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Sed0011524 (gene) of Chayote v1 genome

Gene IDSed0011524
OrganismSechium edule (Chayote v1)
DescriptionRNase H domain-containing protein
Genome locationLG13:22836213..22837410
RNA-Seq ExpressionSed0011524
SyntenySed0011524
Gene Ontology termsGO:0003676 - nucleic acid binding (molecular function)
GO:0004523 - RNA-DNA hybrid ribonuclease activity (molecular function)
InterPro domainsIPR002156 - Ribonuclease H domain
IPR012337 - Ribonuclease H-like superfamily
IPR036397 - Ribonuclease H superfamily
IPR044730 - Ribonuclease H-like domain, plant type


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAF7819670.1 uncharacterized protein G2W53_025125 [Senna tora]8.1e-1238.14Show/hide
Query:  LNTNTAINLEEGR-SGYGAIIRNYKGEVIFSMCQSIEWIVNPEIVEALAIIEGVEMAFEFGFQHIEVESDTLRMINLLQKYCKNQTEVGGIIEGTLQMAR
        L  N   ++ EG  S  G IIRN+ G  + +M +  E     + +EALA+ EG+ +A      +IEVE D+ ++  LL K   +Q+ +G IIE  L+++ 
Subjt:  LNTNTAINLEEGR-SGYGAIIRNYKGEVIFSMCQSIEWIVNPEIVEALAIIEGVEMAFEFGFQHIEVESDTLRMINLLQKYCKNQTEVGGIIEGTLQMAR

Query:  NFKFISFTWCNRETNILA
         F F+SF W  RETN LA
Subjt:  NFKFISFTWCNRETNILA

TXG47194.1 hypothetical protein EZV62_026488 [Acer yangbiense]9.6e-1336.07Show/hide
Query:  YKLNTNTAINLEEGRSGYGAIIRNYKGEVIFSMCQSIEWIVNPEIVEALAIIEGVEMAFEFGFQHIEVESDTLRMINLLQKYCKNQ---TEVGGIIEGTL
        +K+NT+ A+N++   +G G +IRN++G+V+ S C++     +P I EALA++EG+ +A   GF    +ESD L ++   Q  C+N+   ++VG +I+  L
Subjt:  YKLNTNTAINLEEGRSGYGAIIRNYKGEVIFSMCQSIEWIVNPEIVEALAIIEGVEMAFEFGFQHIEVESDTLRMINLLQKYCKNQ---TEVGGIIEGTL

Query:  QMARNFKFISFTWCNRETNILA
           R+F F SF    R  N +A
Subjt:  QMARNFKFISFTWCNRETNILA

TXG48983.1 hypothetical protein EZV62_024858 [Acer yangbiense]8.1e-1232.74Show/hide
Query:  YKLNTNTAINLEEGRSGYGAIIRNYKGEVIFSMCQSIEWIVNPEIVEALAIIEGVEMAFEFGFQHIEVESDTLRMINLLQKYCKNQTEVGGIIEGTLQMA
        +K+NT+ A++++E   G   +IRN++G+V+ S C++ +   +P+I EALA++EG+ +A   GF    +ESD L ++  +       +EVG +++  L   
Subjt:  YKLNTNTAINLEEGRSGYGAIIRNYKGEVIFSMCQSIEWIVNPEIVEALAIIEGVEMAFEFGFQHIEVESDTLRMINLLQKYCKNQTEVGGIIEGTLQMA

Query:  RNFKFISFTWCNR
        R   F SF++  R
Subjt:  RNFKFISFTWCNR

TXG69190.1 hypothetical protein EZV62_004125 [Acer yangbiense]6.2e-1233.33Show/hide
Query:  NYKLNTNTAINLEEGRSGYGAIIRNYKGEVIFSMCQSIEWIVNPEIVEALAIIEGVEMAFEFGFQHIEVESDTLRMINLLQKYCKNQTEVGGIIEGTLQM
        +YK+NT+  ++     +G G +IR+  G V+ S+CQS   ++ P+ VEA+A++ G  +A E G     +ESD+L ++NL+      + E+G ++   L M
Subjt:  NYKLNTNTAINLEEGRSGYGAIIRNYKGEVIFSMCQSIEWIVNPEIVEALAIIEGVEMAFEFGFQHIEVESDTLRMINLLQKYCKNQTEVGGIIEGTLQM

Query:  ARNFKFISFTWCNRETNILA
          N  F S ++  R TN +A
Subjt:  ARNFKFISFTWCNRETNILA

XP_022143535.1 uncharacterized protein LOC111013412 [Momordica charantia]5.3e-1135.83Show/hide
Query:  NYKLNTNTAINLEEGRSGYGAIIRNYKGEVIFSMCQSIEWIVNPEIVEALAIIEGVEMAFEFGFQHIEVESDTLRMINLLQKYCKNQTEVGGIIEGTLQM
        ++KLNTN A   +    G G I+R+ KGEVI + C+ I    N   +E +AI EG+    +   + I +ESD+L  I+LL + C++QTE+  ++E   QM
Subjt:  NYKLNTNTAINLEEGRSGYGAIIRNYKGEVIFSMCQSIEWIVNPEIVEALAIIEGVEMAFEFGFQHIEVESDTLRMINLLQKYCKNQTEVGGIIEGTLQM

Query:  ARNFKFISFTWCNRETNILA
         ++ + +S    +RE N +A
Subjt:  ARNFKFISFTWCNRETNILA

TrEMBL top hitse value%identityAlignment
A0A2N9E9A1 Reverse transcriptase domain-containing protein2.0e-1134.45Show/hide
Query:  YKLNTNTAINLEEGRSGYGAIIRNYKGEVIFSMCQSIEWIVNPEIVEALAIIEGVEMAFEFGFQHIEVESDTLRMINLLQKYCKNQTEVGGIIEGTLQMA
        YK+N + A+  E   +G GAI+RN++GEV+ ++CQ I +  + E VEA A    V    + G Q +++E D+L++I  LQ+     T  G +I  T  +A
Subjt:  YKLNTNTAINLEEGRSGYGAIIRNYKGEVIFSMCQSIEWIVNPEIVEALAIIEGVEMAFEFGFQHIEVESDTLRMINLLQKYCKNQTEVGGIIEGTLQMA

Query:  RNFKFISFTWCNRETNILA
        +N     F    R+ N +A
Subjt:  RNFKFISFTWCNRETNILA

A0A5C7GQX3 RNase H domain-containing protein4.7e-1336.07Show/hide
Query:  YKLNTNTAINLEEGRSGYGAIIRNYKGEVIFSMCQSIEWIVNPEIVEALAIIEGVEMAFEFGFQHIEVESDTLRMINLLQKYCKNQ---TEVGGIIEGTL
        +K+NT+ A+N++   +G G +IRN++G+V+ S C++     +P I EALA++EG+ +A   GF    +ESD L ++   Q  C+N+   ++VG +I+  L
Subjt:  YKLNTNTAINLEEGRSGYGAIIRNYKGEVIFSMCQSIEWIVNPEIVEALAIIEGVEMAFEFGFQHIEVESDTLRMINLLQKYCKNQ---TEVGGIIEGTL

Query:  QMARNFKFISFTWCNRETNILA
           R+F F SF    R  N +A
Subjt:  QMARNFKFISFTWCNRETNILA

A0A5C7GW84 RNase H domain-containing protein3.9e-1232.74Show/hide
Query:  YKLNTNTAINLEEGRSGYGAIIRNYKGEVIFSMCQSIEWIVNPEIVEALAIIEGVEMAFEFGFQHIEVESDTLRMINLLQKYCKNQTEVGGIIEGTLQMA
        +K+NT+ A++++E   G   +IRN++G+V+ S C++ +   +P+I EALA++EG+ +A   GF    +ESD L ++  +       +EVG +++  L   
Subjt:  YKLNTNTAINLEEGRSGYGAIIRNYKGEVIFSMCQSIEWIVNPEIVEALAIIEGVEMAFEFGFQHIEVESDTLRMINLLQKYCKNQTEVGGIIEGTLQMA

Query:  RNFKFISFTWCNR
        R   F SF++  R
Subjt:  RNFKFISFTWCNR

A0A5C7IIT4 Uncharacterized protein3.0e-1233.33Show/hide
Query:  NYKLNTNTAINLEEGRSGYGAIIRNYKGEVIFSMCQSIEWIVNPEIVEALAIIEGVEMAFEFGFQHIEVESDTLRMINLLQKYCKNQTEVGGIIEGTLQM
        +YK+NT+  ++     +G G +IR+  G V+ S+CQS   ++ P+ VEA+A++ G  +A E G     +ESD+L ++NL+      + E+G ++   L M
Subjt:  NYKLNTNTAINLEEGRSGYGAIIRNYKGEVIFSMCQSIEWIVNPEIVEALAIIEGVEMAFEFGFQHIEVESDTLRMINLLQKYCKNQTEVGGIIEGTLQM

Query:  ARNFKFISFTWCNRETNILA
          N  F S ++  R TN +A
Subjt:  ARNFKFISFTWCNRETNILA

A0A6J1CP26 uncharacterized protein LOC1110134122.6e-1135.83Show/hide
Query:  NYKLNTNTAINLEEGRSGYGAIIRNYKGEVIFSMCQSIEWIVNPEIVEALAIIEGVEMAFEFGFQHIEVESDTLRMINLLQKYCKNQTEVGGIIEGTLQM
        ++KLNTN A   +    G G I+R+ KGEVI + C+ I    N   +E +AI EG+    +   + I +ESD+L  I+LL + C++QTE+  ++E   QM
Subjt:  NYKLNTNTAINLEEGRSGYGAIIRNYKGEVIFSMCQSIEWIVNPEIVEALAIIEGVEMAFEFGFQHIEVESDTLRMINLLQKYCKNQTEVGGIIEGTLQM

Query:  ARNFKFISFTWCNRETNILA
         ++ + +S    +RE N +A
Subjt:  ARNFKFISFTWCNRETNILA

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGTTTCGTATACTTGGAAGAGTATATTGTGGGGACGAGAGCTATTGCCGAAAGGCATTAGGTGGCGAATCAGTAATGGGAAAAATTGAAAACTATAAATTAAATACGAA
TACTGCTATAAATTTAGAGGAAGGAAGAAGTGGATATGGGGCTATTATTCGAAATTACAAGGGTGAGGTAATCTTCTCAATGTGTCAATCGATCGAGTGGATTGTTAATC
CAGAAATTGTGGAAGCGTTAGCTATTATAGAAGGAGTGGAAATGGCCTTTGAATTTGGTTTCCAACATATTGAGGTGGAGTCTGATACCTTGCGTATGATTAATTTGTTA
CAAAAATATTGCAAGAATCAGACAGAGGTTGGAGGAATCATTGAAGGAACACTGCAAATGGCAAGAAATTTCAAGTTTATCTCTTTCACATGGTGTAATCGGGAGACAAA
TATTCTTGCCATAAACTAG
mRNA sequenceShow/hide mRNA sequence
ATGTTTCGTATACTTGGAAGAGTATATTGTGGGGACGAGAGCTATTGCCGAAAGGCATTAGGTGGCGAATCAGTAATGGGAAAAATTGAAAACTATAAATTAAATACGAA
TACTGCTATAAATTTAGAGGAAGGAAGAAGTGGATATGGGGCTATTATTCGAAATTACAAGGGTGAGGTAATCTTCTCAATGTGTCAATCGATCGAGTGGATTGTTAATC
CAGAAATTGTGGAAGCGTTAGCTATTATAGAAGGAGTGGAAATGGCCTTTGAATTTGGTTTCCAACATATTGAGGTGGAGTCTGATACCTTGCGTATGATTAATTTGTTA
CAAAAATATTGCAAGAATCAGACAGAGGTTGGAGGAATCATTGAAGGAACACTGCAAATGGCAAGAAATTTCAAGTTTATCTCTTTCACATGGTGTAATCGGGAGACAAA
TATTCTTGCCATAAACTAG
Protein sequenceShow/hide protein sequence
MFRILGRVYCGDESYCRKALGGESVMGKIENYKLNTNTAINLEEGRSGYGAIIRNYKGEVIFSMCQSIEWIVNPEIVEALAIIEGVEMAFEFGFQHIEVESDTLRMINLL
QKYCKNQTEVGGIIEGTLQMARNFKFISFTWCNRETNILAIN