSEILISRNQSSSAGYGG

Query:  VWRRLRIKLAALRSRFCDCDCFQHIFGFF
         W RLRIKLAALRSR+  CDCF   FGFF
Subjt:  VWRRLRIKLAALRSRFCDCDCFQHIFGFF

A0A6J1ISV4 uncharacterized protein LOC1114781152.4e-3263.57Show/hide
Query:  TTNTTTDPDNTNLQNAPSLKLSRHSSSARDSDAGDDIRYTSLKDILVNFPSYG--SDLNDFNPDNISIRNDLVKRAASAYIRSSEILISRNQSSSAGYGG
        TT T T  D   LQN PS KLSR+SS+ RDSDAGDD+RYTSLKDIL+N PSY   ++ N+FN  NI+IRN+LVKRAASAY++S+ IL+ RN+S   G+  
Subjt:  TTNTTTDPDNTNLQNAPSLKLSRHSSSARDSDAGDDIRYTSLKDILVNFPSYG--SDLNDFNPDNISIRNDLVKRAASAYIRSSEILISRNQSSSAGYGG

Query:  VWRRLRIKLAALRSRFCDCDCFQHIFGFF
         W RLRIKLAALRSR+  CDCF   FGFF
Subjt:  VWRRLRIKLAALRSRFCDCDCFQHIFGFF

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
AT4G18395.1 unknown protein4.3e-0533.33Show/hide
Query:  LQNAPSLKLSRHSSSARDSDAGDDIRYTSLKDILVNFPSYGS---------------DLNDFNPDNISIRNDLVKRAASAYIRSSEILIS
        LQ +P + +S       D +  ++++YTSLKD++ +   +GS                L++ +  NI+I N+LVKRAAS Y++SS I+I+
Subjt:  LQNAPSLKLSRHSSSARDSDAGDDIRYTSLKDILVNFPSYGS---------------DLNDFNPDNISIRNDLVKRAASAYIRSSEILIS


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGGAGAATCAATCGCCACCAAAATCAACAACAAATACAACAACAGATCCTGATAATACTAACCTTCAAAACGCACCTTCATTGAAGCTCTCCCGGCACTCCTCCAGCGC
CAGAGACTCCGACGCCGGCGACGACATCCGGTACACCAGCCTGAAGGACATTCTCGTCAACTTCCCGTCGTACGGCAGCGATCTCAACGATTTCAATCCCGATAACATTT
CGATCCGAAACGACCTCGTGAAACGGGCGGCGTCGGCGTATATCCGATCGTCGGAGATTTTGATCAGCCGGAATCAGAGCAGCTCCGCCGGTTACGGCGGAGTCTGGCGC
CGGCTTCGGATCAAACTCGCGGCCCTCCGTTCCCGGTTCTGCGATTGCGATTGTTTTCAACACATTTTTGGTTTCTTTCCTTGTGCCCTAGATTAG
mRNA sequenceShow/hide mRNA sequence
ATCCTTCCCAAAATTCTCCCCATTTTAACCGCACCTTCAACCAAAACCATCCCCCAATTCAAGCTCCTATTTCCATGGCTACCGTCAACAAAAACCCTAACCCTAACTCA
AATTTTCCAATCCAAATCCAAATCAAAATCCCCAAACTCACTTCCAAACCTTCAATTCCACGAATCGCACAGAAATGGAGAATCAATCGCCACCAAAATCAACAACAAAT
ACAACAACAGATCCTGATAATACTAACCTTCAAAACGCACCTTCATTGAAGCTCTCCCGGCACTCCTCCAGCGCCAGAGACTCCGACGCCGGCGACGACATCCGGTACAC
CAGCCTGAAGGACATTCTCGTCAACTTCCCGTCGTACGGCAGCGATCTCAACGATTTCAATCCCGATAACATTTCGATCCGAAACGACCTCGTGAAACGGGCGGCGTCGG
CGTATATCCGATCGTCGGAGATTTTGATCAGCCGGAATCAGAGCAGCTCCGCCGGTTACGGCGGAGTCTGGCGCCGGCTTCGGATCAAACTCGCGGCCCTCCGTTCCCGG
TTCTGCGATTGCGATTGTTTTCAACACATTTTTGGTTTCTTTCCTTGTGCCCTAGATTAG
Protein sequenceShow/hide protein sequence
MENQSPPKSTTNTTTDPDNTNLQNAPSLKLSRHSSSARDSDAGDDIRYTSLKDILVNFPSYGSDLNDFNPDNISIRNDLVKRAASAYIRSSEILISRNQSSSAGYGGVWR
RLRIKLAALRSRFCDCDCFQHIFGFFPCALD