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Sed0011460 (gene) of Chayote v1 genome

Gene IDSed0011460
OrganismSechium edule (Chayote v1)
Descriptionzinc finger protein 6-like
Genome locationLG11:36035777..36036094
RNA-Seq ExpressionSed0011460
SyntenySed0011460
Gene Ontology termsGO:0009736 - cytokinin-activated signaling pathway (biological process)
GO:0009740 - gibberellic acid mediated signaling pathway (biological process)
GO:0010090 - trichome morphogenesis (biological process)
GO:0005634 - nucleus (cellular component)
GO:0000976 - transcription regulatory region sequence-specific DNA binding (molecular function)
GO:0003700 - DNA-binding transcription factor activity (molecular function)
InterPro domainsIPR013087 - Zinc finger C2H2-type
IPR036236 - Zinc finger C2H2 superfamily
IPR044299 - Zinc finger protein GIS3/ZFP5/ZFP6


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAG6578343.1 Zinc finger protein 6, partial [Cucurbita argyrosperma subsp. sororia]2.3e-2143.12Show/hide
Query:  MANSEVKLFGFNISKEKRTVSKLREA----------VERPKLECQFCCREFTNSQALGGHQNAHREERRLSKR-------------------LPSSFAPP
        MANS++KLFGFNIS++ ++VS   E              PK ECQ+CCR F+NSQALGGHQNAHREERRL KR                   L SSF P 
Subjt:  MANSEVKLFGFNISKEKRTVSKLREA----------VERPKLECQFCCREFTNSQALGGHQNAHREERRLSKR-------------------LPSSFAPP

Query:  PPPPPT--------------------------VVGVLGDDAVSGRDLGVDLRLTLGPANP
        PP  P                            VG +GD+AV GR LG+DL+L+LGP+ P
Subjt:  PPPPPT--------------------------VVGVLGDDAVSGRDLGVDLRLTLGPANP

XP_022939247.1 zinc finger protein 6-like [Cucurbita moschata]1.3e-2144.38Show/hide
Query:  MANSEVKLFGFNISKEKRTVSKLREA----------VERPKLECQFCCREFTNSQALGGHQNAHREERRLSKR-------------------LPSSFAPP
        MANS++KLFGFNIS++ ++VS   E              PK ECQ+CCR F+NSQALGGHQNAHREERRL KR                   L SSFAP 
Subjt:  MANSEVKLFGFNISKEKRTVSKLREA----------VERPKLECQFCCREFTNSQALGGHQNAHREERRLSKR-------------------LPSSFAPP

Query:  PP--PPPT------------------------VVGVLGDDAVSGRDLGVDLRLTLGPANP
        PP  PP                           VG +GD+AV GR LG+DL+L+LGP+ P
Subjt:  PP--PPPT------------------------VVGVLGDDAVSGRDLGVDLRLTLGPANP

XP_022993371.1 zinc finger protein 6-like [Cucurbita maxima]6.6e-2143.12Show/hide
Query:  MANSEVKLFGFNISKEKRTVSKLREA----------VERPKLECQFCCREFTNSQALGGHQNAHREERRLSKR-------------------LPSSFAPP
        MANS++KLFGFNIS+   +VS   E              PK ECQ+CCR F+NSQALGGHQNAHREERRL KR                   L SSF P 
Subjt:  MANSEVKLFGFNISKEKRTVSKLREA----------VERPKLECQFCCREFTNSQALGGHQNAHREERRLSKR-------------------LPSSFAPP

Query:  PPPPPT--------------------------VVGVLGDDAVSGRDLGVDLRLTLGPANP
        PP  P                            VG +GD+AV GR LG+DL+L+LGP+ P
Subjt:  PPPPPT--------------------------VVGVLGDDAVSGRDLGVDLRLTLGPANP

XP_023550962.1 zinc finger protein 6-like [Cucurbita pepo subsp. pepo]2.3e-2143.12Show/hide
Query:  MANSEVKLFGFNISKEKRTVSKLREA----------VERPKLECQFCCREFTNSQALGGHQNAHREERRLSKR-------------------LPSSFAPP
        MANS++KLFGFNIS++ ++VS   E              PK ECQ+CCR F+NSQALGGHQNAHREERRL KR                   L SSF P 
Subjt:  MANSEVKLFGFNISKEKRTVSKLREA----------VERPKLECQFCCREFTNSQALGGHQNAHREERRLSKR-------------------LPSSFAPP

Query:  PPPPPT--------------------------VVGVLGDDAVSGRDLGVDLRLTLGPANP
        PP  P                            VG +GD+AV GR LG+DL+L+LGP+ P
Subjt:  PPPPPT--------------------------VVGVLGDDAVSGRDLGVDLRLTLGPANP

XP_038886238.1 zinc finger protein 6-like [Benincasa hispida]2.3e-2143.37Show/hide
Query:  MANSEVKLFGFNISKEKRTVSKL-----------REAVERPKLECQFCCREFTNSQALGGHQNAHREERRLSKR-------------------LPSSFAP
        M  S +KLFGFNISKEK+TVS +            E    PK ECQ+CCREF+NSQALGGHQNAHREER+L K                    L SSF P
Subjt:  MANSEVKLFGFNISKEKRTVSKL-----------REAVERPKLECQFCCREFTNSQALGGHQNAHREERRLSKR-------------------LPSSFAP

Query:  PPPP-----PPT--------------------------VVGVLGDDAVSGRDLGVDLRLTLGPANP
        PP P     PP+                          V+GV+GD+ VSG  LG+DL+L+LGP  P
Subjt:  PPPP-----PPT--------------------------VVGVLGDDAVSGRDLGVDLRLTLGPANP

TrEMBL top hitse value%identityAlignment
A0A0A0LQ31 C2H2-type domain-containing protein1.2e-1256.16Show/hide
Query:  MANSEVKLFGFNISKEKRTVSKLRE---AVER--------PKLECQFCCREFTNSQALGGHQNAHREERRLSK
        ++NS +KLFGF+ISKE + VS  +E    VE         PK EC++CCR+F+NSQALGGHQNAH+EER+L K
Subjt:  MANSEVKLFGFNISKEKRTVSKLRE---AVER--------PKLECQFCCREFTNSQALGGHQNAHREERRLSK

A0A6J1C9X8 zinc finger protein 5-like3.0e-1139.67Show/hide
Query:  VKLFGFNISK-----EKRTVSKLREAVERPKLECQFCCREFTNSQALGGHQNAHREERRLSKRLP-----------------SSFAPPPPPPPTVVGVLG
        +KLFGF+++        R  +  R   +  + ECQFC R+F NSQALGGHQNAH+ ER L+K+L                  SS  PP  PPP    + G
Subjt:  VKLFGFNISK-----EKRTVSKLREAVERPKLECQFCCREFTNSQALGGHQNAHREERRLSKRLP-----------------SSFAPPPPPPPTVVGVLG

Query:  DDAVSGRDLGVDLRLTLGPAN
        D+       GVDL LTL P++
Subjt:  DDAVSGRDLGVDLRLTLGPAN

A0A6J1FG99 zinc finger protein 6-like6.5e-2244.38Show/hide
Query:  MANSEVKLFGFNISKEKRTVSKLREA----------VERPKLECQFCCREFTNSQALGGHQNAHREERRLSKR-------------------LPSSFAPP
        MANS++KLFGFNIS++ ++VS   E              PK ECQ+CCR F+NSQALGGHQNAHREERRL KR                   L SSFAP 
Subjt:  MANSEVKLFGFNISKEKRTVSKLREA----------VERPKLECQFCCREFTNSQALGGHQNAHREERRLSKR-------------------LPSSFAPP

Query:  PP--PPPT------------------------VVGVLGDDAVSGRDLGVDLRLTLGPANP
        PP  PP                           VG +GD+AV GR LG+DL+L+LGP+ P
Subjt:  PP--PPPT------------------------VVGVLGDDAVSGRDLGVDLRLTLGPANP

A0A6J1JW51 zinc finger protein 6-like3.2e-2143.12Show/hide
Query:  MANSEVKLFGFNISKEKRTVSKLREA----------VERPKLECQFCCREFTNSQALGGHQNAHREERRLSKR-------------------LPSSFAPP
        MANS++KLFGFNIS+   +VS   E              PK ECQ+CCR F+NSQALGGHQNAHREERRL KR                   L SSF P 
Subjt:  MANSEVKLFGFNISKEKRTVSKLREA----------VERPKLECQFCCREFTNSQALGGHQNAHREERRLSKR-------------------LPSSFAPP

Query:  PPPPPT--------------------------VVGVLGDDAVSGRDLGVDLRLTLGPANP
        PP  P                            VG +GD+AV GR LG+DL+L+LGP+ P
Subjt:  PPPPPT--------------------------VVGVLGDDAVSGRDLGVDLRLTLGPANP

A0A6J1KZQ7 zinc finger protein 6-like7.9e-1241.03Show/hide
Query:  VKLFGFNI--SKEKRTVSKLREAVERPKLECQFCCREFTNSQALGGHQNAHREERRLSKR-LPSSFAPPPPPPPTVVGV---------------LGDDAV
        +KLFG+++  S E    +     ++R   ECQFC REF NSQALGGHQNAH+ ER+L+K+ LP +F   P PPP+  G+               +G   +
Subjt:  VKLFGFNI--SKEKRTVSKLREAVERPKLECQFCCREFTNSQALGGHQNAHREERRLSKR-LPSSFAPPPPPPPTVVGV---------------LGDDAV

Query:  SGRDLGVDLRLTLGPAN
        +G + GVDL L+L P++
Subjt:  SGRDLGVDLRLTLGPAN

SwissProt top hitse value%identityAlignment
Q39264 Zinc finger protein 56.7e-0841.89Show/hide
Query:  ANSEVKLFGFNI-----SKEKRTVSKLREAVERPKL------ECQFCCREFTNSQALGGHQNAHREERRLSKRL
        ++  +KLFGF +     + E  T   +  +     L      ECQ+C +EF NSQALGGHQNAH++ER   KRL
Subjt:  ANSEVKLFGFNI-----SKEKRTVSKLREAVERPKL------ECQFCCREFTNSQALGGHQNAHREERRLSKRL

Q39265 Zinc finger protein 66.5e-1150.75Show/hide
Query:  SEVKLFGFNISKEKRTVSKLRE-------AVERPKLECQFCCREFTNSQALGGHQNAHREERRLSKR
        S +KLFG N+ +     ++  E         E  K ECQ+CCREF NSQALGGHQNAH++ER+L KR
Subjt:  SEVKLFGFNISKEKRTVSKLRE-------AVERPKLECQFCCREFTNSQALGGHQNAHREERRLSKR

Q84WI0 Zinc finger protein GIS4.8e-0654.35Show/hide
Query:  KLECQFCCREFTNSQALGGHQNAHREERRLSKRLPSSFAPPPPPPP
        + EC +C R F  SQALGGHQNAH+ ER+L+KR  SS+   P   P
Subjt:  KLECQFCCREFTNSQALGGHQNAHREERRLSKRLPSSFAPPPPPPP

Q9C9H1 Zinc finger protein GIS31.8e-0875.76Show/hide
Query:  KLECQFCCREFTNSQALGGHQNAHREERRLSKR
        K ECQ+CCREF NSQALGGHQNAH++ER+  KR
Subjt:  KLECQFCCREFTNSQALGGHQNAHREERRLSKR

Q9FG05 Zinc finger protein GIS24.8e-0638.24Show/hide
Query:  VKLFGFNI------SKEKRTVSKLREAV----ERPKLECQFCCREFTNSQALGGHQNAHREERRLSKR
        ++LFGF        S+ K   ++  E++    +  + +C +C R F  SQALGGHQNAH+ ER+ +KR
Subjt:  VKLFGFNI------SKEKRTVSKLREAV----ERPKLECQFCCREFTNSQALGGHQNAHREERRLSKR

Arabidopsis top hitse value%identityAlignment
AT1G10480.1 zinc finger protein 54.8e-0941.89Show/hide
Query:  ANSEVKLFGFNI-----SKEKRTVSKLREAVERPKL------ECQFCCREFTNSQALGGHQNAHREERRLSKRL
        ++  +KLFGF +     + E  T   +  +     L      ECQ+C +EF NSQALGGHQNAH++ER   KRL
Subjt:  ANSEVKLFGFNI-----SKEKRTVSKLREAVERPKL------ECQFCCREFTNSQALGGHQNAHREERRLSKRL

AT1G67030.1 zinc finger protein 64.6e-1250.75Show/hide
Query:  SEVKLFGFNISKEKRTVSKLRE-------AVERPKLECQFCCREFTNSQALGGHQNAHREERRLSKR
        S +KLFG N+ +     ++  E         E  K ECQ+CCREF NSQALGGHQNAH++ER+L KR
Subjt:  SEVKLFGFNISKEKRTVSKLRE-------AVERPKLECQFCCREFTNSQALGGHQNAHREERRLSKR

AT1G68360.1 C2H2 and C2HC zinc fingers superfamily protein1.3e-0975.76Show/hide
Query:  KLECQFCCREFTNSQALGGHQNAHREERRLSKR
        K ECQ+CCREF NSQALGGHQNAH++ER+  KR
Subjt:  KLECQFCCREFTNSQALGGHQNAHREERRLSKR

AT3G58070.1 C2H2 and C2HC zinc fingers superfamily protein3.4e-0754.35Show/hide
Query:  KLECQFCCREFTNSQALGGHQNAHREERRLSKRLPSSFAPPPPPPP
        + EC +C R F  SQALGGHQNAH+ ER+L+KR  SS+   P   P
Subjt:  KLECQFCCREFTNSQALGGHQNAHREERRLSKRLPSSFAPPPPPPP

AT5G01860.1 C2H2 and C2HC zinc fingers superfamily protein3.4e-0753.49Show/hide
Query:  SKLREAVERPKLECQFCCREFTNSQALGGHQNAHREERRLSKR
        S  R   +     C FC +EF+ SQALGGHQNAH++ER L+KR
Subjt:  SKLREAVERPKLECQFCCREFTNSQALGGHQNAHREERRLSKR


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGGCTAACTCTGAGGTAAAGCTGTTTGGTTTCAACATCTCAAAGGAGAAGAGAACAGTTTCAAAATTGAGAGAGGCGGTGGAGAGGCCGAAGTTGGAGTGCCAATTTTG
TTGCAGAGAATTTACAAACTCGCAAGCTCTGGGGGGCCACCAAAACGCCCACAGAGAAGAAAGACGGCTTTCGAAGAGGCTGCCCTCGTCCTTTGCGCCGCCGCCGCCGC
CACCGCCCACGGTGGTCGGGGTTTTAGGAGATGATGCAGTTTCCGGTCGGGATTTGGGGGTGGATTTACGATTAACTCTTGGGCCGGCTAACCCTTGA
mRNA sequenceShow/hide mRNA sequence
ATGGCTAACTCTGAGGTAAAGCTGTTTGGTTTCAACATCTCAAAGGAGAAGAGAACAGTTTCAAAATTGAGAGAGGCGGTGGAGAGGCCGAAGTTGGAGTGCCAATTTTG
TTGCAGAGAATTTACAAACTCGCAAGCTCTGGGGGGCCACCAAAACGCCCACAGAGAAGAAAGACGGCTTTCGAAGAGGCTGCCCTCGTCCTTTGCGCCGCCGCCGCCGC
CACCGCCCACGGTGGTCGGGGTTTTAGGAGATGATGCAGTTTCCGGTCGGGATTTGGGGGTGGATTTACGATTAACTCTTGGGCCGGCTAACCCTTGA
Protein sequenceShow/hide protein sequence
MANSEVKLFGFNISKEKRTVSKLREAVERPKLECQFCCREFTNSQALGGHQNAHREERRLSKRLPSSFAPPPPPPPTVVGVLGDDAVSGRDLGVDLRLTLGPANP