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Sed0011492 (gene) of Chayote v1 genome

Gene IDSed0011492
OrganismSechium edule (Chayote v1)
DescriptionRING-CH-type domain-containing protein
Genome locationLG06:37538726..37540775
RNA-Seq ExpressionSed0011492
SyntenySed0011492
Gene Ontology termsNA
InterPro domainsIPR033275 - E3 ubiquitin-protein ligase MARCH-like


Homology Show/hide homology
GenBank top hitse value%identityAlignment
XP_022935629.1 uncharacterized protein LOC111442434 isoform X1 [Cucurbita moschata]2.6e-0637.89Show/hide
Query:  KIVECKICHDEDDESNMETPCSCCGSSK----------------------------------------------------EMSRMNLHVPVGMPD
        K+V+C+ICHDEDDES METPCSCCGS K                                                    EMSR+NLHVP GMPD
Subjt:  KIVECKICHDEDDESNMETPCSCCGSSK----------------------------------------------------EMSRMNLHVPVGMPD

XP_022935642.1 uncharacterized protein LOC111442434 isoform X2 [Cucurbita moschata]2.6e-0637.89Show/hide
Query:  KIVECKICHDEDDESNMETPCSCCGSSK----------------------------------------------------EMSRMNLHVPVGMPD
        K+V+C+ICHDEDDES METPCSCCGS K                                                    EMSR+NLHVP GMPD
Subjt:  KIVECKICHDEDDESNMETPCSCCGSSK----------------------------------------------------EMSRMNLHVPVGMPD

XP_023528859.1 uncharacterized protein LOC111791660 isoform X1 [Cucurbita pepo subsp. pepo]2.6e-0637.89Show/hide
Query:  KIVECKICHDEDDESNMETPCSCCGSSK----------------------------------------------------EMSRMNLHVPVGMPD
        K+V+C+ICHDEDDES METPCSCCGS K                                                    EMSR+NLHVP GMPD
Subjt:  KIVECKICHDEDDESNMETPCSCCGSSK----------------------------------------------------EMSRMNLHVPVGMPD

XP_023528862.1 uncharacterized protein LOC111791660 isoform X2 [Cucurbita pepo subsp. pepo]2.6e-0637.89Show/hide
Query:  KIVECKICHDEDDESNMETPCSCCGSSK----------------------------------------------------EMSRMNLHVPVGMPD
        K+V+C+ICHDEDDES METPCSCCGS K                                                    EMSR+NLHVP GMPD
Subjt:  KIVECKICHDEDDESNMETPCSCCGSSK----------------------------------------------------EMSRMNLHVPVGMPD

XP_023893582.1 uncharacterized protein LOC112005541 isoform X2 [Quercus suber]3.3e-0672.97Show/hide
Query:  GFVECKIVECKICHDEDDESNMETPCSCCGSSKEMSR
        G    K+VECKICHDED+ESNMETPCSCCGS K   R
Subjt:  GFVECKIVECKICHDEDDESNMETPCSCCGSSKEMSR

TrEMBL top hitse value%identityAlignment
A0A2N9IF02 RING-CH-type domain-containing protein2.8e-0681.25Show/hide
Query:  KIVECKICHDEDDESNMETPCSCCGSSKEMSR
        K+VECKICHDED+ESNMETPCSCCGS K   R
Subjt:  KIVECKICHDEDDESNMETPCSCCGSSKEMSR

A0A6J1F655 uncharacterized protein LOC111442434 isoform X21.2e-0637.89Show/hide
Query:  KIVECKICHDEDDESNMETPCSCCGSSK----------------------------------------------------EMSRMNLHVPVGMPD
        K+V+C+ICHDEDDES METPCSCCGS K                                                    EMSR+NLHVP GMPD
Subjt:  KIVECKICHDEDDESNMETPCSCCGSSK----------------------------------------------------EMSRMNLHVPVGMPD

A0A6J1FB67 uncharacterized protein LOC111442434 isoform X11.2e-0637.89Show/hide
Query:  KIVECKICHDEDDESNMETPCSCCGSSK----------------------------------------------------EMSRMNLHVPVGMPD
        K+V+C+ICHDEDDES METPCSCCGS K                                                    EMSR+NLHVP GMPD
Subjt:  KIVECKICHDEDDESNMETPCSCCGSSK----------------------------------------------------EMSRMNLHVPVGMPD

A0A6P6G223 uncharacterized protein LOC1074171212.8e-0675.76Show/hide
Query:  CKIVECKICHDEDDESNMETPCSCCGSSKEMSR
        CK+VEC+ICHDED+ SNMETPCSCCGS K   R
Subjt:  CKIVECKICHDEDDESNMETPCSCCGSSKEMSR

A0A6P9F3Y2 E3 ubiquitin-protein ligase MARCHF2-like isoform X12.8e-0672.22Show/hide
Query:  FVECKIVECKICHDEDDESNMETPCSCCGSSKEMSR
        F   K+VEC+ICHDED+ESNMETPCSCCGS K   R
Subjt:  FVECKIVECKICHDEDDESNMETPCSCCGSSKEMSR

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
AT2G01275.1 RING/FYVE/PHD zinc finger superfamily protein1.2e-0657.14Show/hide
Query:  EILLGGFVECKIVECKICHDEDDESNMETPCSCCGSSKEMSR
        E+L  G  +  + EC+ICHDED +SNMETPCSC GS K   R
Subjt:  EILLGGFVECKIVECKICHDEDDESNMETPCSCCGSSKEMSR

AT2G01275.2 RING/FYVE/PHD zinc finger superfamily protein1.2e-0657.14Show/hide
Query:  EILLGGFVECKIVECKICHDEDDESNMETPCSCCGSSKEMSR
        E+L  G  +  + EC+ICHDED +SNMETPCSC GS K   R
Subjt:  EILLGGFVECKIVECKICHDEDDESNMETPCSCCGSSKEMSR

AT5G38070.1 RING/FYVE/PHD zinc finger superfamily protein7.2e-0763.33Show/hide
Query:  ECKIVECKICHDEDDESNMETPCSCCGSSK
        E K V+C+ICHDED+++NM+TPCSC G+ K
Subjt:  ECKIVECKICHDEDDESNMETPCSCCGSSK

AT5G62460.1 RING/FYVE/PHD zinc finger superfamily protein5.7e-0456.67Show/hide
Query:  VECKICHDEDDESNMETPCSCCGSSKEMSR
        VEC+IC +ED   N+E+PCSC GS K   R
Subjt:  VECKICHDEDDESNMETPCSCCGSSKEMSR


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGAAGAACCACAAGCTGTGTTGTATGTTACAGTTGCTGACCTTGAGAATTGTTGGAATTCTTCTGCCTATATTTGTGATGGTTAGGGCACTTACTTCCATTCAACGACT
GCGTCATTATCAGGTTAGTAATGCCGTTTATATCTTGATTTGCTTTGAATATCTTTTGGCATTTGTAGTCATTTGGGAAATTCTCTTGGGAGGATTTGTTGAGTGCAAAA
TTGTTGAGTGCAAAATTTGTCATGATGAGGATGATGAATCAAATATGGAGACACCGTGCTCTTGCTGTGGCAGCTCGAAGGAGATGTCTAGAATGAACCTGCATGTACCT
GTAGGTATGCCTGATCAGAGTATCTCACTCCCTCTTCAAGAAGCGTATTGTACTGCCGCATAA
mRNA sequenceShow/hide mRNA sequence
ATTCTATTTGTAAAAAGGAAGAAAAAAGAAGGAAGGAGTTTAGAGTGAGTTAGGTCTGGAAGGACGAAGAAACAACGATCAAATGGATGCTGAAGCGAAGCGAAAGGCAT
TGTTTCGTGCGAAATTGAACGCCCAGAAGAAGGATAAGCGCATCGATTCTCCTCTCCTAAGTCTCCACAAACAAAGCATTGCCATGATTGTGATCGATGTGTACTTCAGT
TTGATCATCGTGTGTTTGGCTCGAGACATGTATTGGCCTGGGAAATTATTGTCGATTCTGGTGGGTTTAAATTGTTTGTGATACGACAAATGGTCAACTTCATATAAATT
GACTGTTTTGGTCAGTACTTTGAGTGTGAATAATGCATCACTTTAGCTGTTATGCAATATGGATTGCAAGAGGCATTGATGTAAAATGCCTCAGAAACAATTTATCTCAT
AGGATATAGGATGTAGGGTGATTTGTTTCTCTCATATTTTTATCATTATGACAGTTTGATTGACATAAAATCTCCAGTTTGAAACTGCTAATCATGTCAATATGTTGCAG
TTTATTGTTCTCCTCGTTTTACACCATACTCTACCAATCATAATTCATGAAGGTGGAGAGTATTTACATTTTTAATGGTTAGCTTGTTGTTCAGTTTTCCCTTTCTAGTT
TTCCTCCATTGTTGAGACCAATGAAGAACCACAAGCTGTGTTGTATGTTACAGTTGCTGACCTTGAGAATTGTTGGAATTCTTCTGCCTATATTTGTGATGGTTAGGGCA
CTTACTTCCATTCAACGACTGCGTCATTATCAGGTTAGTAATGCCGTTTATATCTTGATTTGCTTTGAATATCTTTTGGCATTTGTAGTCATTTGGGAAATTCTCTTGGG
AGGATTTGTTGAGTGCAAAATTGTTGAGTGCAAAATTTGTCATGATGAGGATGATGAATCAAATATGGAGACACCGTGCTCTTGCTGTGGCAGCTCGAAGGAGATGTCTA
GAATGAACCTGCATGTACCTGTAGGTATGCCTGATCAGAGTATCTCACTCCCTCTTCAAGAAGCGTATTGTACTGCCGCATAATTGCCGCATAATTCTCATATATTCTTT
CTCTG
Protein sequenceShow/hide protein sequence
MKNHKLCCMLQLLTLRIVGILLPIFVMVRALTSIQRLRHYQVSNAVYILICFEYLLAFVVIWEILLGGFVECKIVECKICHDEDDESNMETPCSCCGSSKEMSRMNLHVP
VGMPDQSISLPLQEAYCTAA