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Sed0011533 (gene) of Chayote v1 genome

Gene IDSed0011533
OrganismSechium edule (Chayote v1)
DescriptionCCHC-type domain-containing protein
Genome locationLG07:12375270..12376288
RNA-Seq ExpressionSed0011533
SyntenySed0011533
Gene Ontology termsGO:0003676 - nucleic acid binding (molecular function)
GO:0008270 - zinc ion binding (molecular function)
InterPro domainsIPR001878 - Zinc finger, CCHC-type
IPR025836 - Zinc knuckle CX2CX4HX4C


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAF7114636.1 hypothetical protein RHSIM_RhsimUnG0081100 [Rhododendron simsii]3.1e-0944.59Show/hide
Query:  FLRLKVSIDIRLPLRRALKVKSGAMTDEK-WVRILYEKLPDFCHGCGRIGHLASGCTFVVIGEGLRFPFGEDLR
        FLR++V ID+   L +   ++    +DE  W+   YEKLPDFC+ CGR+GH   GC FV   EG+   +G DLR
Subjt:  FLRLKVSIDIRLPLRRALKVKSGAMTDEK-WVRILYEKLPDFCHGCGRIGHLASGCTFVVIGEGLRFPFGEDLR

OQU92454.1 hypothetical protein SORBI_3001G347001 [Sorghum bicolor]2.4e-0937.61Show/hide
Query:  MGKFLRLKVSIDIRLPLRRALKVKSGAMTDEKWVRILYEKLPDFCHGCGRIGHLASGCTFVVIGEGLRFPFGEDLREPTNYFKGDRSDFQRHGGRGRGRG
        +G FLR+KV IDIR PL R + ++     D+ W  I YE LP+FC+GCG +GH+   C   V  E     FG+ LR     +KG + D ++    G   G
Subjt:  MGKFLRLKVSIDIRLPLRRALKVKSGAMTDEKWVRILYEKLPDFCHGCGRIGHLASGCTFVVIGEGLRFPFGEDLREPTNYFKGDRSDFQRHGGRGRGRG

Query:  RGRLNEHR-SEDLTFSE
         G+    R S  L+F++
Subjt:  RGRLNEHR-SEDLTFSE

TXG61726.1 hypothetical protein EZV62_013089 [Acer yangbiense]2.4e-0941.18Show/hide
Query:  GKFLRLKVSIDIRLPLRRALKVKSGAMTDEKWVRILYEKLPDFCHGCGRIGHLASGCTFVV------------IGEGLRFPFGEDLREPTNYFKGDRSDF
        GK+LR+KV IDI  PL+R L++K G   D   V + YE+LPDFC  CGRIGH+   CT  +             G+ LR P G D  +     +G  S F
Subjt:  GKFLRLKVSIDIRLPLRRALKVKSGAMTDEKWVRILYEKLPDFCHGCGRIGHLASGCTFVV------------IGEGLRFPFGEDLREPTNYFKGDRSDF

Query:  QR
        +R
Subjt:  QR

XP_039815364.1 uncharacterized protein LOC120678302 [Panicum virgatum]1.3e-1244.76Show/hide
Query:  GKFLRLKVSIDIRLPLRRALKVKSGAMTDEKWVRILYEKLPDFCHGCGRIGHLASGCTFVVIGEGLRFPFGEDLR--EPTNYFKGD--RSDFQRHGGRGR
        G+FLR+KV I+I  PLRR + +  G    E+W  I YE LPDFC+ CGRIGH    C    +  G + PFG +LR   P   F G+  RS   R  G GR
Subjt:  GKFLRLKVSIDIRLPLRRALKVKSGAMTDEKWVRILYEKLPDFCHGCGRIGHLASGCTFVVIGEGLRFPFGEDLR--EPTNYFKGD--RSDFQRHGGRGR

Query:  GRGRG
          G G
Subjt:  GRGRG

XP_039827601.1 uncharacterized protein LOC120689378 [Panicum virgatum]3.9e-1244.76Show/hide
Query:  GKFLRLKVSIDIRLPLRRALKVKSGAMTDEKWVRILYEKLPDFCHGCGRIGHLASGCTFVVIGEGLRFPFGEDLR--EPTNYFKGD--RSDFQRHGGRGR
        G+FLR+KV I+I  PLRR + +  G    E+W  I YE LPDFC+ CGRIGH    C   +  E  + PFG +LR   P   F G+  RS   R  G GR
Subjt:  GKFLRLKVSIDIRLPLRRALKVKSGAMTDEKWVRILYEKLPDFCHGCGRIGHLASGCTFVVIGEGLRFPFGEDLR--EPTNYFKGD--RSDFQRHGGRGR

Query:  GRGRG
          G G
Subjt:  GRGRG

TrEMBL top hitse value%identityAlignment
A0A1Z5S941 CCHC-type domain-containing protein1.1e-0937.61Show/hide
Query:  MGKFLRLKVSIDIRLPLRRALKVKSGAMTDEKWVRILYEKLPDFCHGCGRIGHLASGCTFVVIGEGLRFPFGEDLREPTNYFKGDRSDFQRHGGRGRGRG
        +G FLR+KV IDIR PL R + ++     D+ W  I YE LP+FC+GCG +GH+   C   V  E     FG+ LR     +KG + D ++    G   G
Subjt:  MGKFLRLKVSIDIRLPLRRALKVKSGAMTDEKWVRILYEKLPDFCHGCGRIGHLASGCTFVVIGEGLRFPFGEDLREPTNYFKGDRSDFQRHGGRGRGRG

Query:  RGRLNEHR-SEDLTFSE
         G+    R S  L+F++
Subjt:  RGRLNEHR-SEDLTFSE

A0A5C7HXM5 CCHC-type domain-containing protein5.7e-0938.46Show/hide
Query:  MGKFLRLKVSIDIRLPLRRALKVKSGAMTDEKWVRILYEKLPDFCHGCGRIGHLASGCTFVVIGE---GLRFPFGEDLREPTNYFKGDRSDFQRHGGRGR
        M KFLR++V ID+ +PLRR L+V +     E  + + YE+LPDFC  CG +GH    C   + G+   G  F +G  +R PT         F+R+GG GR
Subjt:  MGKFLRLKVSIDIRLPLRRALKVKSGAMTDEKWVRILYEKLPDFCHGCGRIGHLASGCTFVVIGE---GLRFPFGEDLREPTNYFKGDRSDFQRHGGRGR

Query:  G---RGRGRLNEHRSED
            RG G     +S D
Subjt:  G---RGRGRLNEHRSED

A0A5C7HZB5 CCHC-type domain-containing protein1.1e-0941.18Show/hide
Query:  GKFLRLKVSIDIRLPLRRALKVKSGAMTDEKWVRILYEKLPDFCHGCGRIGHLASGCTFVV------------IGEGLRFPFGEDLREPTNYFKGDRSDF
        GK+LR+KV IDI  PL+R L++K G   D   V + YE+LPDFC  CGRIGH+   CT  +             G+ LR P G D  +     +G  S F
Subjt:  GKFLRLKVSIDIRLPLRRALKVKSGAMTDEKWVRILYEKLPDFCHGCGRIGHLASGCTFVV------------IGEGLRFPFGEDLREPTNYFKGDRSDF

Query:  QR
        +R
Subjt:  QR

K3ZNG2 CCHC-type domain-containing protein1.5e-0946.67Show/hide
Query:  GKFLRLKVSIDIRLPLRRALKVKSGAMTDEKWVRILYEKLPDFCHGCGRIGHLASGCTFVVIGEGLRFPFGEDLR
        G+ LR+KV +DIRLPLRR + V  G    ++W  + YE LP+FC+ CG IGH+   CT   +G+  R PF   LR
Subjt:  GKFLRLKVSIDIRLPLRRALKVKSGAMTDEKWVRILYEKLPDFCHGCGRIGHLASGCTFVVIGEGLRFPFGEDLR

K4AML8 CCHC-type domain-containing protein1.3e-0847.14Show/hide
Query:  GKFLRLKVSIDIRLPLRRALKVKSGAMTDEKWVRILYEKLPDFCHGCGRIGHLASGCTFVVIGEGLRFPF
        G+ LR+KV +DIRLPLRR + V  G    ++W  + YE LP+FC+ CG IGH    CT   +G+  R PF
Subjt:  GKFLRLKVSIDIRLPLRRALKVKSGAMTDEKWVRILYEKLPDFCHGCGRIGHLASGCTFVVIGEGLRFPF

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGGGAAAATTTCTAAGGCTCAAGGTGTCGATTGACATTCGTTTACCGCTGAGAAGAGCTCTGAAGGTGAAGAGTGGAGCAATGACGGATGAAAAATGGGTTCGAATTTT
GTATGAAAAATTACCTGATTTTTGTCATGGTTGTGGGAGAATAGGTCACTTGGCTAGTGGATGCACTTTTGTGGTCATAGGTGAAGGTCTTCGGTTTCCATTCGGAGAAG
ATTTGAGAGAGCCGACGAATTACTTCAAAGGGGATAGATCTGATTTTCAGAGGCATGGAGGAAGAGGGAGAGGTCGTGGAAGAGGAAGATTGAATGAACATAGATCAGAG
GACCTCACTTTTTCGGAAGGGCGCGCTTGTGAGAAGGTTGGTTGCGATCAAAGAAGATCGGAGGAGATGAAGGAAGAGAAGTTTCAGGCGAGATTTGAGAGGAGCTCTAC
TACCAACGGTTCGCCGGACTTTACCTCGGGAGAAGGCGAGGTTTTTCGGGGTGAAGGTCAGTTTGCGCAGAAGAATTCGGCCAATTTTGGGGCTAGGTCAGATATTGATG
GGTTTAGAGACCCAATTGGACCAATTGCGGAGGATTTAACCCTTTTCCCTTCAAAAATTGGAGGAGCAGCAAGATTTTTCAAGGAATGA
mRNA sequenceShow/hide mRNA sequence
ATGGGAAAATTTCTAAGGCTCAAGGTGTCGATTGACATTCGTTTACCGCTGAGAAGAGCTCTGAAGGTGAAGAGTGGAGCAATGACGGATGAAAAATGGGTTCGAATTTT
GTATGAAAAATTACCTGATTTTTGTCATGGTTGTGGGAGAATAGGTCACTTGGCTAGTGGATGCACTTTTGTGGTCATAGGTGAAGGTCTTCGGTTTCCATTCGGAGAAG
ATTTGAGAGAGCCGACGAATTACTTCAAAGGGGATAGATCTGATTTTCAGAGGCATGGAGGAAGAGGGAGAGGTCGTGGAAGAGGAAGATTGAATGAACATAGATCAGAG
GACCTCACTTTTTCGGAAGGGCGCGCTTGTGAGAAGGTTGGTTGCGATCAAAGAAGATCGGAGGAGATGAAGGAAGAGAAGTTTCAGGCGAGATTTGAGAGGAGCTCTAC
TACCAACGGTTCGCCGGACTTTACCTCGGGAGAAGGCGAGGTTTTTCGGGGTGAAGGTCAGTTTGCGCAGAAGAATTCGGCCAATTTTGGGGCTAGGTCAGATATTGATG
GGTTTAGAGACCCAATTGGACCAATTGCGGAGGATTTAACCCTTTTCCCTTCAAAAATTGGAGGAGCAGCAAGATTTTTCAAGGAATGA
Protein sequenceShow/hide protein sequence
MGKFLRLKVSIDIRLPLRRALKVKSGAMTDEKWVRILYEKLPDFCHGCGRIGHLASGCTFVVIGEGLRFPFGEDLREPTNYFKGDRSDFQRHGGRGRGRGRGRLNEHRSE
DLTFSEGRACEKVGCDQRRSEEMKEEKFQARFERSSTTNGSPDFTSGEGEVFRGEGQFAQKNSANFGARSDIDGFRDPIGPIAEDLTLFPSKIGGAARFFKE