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Sed0011461 (gene) of Chayote v1 genome

Gene IDSed0011461
OrganismSechium edule (Chayote v1)
DescriptionRetrovirus-related Pol polyprotein from transposon TNT 1-94
Genome locationLG09:14157996..14160689
RNA-Seq ExpressionSed0011461
SyntenySed0011461
Gene Ontology termsNA
InterPro domainsNA


Homology Show/hide homology
GenBank top hitse value%identityAlignment
AAD32759.1 putative retroelement pol polyprotein [Arabidopsis thaliana]1.1e-0636.89Show/hide
Query:  LQLAEAIKELIWLKGLVTEMLGEESSIE----KCSVI-----------VKYFE-KYCSHYIRDVVQDGTISLWKVGTEHNPADLFTKATMNERFSYLCGL
        + L EA+KE IWLKGL+ +   E+ S+E      S I            K+ + KY  H+IR+++ DGT+ + K+ TE NPAD+FTK     +F     L
Subjt:  LQLAEAIKELIWLKGLVTEMLGEESSIE----KCSVI-----------VKYFE-KYCSHYIRDVVQDGTISLWKVGTEHNPADLFTKATMNERFSYLCGL

Query:  LKM
        L++
Subjt:  LKM
CAA7046581.1 unnamed protein product [Microthlaspi erraticum]3.1e-0636.89Show/hide
Query:  LQLAEAIKELIWLKGLVTEMLGEESSIE----KCSVI-----------VKYFE-KYCSHYIRDVVQDGTISLWKVGTEHNPADLFTKATMNERFSYLCGL
        + L EA+KE +WLKGL+ E   ++ S+E      S I            K+ + KY  H+IRDV+ DG + + K+ TE NPAD+FTK     +F     L
Subjt:  LQLAEAIKELIWLKGLVTEMLGEESSIE----KCSVI-----------VKYFE-KYCSHYIRDVVQDGTISLWKVGTEHNPADLFTKATMNERFSYLCGL

Query:  LKM
        L++
Subjt:  LKM
CAA7052282.1 unnamed protein product [Microthlaspi erraticum]4.1e-0637.25Show/hide
Query:  LQLAEAIKELIWLKGLVTEMLGEESSIE----KCSVI-----------VKYFE-KYCSHYIRDVVQDGTISLWKVGTEHNPADLFTKATMNERFSYLCGL
        + L EA+KE +WLKGL+ E   ++ S+E      S I            K+ + KY  H+IRDV+ DG + + K+ TE NPAD+FTK     +F     L
Subjt:  LQLAEAIKELIWLKGLVTEMLGEESSIE----KCSVI-----------VKYFE-KYCSHYIRDVVQDGTISLWKVGTEHNPADLFTKATMNERFSYLCGL

Query:  LK
        L+
Subjt:  LK
CAA7062683.1 unnamed protein product [Microthlaspi erraticum]3.1e-0636.89Show/hide
Query:  LQLAEAIKELIWLKGLVTEMLGEESSIE----KCSVI-----------VKYFE-KYCSHYIRDVVQDGTISLWKVGTEHNPADLFTKATMNERFSYLCGL
        + L EA+KE +WLKGL+ E   ++ S+E      S I            K+ + KY  H+IRDV+ DG + + K+ TE NPAD+FTK     +F     L
Subjt:  LQLAEAIKELIWLKGLVTEMLGEESSIE----KCSVI-----------VKYFE-KYCSHYIRDVVQDGTISLWKVGTEHNPADLFTKATMNERFSYLCGL

Query:  LKM
        L++
Subjt:  LKM
OAE29077.1 hypothetical protein AXG93_1626s1040 [Marchantia polymorpha subsp. ruderalis]6.9e-0632.04Show/hide
Query:  LQLAEAIKELIWLKGLVTEMLGEESSI----EKCSVIVKYFEKY------------CSHYIRDVVQDGTISLWKVGTEHNPADLFTKATMNERFSYLCGL
        + + EA+KE IWLKGLVTE+   +  +    +  S I  +  K+              H++RD++  G +S+ K+ TE NP+D+ TK+    +F++  GL
Subjt:  LQLAEAIKELIWLKGLVTEMLGEESSI----EKCSVIVKYFEKY------------CSHYIRDVVQDGTISLWKVGTEHNPADLFTKATMNERFSYLCGL

Query:  LKM
        + M
Subjt:  LKM
TrEMBL top hitse value%identityAlignment
A0A176W7N9 Reverse transcriptase Ty1/copia-type domain-containing protein3.4e-0632.04Show/hide
Query:  LQLAEAIKELIWLKGLVTEMLGEESSI----EKCSVIVKYFEKY------------CSHYIRDVVQDGTISLWKVGTEHNPADLFTKATMNERFSYLCGL
        + + EA+KE IWLKGLVTE+   +  +    +  S I  +  K+              H++RD++  G +S+ K+ TE NP+D+ TK+    +F++  GL
Subjt:  LQLAEAIKELIWLKGLVTEMLGEESSI----EKCSVIVKYFEKY------------CSHYIRDVVQDGTISLWKVGTEHNPADLFTKATMNERFSYLCGL

Query:  LKM
        + M
Subjt:  LKM
A0A6D2KFT3 Uncharacterized protein1.5e-0636.89Show/hide
Query:  LQLAEAIKELIWLKGLVTEMLGEESSIE----KCSVI-----------VKYFE-KYCSHYIRDVVQDGTISLWKVGTEHNPADLFTKATMNERFSYLCGL
        + L EA+KE +WLKGL+ E   ++ S+E      S I            K+ + KY  H+IRDV+ DG + + K+ TE NPAD+FTK     +F     L
Subjt:  LQLAEAIKELIWLKGLVTEMLGEESSIE----KCSVI-----------VKYFE-KYCSHYIRDVVQDGTISLWKVGTEHNPADLFTKATMNERFSYLCGL

Query:  LKM
        L++
Subjt:  LKM
A0A6D2KWL8 Uncharacterized protein2.0e-0637.25Show/hide
Query:  LQLAEAIKELIWLKGLVTEMLGEESSIE----KCSVI-----------VKYFE-KYCSHYIRDVVQDGTISLWKVGTEHNPADLFTKATMNERFSYLCGL
        + L EA+KE +WLKGL+ E   ++ S+E      S I            K+ + KY  H+IRDV+ DG + + K+ TE NPAD+FTK     +F     L
Subjt:  LQLAEAIKELIWLKGLVTEMLGEESSIE----KCSVI-----------VKYFE-KYCSHYIRDVVQDGTISLWKVGTEHNPADLFTKATMNERFSYLCGL

Query:  LK
        L+
Subjt:  LK
A0A6D2L7N3 Uncharacterized protein1.5e-0636.89Show/hide
Query:  LQLAEAIKELIWLKGLVTEMLGEESSIE----KCSVI-----------VKYFE-KYCSHYIRDVVQDGTISLWKVGTEHNPADLFTKATMNERFSYLCGL
        + L EA+KE +WLKGL+ E   ++ S+E      S I            K+ + KY  H+IRDV+ DG + + K+ TE NPAD+FTK     +F     L
Subjt:  LQLAEAIKELIWLKGLVTEMLGEESSIE----KCSVI-----------VKYFE-KYCSHYIRDVVQDGTISLWKVGTEHNPADLFTKATMNERFSYLCGL

Query:  LKM
        L++
Subjt:  LKM
Q9SH77 Putative retroelement pol polyprotein5.2e-0736.89Show/hide
Query:  LQLAEAIKELIWLKGLVTEMLGEESSIE----KCSVI-----------VKYFE-KYCSHYIRDVVQDGTISLWKVGTEHNPADLFTKATMNERFSYLCGL
        + L EA+KE IWLKGL+ +   E+ S+E      S I            K+ + KY  H+IR+++ DGT+ + K+ TE NPAD+FTK     +F     L
Subjt:  LQLAEAIKELIWLKGLVTEMLGEESSIE----KCSVI-----------VKYFE-KYCSHYIRDVVQDGTISLWKVGTEHNPADLFTKATMNERFSYLCGL

Query:  LKM
        L++
Subjt:  LKM
SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGTTACTACAGCTAGCGGAAGCCATTAAGGAGTTAATTTGGCTGAAGGGACTTGTAACAGAGATGCTAGGAGAAGAAAGTAGCATAGAGAAATGCAGTGTGATAGTGAA
ATATTTCGAAAAATATTGTTCACATTACATACGAGATGTTGTACAAGATGGAACCATATCACTGTGGAAAGTTGGCACAGAACACAATCCGGCGGACTTGTTTACTAAGG
CGACGATGAACGAGAGATTTTCATATCTCTGTGGCCTTTTGAAGATGGGAGCTGGATACACTACTGTGGAGAAGATAAAGAGTTCTCAGGTCAACGGAGGATTTTGTTGT
TTGACTTGCTTCTCCACCTCATCATTGGGCAAATAG
mRNA sequenceShow/hide mRNA sequence
TTTCAAGCTGTAATCAATGGTCCAAAGCTCACCCCCTCATTTCTTTTTCTATTCTTCTTTTTTTCTCTTGCAAATTGTTAACGTTAGGTTTTCGATTGTAGCTTTCGATT
TGAGGTGATCCATCATCTTCACAGTTGGTATCATAGCTTCGAAGATAGCGTTCATGATGGAAAAAAGTGACTTTGGGTTATGGAAAAGGAAGATAAAGGCTCTTCTGGTT
CATCAGAAGGTCGCGAAGATTCTGAGTGTCAAAGATGATAAATCTGTGGCTATGAAAGAGCAAGCAAAGCACCATTATTCTTTACCTTGGAGACAACGTCTTAAGAAGAA
TCGGTGAAGTGCAAGGTGTTGCAGAGCTTGGGAAGAAGCTCCATGAGATAGATGTATGTTGCGAAATCTCTTACTCATGGAAAGGTGAGAAGATTGATCCGGAGAATCAG
GCAGTAATTTTGTTAAATTCTTTACCAGAAAAATATACAAAGAAGTGAAATCTGCGATGAAGTATGGAACAGACTTGATTACCAGCGGCGTAAGATCAAAGGAACTCGAA
ATGAAGGTTGAAAATATTGAATCAGAAGCTTTGTTCATCAAGAACAAGAATTCAAAATATAACAATTTCAAGAACACAAAGCAAGGCTCGAAATCTGGTAAGACAAGTCA
ATCTAATTCTACACATTCTACTGGCAATGTCAAGGGACTCCATGCTTTGCAGAAGCAAGGATGAATAGAGAAAAAAAAATGTAATAAAGTCTATTTCTGCAAACATTACA
TAATCGAGAAGTCAACGAGGAAAAGTTTCTCTAGATCTTCTTCGAAAACTTCTGAGGTATTGCAGCTTGTTCATTCAGATTTATGGGGTTCTGCAAAAGTTGCAACTCAT
GGAGGAGCTCGTTATTATCTCTCAATAGTTGATGACTACTCTAGAAAACTTTGGGTTTATATGCTGAAATCAAAGGACGAAAATTTTGAAAAGTTCCAAATTTGGGAAAG
ACTTGTAGAGAACCAAACAGGTAAAAGAGTCAAAATTTTGCGAACTGATAATGGACCTTAATATTTGAATTTGAGGTTTGGAAGTCTCTGCAATGAAAGTGGCATAGTAA
GGCATTTTATGGTTCTAGGAACGCCTCAACAGAATGGCCTTGTAGAACGATACAATCGCACAATTCTTGAAAAAGTTCGATGTATGTTATCAAATGCTTAGATGCCTAAG
TCTTTTTGGGGAGAGGCAGTTCTAACTGTAGCCTATATAATTAATCGATGTCCATCAACTGCTCTAGATTCTAAAACTCCTTAAGAGATTTGGAATGGATCTGCACCAAA
GCTGAATCACTTGAGAGTGTTTGGATGTGCAACATATGCACATTTGAAGCAAGGAAAATTAGAGGCAAGTGCAAAGAAGTGTGTGTTTATCGGCTATCCAGTTTGGGATA
AAATGTTACAAAATTTGGTCTATCGAACCTAGTAAAAACAAGTGTTTTATCAGTAGAGATGTCATTTTCAATGAGGAAGTGATGCCATGGAAGGATTCGCAGAATATAAG
TCACTCGCTGATGTAGAGTGCTTTTGAAATTGAATTGGATGAAGTAGTGACCTCAAAGAATAAAGGAAATGATGGTCAAGAAATAGAACCTGTTGATACTTCACCTAAAC
TTGAGCCAATTCAAATCCCCAGTGATACAAGTGATGGTTTAGGTTCATACCAACTTGCCAGTGATAGAGAAAGAAGGACAATTAGACCTCTTAACAGGTATGGTGAAGCT
AAAATTGCAACTTATGCATTGAACTGTTTTGAAGAAATTTCTTTTAGTGAACCTGCCTCCTATAAAGAAGCACTTCTATCTCCTAAGGCAGAAGATTGGAAGAAGGTAAT
GCATATTGAATATGAATCCCTCATGAAGAATCAAACATGGATACTTGTCCCAACTCCTAAAAATAAGAAAGTAGTTTCTTGTAAATGGATTTACAAACTGAAACTGGGAG
TAAAAGCATCAGATAAGCTTAGATTGAAGGCTAGACTTGTAGAAAAAGGGTATATACAAGAGGAAGGCACTGATTTTAATGAGGTATTTTCACCAGTTGTAAAACACACC
TCAATTCCTGCACTGTTGTCCTTAATTACAACAGATGGATGTTACTACAGCTAGCGGAAGCCATTAAGGAGTTAATTTGGCTGAAGGGACTTGTAACAGAGATGCTAGGA
GAAGAAAGTAGCATAGAGAAATGCAGTGTGATAGTGAAATATTTCGAAAAATATTGTTCACATTACATACGAGATGTTGTACAAGATGGAACCATATCACTGTGGAAAGT
TGGCACAGAACACAATCCGGCGGACTTGTTTACTAAGGCGACGATGAACGAGAGATTTTCATATCTCTGTGGCCTTTTGAAGATGGGAGCTGGATACACTACTGTGGAGA
AGATAAAGAGTTCTCAGGTCAACGGAGGATTTTGTTGTTTGACTTGCTTCTCCACCTCATCATTGGGCAAATAGGTGGTGTGGGTTTATTGTGCATTCTCATTCGTTGGA
TTATAAGTCGTAATCAGTGGTCCAAAGCTCACCACCTCATTTTATTGATTTCATTTTGTATATGCCTATTAGATGTATAAAAGAG
Protein sequenceShow/hide protein sequence
MLLQLAEAIKELIWLKGLVTEMLGEESSIEKCSVIVKYFEKYCSHYIRDVVQDGTISLWKVGTEHNPADLFTKATMNERFSYLCGLLKMGAGYTTVEKIKSSQVNGGFCC
LTCFSTSSLGK