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Sed0011437 (gene) of Chayote v1 genome

Gene IDSed0011437
OrganismSechium edule (Chayote v1)
DescriptionUBC core domain-containing protein
Genome locationLG01:64917447..64921021
RNA-Seq ExpressionSed0011437
SyntenySed0011437
Gene Ontology termsGO:0000209 - protein polyubiquitination (biological process)
GO:0043161 - proteasome-mediated ubiquitin-dependent protein catabolic process (biological process)
GO:0005634 - nucleus (cellular component)
GO:0005524 - ATP binding (molecular function)
GO:0016491 - oxidoreductase activity (molecular function)
GO:0061631 - ubiquitin conjugating enzyme activity (molecular function)
GO:0071949 - FAD binding (molecular function)
InterPro domainsIPR000608 - Ubiquitin-conjugating enzyme E2
IPR016135 - Ubiquitin-conjugating enzyme/RWD-like


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAG6618229.1 hypothetical protein I3842_Q117900 [Carya illinoinensis]1.4e-1981.03Show/hide
Query:  MTSSSDSTRKKKLVEWQLHPPAGFKHKVTDNLQRWVIEVNGAPGTLYSNETYQIQAGF
        MTSS+  +RKK+LVEWQ++PPAGFKHKVTDNLQRWVIEVNGAPGTLY+NETYQ+Q  F
Subjt:  MTSSSDSTRKKKLVEWQLHPPAGFKHKVTDNLQRWVIEVNGAPGTLYSNETYQIQAGF

XP_022136917.1 probable ubiquitin-conjugating enzyme E2 16 [Momordica charantia]1.2e-1868.06Show/hide
Query:  MTSSSDSTRK-----------KKLVEWQLHPPAGFKHKVTDNLQRWVIEVNGAPGTLYSNETYQIQAGFRQY
        MTSSSD+ RK           K+LVEWQ++PPAGFKHKVTDNLQRWVIEVNGAPGTLY+NETYQ+Q  F ++
Subjt:  MTSSSDSTRK-----------KKLVEWQLHPPAGFKHKVTDNLQRWVIEVNGAPGTLYSNETYQIQAGFRQY

XP_022942312.1 probable ubiquitin-conjugating enzyme E2 16 [Cucurbita moschata]5.4e-1969.44Show/hide
Query:  MTSSSDSTRK-----------KKLVEWQLHPPAGFKHKVTDNLQRWVIEVNGAPGTLYSNETYQIQAGFRQY
        MTSSSDS RK           K+LVEWQ++PPAGFKHKVTDNLQRWVIEVNGAPGTLY+NETYQ+Q  F ++
Subjt:  MTSSSDSTRK-----------KKLVEWQLHPPAGFKHKVTDNLQRWVIEVNGAPGTLYSNETYQIQAGFRQY

XP_024948950.1 probable ubiquitin-conjugating enzyme E2 18 isoform X3 [Citrus sinensis]1.2e-1872.13Show/hide
Query:  MTSSSDSTRKKKLVEWQLHPPAGFKHKVTDNLQRWVIEVNGAPGTLYSNETYQIQAGFRQY
        M+ SS +TRKK+L EWQ++PP+GFKHK TDNLQRWVIEVNGAPGTLY+NETYQ+Q  F ++
Subjt:  MTSSSDSTRKKKLVEWQLHPPAGFKHKVTDNLQRWVIEVNGAPGTLYSNETYQIQAGFRQY

XP_038877729.1 probable ubiquitin-conjugating enzyme E2 16 [Benincasa hispida]5.4e-1969.44Show/hide
Query:  MTSSSDSTRK-----------KKLVEWQLHPPAGFKHKVTDNLQRWVIEVNGAPGTLYSNETYQIQAGFRQY
        MTSSSDS RK           K+L+EWQL+PPAGFKHKVTDNLQRWVIEVNGAPGTLY+NETYQ+Q  F ++
Subjt:  MTSSSDSTRK-----------KKLVEWQLHPPAGFKHKVTDNLQRWVIEVNGAPGTLYSNETYQIQAGFRQY

TrEMBL top hitse value%identityAlignment
A0A6J1C6S5 probable ubiquitin-conjugating enzyme E2 165.8e-1968.06Show/hide
Query:  MTSSSDSTRK-----------KKLVEWQLHPPAGFKHKVTDNLQRWVIEVNGAPGTLYSNETYQIQAGFRQY
        MTSSSD+ RK           K+LVEWQ++PPAGFKHKVTDNLQRWVIEVNGAPGTLY+NETYQ+Q  F ++
Subjt:  MTSSSDSTRK-----------KKLVEWQLHPPAGFKHKVTDNLQRWVIEVNGAPGTLYSNETYQIQAGFRQY

A0A6J1FPW6 probable ubiquitin-conjugating enzyme E2 162.6e-1969.44Show/hide
Query:  MTSSSDSTRK-----------KKLVEWQLHPPAGFKHKVTDNLQRWVIEVNGAPGTLYSNETYQIQAGFRQY
        MTSSSDS RK           K+LVEWQ++PPAGFKHKVTDNLQRWVIEVNGAPGTLY+NETYQ+Q  F ++
Subjt:  MTSSSDSTRK-----------KKLVEWQLHPPAGFKHKVTDNLQRWVIEVNGAPGTLYSNETYQIQAGFRQY

A0A6J1J6C9 probable ubiquitin-conjugating enzyme E2 162.6e-1969.44Show/hide
Query:  MTSSSDSTRK-----------KKLVEWQLHPPAGFKHKVTDNLQRWVIEVNGAPGTLYSNETYQIQAGFRQY
        MTSSSDS RK           K+LVEWQ++PPAGFKHKVTDNLQRWVIEVNGAPGTLY+NETYQ+Q  F ++
Subjt:  MTSSSDSTRK-----------KKLVEWQLHPPAGFKHKVTDNLQRWVIEVNGAPGTLYSNETYQIQAGFRQY

A0A6J1JD15 probable ubiquitin-conjugating enzyme E2 185.8e-1968.06Show/hide
Query:  MTSSSDSTRK-----------KKLVEWQLHPPAGFKHKVTDNLQRWVIEVNGAPGTLYSNETYQIQAGFRQY
        MTSSSDS RK           K+LVEWQ++PPAGFKH+VTDNLQRWVIEVNGAPGTLY+NETYQ+Q  F ++
Subjt:  MTSSSDSTRK-----------KKLVEWQLHPPAGFKHKVTDNLQRWVIEVNGAPGTLYSNETYQIQAGFRQY

V4SP32 UBC core domain-containing protein5.8e-1972.13Show/hide
Query:  MTSSSDSTRKKKLVEWQLHPPAGFKHKVTDNLQRWVIEVNGAPGTLYSNETYQIQAGFRQY
        M+ SS +TRKK+L EWQ++PP+GFKHK TDNLQRWVIEVNGAPGTLY+NETYQ+Q  F ++
Subjt:  MTSSSDSTRKKKLVEWQLHPPAGFKHKVTDNLQRWVIEVNGAPGTLYSNETYQIQAGFRQY

SwissProt top hitse value%identityAlignment
O23239 Probable ubiquitin-conjugating enzyme E2 175.6e-1951.69Show/hide
Query:  MTSSSDSTRK-----------KKLVEWQLHPPAGFKHKVTDNLQRWVIEVNGAPGTLYSNETYQIQAGFRQYQIKSEIIKIFEDHALPL
        MTSSS+STRK           K+ +EWQ +PP+GFKH+V+DNLQRW+IEV+G PGTLY+NETYQ+Q  F ++    E  ++   H  PL
Subjt:  MTSSSDSTRK-----------KKLVEWQLHPPAGFKHKVTDNLQRWVIEVNGAPGTLYSNETYQIQAGFRQYQIKSEIIKIFEDHALPL

P42743 Ubiquitin-conjugating enzyme 152.3e-1758.33Show/hide
Query:  MTSSSDSTRK-----------KKLVEWQLHPPAGFKHKVTDNLQRWVIEVNGAPGTLYSNETYQIQAGFRQY
        MTSSS  +RK           K+L EWQL+PP GF+HKVTDNLQ+W I+V GAPGTLY+NETYQ+Q  F ++
Subjt:  MTSSSDSTRK-----------KKLVEWQLHPPAGFKHKVTDNLQRWVIEVNGAPGTLYSNETYQIQAGFRQY

Q9FMM0 Probable ubiquitin-conjugating enzyme E2 188.1e-1859.72Show/hide
Query:  MTSSSDSTRK-----------KKLVEWQLHPPAGFKHKVTDNLQRWVIEVNGAPGTLYSNETYQIQAGFRQY
        MTSSS  +RK           K+L EWQ++PP GFKH+VTDNLQ+WVIEV GAPGTLY+NETY +Q  F Q+
Subjt:  MTSSSDSTRK-----------KKLVEWQLHPPAGFKHKVTDNLQRWVIEVNGAPGTLYSNETYQIQAGFRQY

Q9FWT2 Probable ubiquitin-conjugating enzyme E2 166.2e-1871.15Show/hide
Query:  KKKLVEWQLHPPAGFKHKVTDNLQRWVIEVNGAPGTLYSNETYQIQAGFRQY
        +K+LVEWQ++PP GFKHKVTDNLQRW+IEV GAPGTLY+N+TYQ+Q  F ++
Subjt:  KKKLVEWQLHPPAGFKHKVTDNLQRWVIEVNGAPGTLYSNETYQIQAGFRQY

Arabidopsis top hitse value%identityAlignment
AT1G45050.1 Ubiquitin-conjugating enzyme family protein1.7e-1858.33Show/hide
Query:  MTSSSDSTRK-----------KKLVEWQLHPPAGFKHKVTDNLQRWVIEVNGAPGTLYSNETYQIQAGFRQY
        MTSSS  +RK           K+L EWQL+PP GF+HKVTDNLQ+W I+V GAPGTLY+NETYQ+Q  F ++
Subjt:  MTSSSDSTRK-----------KKLVEWQLHPPAGFKHKVTDNLQRWVIEVNGAPGTLYSNETYQIQAGFRQY

AT1G75440.1 ubiquitin-conjugating enzyme 164.4e-1971.15Show/hide
Query:  KKKLVEWQLHPPAGFKHKVTDNLQRWVIEVNGAPGTLYSNETYQIQAGFRQY
        +K+LVEWQ++PP GFKHKVTDNLQRW+IEV GAPGTLY+N+TYQ+Q  F ++
Subjt:  KKKLVEWQLHPPAGFKHKVTDNLQRWVIEVNGAPGTLYSNETYQIQAGFRQY

AT4G36410.1 ubiquitin-conjugating enzyme 174.0e-2051.69Show/hide
Query:  MTSSSDSTRK-----------KKLVEWQLHPPAGFKHKVTDNLQRWVIEVNGAPGTLYSNETYQIQAGFRQYQIKSEIIKIFEDHALPL
        MTSSS+STRK           K+ +EWQ +PP+GFKH+V+DNLQRW+IEV+G PGTLY+NETYQ+Q  F ++    E  ++   H  PL
Subjt:  MTSSSDSTRK-----------KKLVEWQLHPPAGFKHKVTDNLQRWVIEVNGAPGTLYSNETYQIQAGFRQYQIKSEIIKIFEDHALPL

AT5G42990.1 ubiquitin-conjugating enzyme 185.7e-1959.72Show/hide
Query:  MTSSSDSTRK-----------KKLVEWQLHPPAGFKHKVTDNLQRWVIEVNGAPGTLYSNETYQIQAGFRQY
        MTSSS  +RK           K+L EWQ++PP GFKH+VTDNLQ+WVIEV GAPGTLY+NETY +Q  F Q+
Subjt:  MTSSSDSTRK-----------KKLVEWQLHPPAGFKHKVTDNLQRWVIEVNGAPGTLYSNETYQIQAGFRQY


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGACCAGCTCCTCTGACTCCACTCGCAAGAAGAAGCTCGTCGAGTGGCAGCTCCACCCTCCCGCTGGTTTCAAACACAAGGTCACCGATAATCTCCAGAGGTGGGTGAT
TGAAGTCAACGGAGCTCCTGGAACTCTTTATTCCAATGAAACCTACCAGATTCAGGCAGGCTTTCGACAATATCAAATCAAGTCAGAAATTATAAAAATATTTGAAGATC
ATGCTCTTCCTCTTACTATACTTAAATATTTGTTGACTCTGTTTGTATGGAATTGA
mRNA sequenceShow/hide mRNA sequence
GTTTCTCAAATTCGTAATTTCACCAAACTATCAGTTCGCTTCCTCCTCTTATTTTCTTTAAATCTTCGGCTGTTCTCCTTCTTCTGGTGTTGGAATCACGAAGTGTCACA
CGACGTTTGGGCTGTAAGAGTTGTATTGTTTTCGTCTTCTTTTTCTGTCCTCTGTCGTTGCGGAGCCAAACCCAAAGCATGACCAGCTCCTCTGACTCCACTCGCAAGAA
GAAGCTCGTCGAGTGGCAGCTCCACCCTCCCGCTGGTTTCAAACACAAGGTCACCGATAATCTCCAGAGGTGGGTGATTGAAGTCAACGGAGCTCCTGGAACTCTTTATT
CCAATGAAACCTACCAGATTCAGGCAGGCTTTCGACAATATCAAATCAAGTCAGAAATTATAAAAATATTTGAAGATCATGCTCTTCCTCTTACTATACTTAAATATTTG
TTGACTCTGTTTGTATGGAATTGATGCTTTTGGGATTCGTAGCGTTGTTATTGATGTGACTGTTGATGTGGAAAAGTTTGATTTGCTCCTAAATCTGAAGAGAGAGAGTA
AAGAAGAGAAGTTCAAAGTGGAGGCTCAGAAGAACAATCAAGGTACTTTGTTCAAAATGAGGATTGCTTGAATCTACCATTATCGTGCAAATTGTCAATCCACTTATACT
TCGCACAAGGGATATCAAACAATACTTCTTTGTTATATTGTAAACTATCTAGTTTTCAAACCCCTTATAGACATTTTGAGAATTATAAATTTATTGATATTGATATTTTT
TTTTTCCAAGTGTAATGTACAAATTATTTAGTAATATATGAAATAATATTTGTTGAAGAAGA
Protein sequenceShow/hide protein sequence
MTSSSDSTRKKKLVEWQLHPPAGFKHKVTDNLQRWVIEVNGAPGTLYSNETYQIQAGFRQYQIKSEIIKIFEDHALPLTILKYLLTLFVWN