; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; CuGenDBv2

Sed0011483 (gene) of Chayote v1 genome

Gene IDSed0011483
OrganismSechium edule (Chayote v1)
DescriptionF-box protein SNE-like
Genome locationLG04:46046928..46047615
RNA-Seq ExpressionSed0011483
SyntenySed0011483
Gene Ontology termsGO:0009937 - regulation of gibberellic acid mediated signaling pathway (biological process)
GO:0019005 - SCF ubiquitin ligase complex (cellular component)
GO:0005515 - protein binding (molecular function)
InterPro domainsIPR001810 - F-box domain
IPR036047 - F-box-like domain superfamily
IPR044184 - F-box protein SNE


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAG6572228.1 F-box protein SNE, partial [Cucurbita argyrosperma subsp. sororia]1.2e-5478.08Show/hide
Query:  QNENRKIKISINDHLDILTEILKRLDGPSLCAAACVCRLWCALARNDDSLWEHLCFRHVTSPPPSAVRSVVLALGGYKRLYMLCLRPVLRRLMNRS----
        +N ++KIK SINDHLDILTEILKRLDGPSLCAAACVCRLWCALARNDDSLWEHLCFRHV+SP  S+VR ++LALGGYKRLYMLCLRPVL RL NRS    
Subjt:  QNENRKIKISINDHLDILTEILKRLDGPSLCAAACVCRLWCALARNDDSLWEHLCFRHVTSPPPSAVRSVVLALGGYKRLYMLCLRPVLRRLMNRS----

Query:  ------DLVLQLSLSLFCVDYYERNGFLSGDSAAAEAPSLRFLCNP
              D V +LSLSLFCVDYYERNG+L GD+AAA APSLRFLC P
Subjt:  ------DLVLQLSLSLFCVDYYERNGFLSGDSAAAEAPSLRFLCNP

KAG7011864.1 F-box protein SNE, partial [Cucurbita argyrosperma subsp. argyrosperma]2.2e-5678.52Show/hide
Query:  QNENRKIKISINDHLDILTEILKRLDGPSLCAAACVCRLWCALARNDDSLWEHLCFRHVTSPPPSAVRSVVLALGGYKRLYMLCLRPVLRRLMNRS----
        +N ++KIK SINDHLDILTEILKRLDGPSLCAAACVCRLWCALARNDDSLWEHLCFRHV+SP  S+VR ++LALGGYKRLYMLCLRPVL RL NRS    
Subjt:  QNENRKIKISINDHLDILTEILKRLDGPSLCAAACVCRLWCALARNDDSLWEHLCFRHVTSPPPSAVRSVVLALGGYKRLYMLCLRPVLRRLMNRS----

Query:  ------DLVLQLSLSLFCVDYYERNGFLSGDSAAAEAPSLRFLCNPVNV
              D V +LSLSLFCVDYYERNG+L GD+AAA APSLRFLC PVNV
Subjt:  ------DLVLQLSLSLFCVDYYERNGFLSGDSAAAEAPSLRFLCNPVNV

XP_022136160.1 F-box protein SNE-like [Momordica charantia]3.7e-5172.97Show/hide
Query:  ENRKIKISINDHLDILTEILKRLDGPSLCAAACVCRLWCALARNDDSLWEHLCFRHVTSPPPSAVRSVVLALGGYKRLYMLCLRPVL-----------RR
        + +  K SINDHLD+LTEIL+RLDGPSLCAAACVCRLWCALARNDDSLWEHLC RH +SPPPSA+RSVVLALGGYKRLYMLCLRP+L           RR
Subjt:  ENRKIKISINDHLDILTEILKRLDGPSLCAAACVCRLWCALARNDDSLWEHLCFRHVTSPPPSAVRSVVLALGGYKRLYMLCLRPVL-----------RR

Query:  LMNRSDLVLQLSLSLFCVDYYERNGFLSGDSAAAEAPSLRFLCNPVNV
        +    D  LQLSLSLF VD YER+G ++GD+AAA APSLRFLC PVNV
Subjt:  LMNRSDLVLQLSLSLFCVDYYERNGFLSGDSAAAEAPSLRFLCNPVNV

XP_022952371.1 F-box protein SNE-like [Cucurbita moschata]2.0e-5779.19Show/hide
Query:  QNENRKIKISINDHLDILTEILKRLDGPSLCAAACVCRLWCALARNDDSLWEHLCFRHVTSPPPSAVRSVVLALGGYKRLYMLCLRPVLRRLMNRS----
        +N ++KIK SINDHLDILTEILKRLDGPSLCAAACVCRLWCALARNDDSLWEHLCFRHV+SPP S+VR ++LALGGYKRLYMLCLRPVL RL NRS    
Subjt:  QNENRKIKISINDHLDILTEILKRLDGPSLCAAACVCRLWCALARNDDSLWEHLCFRHVTSPPPSAVRSVVLALGGYKRLYMLCLRPVLRRLMNRS----

Query:  ------DLVLQLSLSLFCVDYYERNGFLSGDSAAAEAPSLRFLCNPVNV
              D V +LSLSLFCVDYYERNG+L GD+AAA APSLRFLC PVNV
Subjt:  ------DLVLQLSLSLFCVDYYERNGFLSGDSAAAEAPSLRFLCNPVNV

XP_022969281.1 F-box protein SNE-like [Cucurbita maxima]1.3e-5678.52Show/hide
Query:  QNENRKIKISINDHLDILTEILKRLDGPSLCAAACVCRLWCALARNDDSLWEHLCFRHVTSPPPSAVRSVVLALGGYKRLYMLCLRPVLRRLMNRS----
        +N ++KIK SINDHLDILTEILKRLDGPSLCAAACVCRLWCALARNDDSLWEHLCF HV+SPP S+VR ++LALGGYKRLYMLCLRPVL RL NRS    
Subjt:  QNENRKIKISINDHLDILTEILKRLDGPSLCAAACVCRLWCALARNDDSLWEHLCFRHVTSPPPSAVRSVVLALGGYKRLYMLCLRPVLRRLMNRS----

Query:  ------DLVLQLSLSLFCVDYYERNGFLSGDSAAAEAPSLRFLCNPVNV
              D V +LSLSLFCVDYYERNG+L GD+AAA APSLRFLC PVNV
Subjt:  ------DLVLQLSLSLFCVDYYERNGFLSGDSAAAEAPSLRFLCNPVNV

TrEMBL top hitse value%identityAlignment
A0A5N6RCK8 F-box domain-containing protein2.5e-4570.27Show/hide
Query:  QNENRKIKISINDHLDILTEILKRLDGPSLCAAACVCRLWCALARNDDSLWEHLCFRHVTSPPPSAVRSVVLALGGYKRLYMLCLRPVLRRLMNRSDLV-
        + + +K K  INDH DILTEILKRLDGPSL  AACVCRLWCA+ARN DSLWEHLCFRHV SPPPS+VR VVLALGGYKRLYM+C+RPVL RL   SDLV 
Subjt:  QNENRKIKISINDHLDILTEILKRLDGPSLCAAACVCRLWCALARNDDSLWEHLCFRHVTSPPPSAVRSVVLALGGYKRLYMLCLRPVLRRLMNRSDLV-

Query:  --------LQLSLSLFCVDYYERNGFLSGDSAAAEAPSLRFLCNPVNV
                +QLSLSLFCVDYYER   L G    A A SL FLC PVNV
Subjt:  --------LQLSLSLFCVDYYERNGFLSGDSAAAEAPSLRFLCNPVNV

A0A6J1C339 F-box protein SNE-like1.8e-5172.97Show/hide
Query:  ENRKIKISINDHLDILTEILKRLDGPSLCAAACVCRLWCALARNDDSLWEHLCFRHVTSPPPSAVRSVVLALGGYKRLYMLCLRPVL-----------RR
        + +  K SINDHLD+LTEIL+RLDGPSLCAAACVCRLWCALARNDDSLWEHLC RH +SPPPSA+RSVVLALGGYKRLYMLCLRP+L           RR
Subjt:  ENRKIKISINDHLDILTEILKRLDGPSLCAAACVCRLWCALARNDDSLWEHLCFRHVTSPPPSAVRSVVLALGGYKRLYMLCLRPVL-----------RR

Query:  LMNRSDLVLQLSLSLFCVDYYERNGFLSGDSAAAEAPSLRFLCNPVNV
        +    D  LQLSLSLF VD YER+G ++GD+AAA APSLRFLC PVNV
Subjt:  LMNRSDLVLQLSLSLFCVDYYERNGFLSGDSAAAEAPSLRFLCNPVNV

A0A6J1GK18 F-box protein SNE-like9.8e-5879.19Show/hide
Query:  QNENRKIKISINDHLDILTEILKRLDGPSLCAAACVCRLWCALARNDDSLWEHLCFRHVTSPPPSAVRSVVLALGGYKRLYMLCLRPVLRRLMNRS----
        +N ++KIK SINDHLDILTEILKRLDGPSLCAAACVCRLWCALARNDDSLWEHLCFRHV+SPP S+VR ++LALGGYKRLYMLCLRPVL RL NRS    
Subjt:  QNENRKIKISINDHLDILTEILKRLDGPSLCAAACVCRLWCALARNDDSLWEHLCFRHVTSPPPSAVRSVVLALGGYKRLYMLCLRPVLRRLMNRS----

Query:  ------DLVLQLSLSLFCVDYYERNGFLSGDSAAAEAPSLRFLCNPVNV
              D V +LSLSLFCVDYYERNG+L GD+AAA APSLRFLC PVNV
Subjt:  ------DLVLQLSLSLFCVDYYERNGFLSGDSAAAEAPSLRFLCNPVNV

A0A6J1HXD0 F-box protein SNE-like6.4e-5778.52Show/hide
Query:  QNENRKIKISINDHLDILTEILKRLDGPSLCAAACVCRLWCALARNDDSLWEHLCFRHVTSPPPSAVRSVVLALGGYKRLYMLCLRPVLRRLMNRS----
        +N ++KIK SINDHLDILTEILKRLDGPSLCAAACVCRLWCALARNDDSLWEHLCF HV+SPP S+VR ++LALGGYKRLYMLCLRPVL RL NRS    
Subjt:  QNENRKIKISINDHLDILTEILKRLDGPSLCAAACVCRLWCALARNDDSLWEHLCFRHVTSPPPSAVRSVVLALGGYKRLYMLCLRPVLRRLMNRS----

Query:  ------DLVLQLSLSLFCVDYYERNGFLSGDSAAAEAPSLRFLCNPVNV
              D V +LSLSLFCVDYYERNG+L GD+AAA APSLRFLC PVNV
Subjt:  ------DLVLQLSLSLFCVDYYERNGFLSGDSAAAEAPSLRFLCNPVNV

A0A7N2MAR0 F-box domain-containing protein5.6e-4568.49Show/hide
Query:  EQNENRKIKISINDHLDILTEILKRLDGPSLCAAACVCRLWCALARNDDSLWEHLCFRHVTSPPPSAVRSVVLALGGYKRLYMLCLRPVLRRLMNR-SDL
        E+ + +K K  +NDH+DIL E+LKRLDGPSL  AACVCRLWC L R+ DSLWEHLCFRHV+SPPPS+VR VV+ALGGYKRLYM+C+RPVL RL N  S+L
Subjt:  EQNENRKIKISINDHLDILTEILKRLDGPSLCAAACVCRLWCALARNDDSLWEHLCFRHVTSPPPSAVRSVVLALGGYKRLYMLCLRPVLRRLMNR-SDL

Query:  V-----LQLSLSLFCVDYYERNGFLSGDSAAAEAPSLRFLCNPVNV
        V     +QLSLSLFCVDYYER   L G   A  A SL FLCNPVNV
Subjt:  V-----LQLSLSLFCVDYYERNGFLSGDSAAAEAPSLRFLCNPVNV

SwissProt top hitse value%identityAlignment
Q7XAK4 F-box protein GID24.8e-0938.05Show/hide
Query:  DILTEILKRLDGPSLCAAACVCRLWCALARNDDSLWEHLCFRHVTSPPPS--AVRSVVLALGGYKRLYMLCLRP-------VLRRLMNRSDLV------L
        D++ E+L+R +  +L AAACV R W  LA  D+ LWE  C R   +   S   +R+VVL+LGG++RL+ + +RP       V R+   R   V      +
Subjt:  DILTEILKRLDGPSLCAAACVCRLWCALARNDDSLWEHLCFRHVTSPPPS--AVRSVVLALGGYKRLYMLCLRP-------VLRRLMNRSDLV------L

Query:  QLSLSLFCVDYYE
        QLSLSLF + +++
Subjt:  QLSLSLFCVDYYE

Q9LUB6 F-box protein SNE4.3e-3459.44Show/hide
Query:  QNENRKIKISINDHLDILTEILKRLDGPSLCAAACVCRLWCALARNDDSLWEHLCFRHVTSPPPSAVRSVVLALGGYKRLYMLCLRPVLRRL--MNRSDL
        Q  N+    SINDH D+L EIL+RLDG SLC+AACVCRLW A+ARN DS+WE LCFR V+  P  ++RSVV ALGGY+ LY LC+RPVL RL  +  +  
Subjt:  QNENRKIKISINDHLDILTEILKRLDGPSLCAAACVCRLWCALARNDDSLWEHLCFRHVTSPPPSAVRSVVLALGGYKRLYMLCLRPVLRRL--MNRSDL

Query:  VLQLSLSLFCVDYYER--NGFLSGDSAAAEAPSLRFLCNPVNV
         LQLSLSL+CV YYER   G   GD   A   SL FL  PVNV
Subjt:  VLQLSLSLFCVDYYER--NGFLSGDSAAAEAPSLRFLCNPVNV

Q9STX3 F-box protein GID21.7e-1137.9Show/hide
Query:  MEQNENRKIKISINDHLDILTEILKRLDGPSLCAAACVCRLWCALARNDDSLWEHLCFRHVTS--PPPSAVRSVVLALGGYKRLYMLCLRPVLR---RLM
        M+  E  +I  S  D  +++ E+LK +D  +L  ++CV ++W   A+ D+ LWE +C RH T+     + +RSVVLALGG++RL+ L L P+ +   R  
Subjt:  MEQNENRKIKISINDHLDILTEILKRLDGPSLCAAACVCRLWCALARNDDSLWEHLCFRHVTS--PPPSAVRSVVLALGGYKRLYMLCLRPVLR---RLM

Query:  NRSDLVLQLSLSLFCVDYYERNGF
           D  L+L+LSL  + YYE+  F
Subjt:  NRSDLVLQLSLSLFCVDYYERNGF

Arabidopsis top hitse value%identityAlignment
AT1G32420.1 F-box and associated interaction domains-containing protein8.1e-0429.51Show/hide
Query:  SINDHLDILTEILKRLDGPSLCAAACVCRLWCALARNDDSLWEHLCFRHVTSPPPSAVRSV
        ++N  LD+  EILK+L   SL    CV + W ++  +     + +  R +T PPP  ++ +
Subjt:  SINDHLDILTEILKRLDGPSLCAAACVCRLWCALARNDDSLWEHLCFRHVTSPPPSAVRSV

AT3G44326.1 F-box family protein6.2e-0427.48Show/hide
Query:  DIL-TEILKRLDGPSLCAAACVCRLWCALARNDDSLWEHLCFRHVTSPPPSAVRSVVLALGGYKRLYMLCLRPVLRRLMNRSDLVLQLSLS------LFC
        D+L + IL RLDG SL A +C C    +   +D+SLW   C     S   + V+S++       R +     P L       D+ + L  S      +  
Subjt:  DIL-TEILKRLDGPSLCAAACVCRLWCALARNDDSLWEHLCFRHVTSPPPSAVRSVVLALGGYKRLYMLCLRPVLRRLMNRSDLVLQLSLS------LFC

Query:  VDYYERNGFLSGDSAAAEAPSLRFLCNPVNV
        VD + ++  +       E  S  FLC+P+ V
Subjt:  VDYYERNGFLSGDSAAAEAPSLRFLCNPVNV

AT4G24210.1 F-box family protein1.2e-1237.9Show/hide
Query:  MEQNENRKIKISINDHLDILTEILKRLDGPSLCAAACVCRLWCALARNDDSLWEHLCFRHVTS--PPPSAVRSVVLALGGYKRLYMLCLRPVLR---RLM
        M+  E  +I  S  D  +++ E+LK +D  +L  ++CV ++W   A+ D+ LWE +C RH T+     + +RSVVLALGG++RL+ L L P+ +   R  
Subjt:  MEQNENRKIKISINDHLDILTEILKRLDGPSLCAAACVCRLWCALARNDDSLWEHLCFRHVTS--PPPSAVRSVVLALGGYKRLYMLCLRPVLR---RLM

Query:  NRSDLVLQLSLSLFCVDYYERNGF
           D  L+L+LSL  + YYE+  F
Subjt:  NRSDLVLQLSLSLFCVDYYERNGF

AT5G48170.1 F-box family protein3.0e-3559.44Show/hide
Query:  QNENRKIKISINDHLDILTEILKRLDGPSLCAAACVCRLWCALARNDDSLWEHLCFRHVTSPPPSAVRSVVLALGGYKRLYMLCLRPVLRRL--MNRSDL
        Q  N+    SINDH D+L EIL+RLDG SLC+AACVCRLW A+ARN DS+WE LCFR V+  P  ++RSVV ALGGY+ LY LC+RPVL RL  +  +  
Subjt:  QNENRKIKISINDHLDILTEILKRLDGPSLCAAACVCRLWCALARNDDSLWEHLCFRHVTSPPPSAVRSVVLALGGYKRLYMLCLRPVLRRL--MNRSDL

Query:  VLQLSLSLFCVDYYER--NGFLSGDSAAAEAPSLRFLCNPVNV
         LQLSLSL+CV YYER   G   GD   A   SL FL  PVNV
Subjt:  VLQLSLSLFCVDYYER--NGFLSGDSAAAEAPSLRFLCNPVNV


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGGAGCAAAACGAGAACAGGAAAATCAAAATCTCAATTAACGATCACCTCGATATTCTGACCGAAATCCTGAAGCGATTGGACGGGCCATCCCTCTGCGCCGCCGCCTG
CGTGTGCCGCCTCTGGTGTGCCCTGGCCCGAAACGACGATTCGCTCTGGGAACACCTCTGCTTCCGCCACGTCACCTCTCCGCCGCCCTCCGCCGTCCGCTCCGTCGTCC
TTGCCCTCGGCGGCTACAAGAGACTCTACATGCTCTGCCTCCGCCCTGTTCTCCGCCGATTGATGAATCGCTCCGATCTGGTCCTCCAGCTCTCCCTCTCCCTGTTCTGC
GTCGATTACTACGAGAGGAACGGTTTCCTCTCCGGCGATTCCGCCGCGGCGGAGGCTCCGTCGCTGCGGTTCCTCTGCAATCCGGTGAACGTATAA
mRNA sequenceShow/hide mRNA sequence
CCCATTTCTCGTAAATAAAAACCCACTAACCTCTCCCATTCGATTTGTAGCGTTTCTTCTTCAAAAAATCCTTCTCTCATTTTTGTTTTTGTTTTTTGTATCTCAAAATC
ATCAAGAAAACAAGGAGCTTAATCATGGAGCAAAACGAGAACAGGAAAATCAAAATCTCAATTAACGATCACCTCGATATTCTGACCGAAATCCTGAAGCGATTGGACGG
GCCATCCCTCTGCGCCGCCGCCTGCGTGTGCCGCCTCTGGTGTGCCCTGGCCCGAAACGACGATTCGCTCTGGGAACACCTCTGCTTCCGCCACGTCACCTCTCCGCCGC
CCTCCGCCGTCCGCTCCGTCGTCCTTGCCCTCGGCGGCTACAAGAGACTCTACATGCTCTGCCTCCGCCCTGTTCTCCGCCGATTGATGAATCGCTCCGATCTGGTCCTC
CAGCTCTCCCTCTCCCTGTTCTGCGTCGATTACTACGAGAGGAACGGTTTCCTCTCCGGCGATTCCGCCGCGGCGGAGGCTCCGTCGCTGCGGTTCCTCTGCAATCCGGT
GAACGTATAATTTGTCTTTTTCGTTTCGTTGTGAAACGTATTTTGAATTGGTTCGTCTCATTGGGCCGTAACTGTATACCAACTCACTCCTTTTTTTCTTCTTATTTATT
TCTATTTTTCGATTAAAATCTTCCTTCC
Protein sequenceShow/hide protein sequence
MEQNENRKIKISINDHLDILTEILKRLDGPSLCAAACVCRLWCALARNDDSLWEHLCFRHVTSPPPSAVRSVVLALGGYKRLYMLCLRPVLRRLMNRSDLVLQLSLSLFC
VDYYERNGFLSGDSAAAEAPSLRFLCNPVNV