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Sed0011552 (gene) of Chayote v1 genome

Gene IDSed0011552
OrganismSechium edule (Chayote v1)
DescriptionDynein light chain
Genome locationLG04:25853868..25855274
RNA-Seq ExpressionSed0011552
SyntenySed0011552
Gene Ontology termsGO:0007017 - microtubule-based process (biological process)
GO:0010274 - hydrotropism (biological process)
GO:0005737 - cytoplasm (cellular component)
GO:0005874 - microtubule (cellular component)
GO:0030286 - dynein complex (cellular component)
GO:0045505 - dynein intermediate chain binding (molecular function)
GO:0051959 - dynein light intermediate chain binding (molecular function)
InterPro domainsIPR001372 - Dynein light chain, type 1/2
IPR037177 - Dynein light chain superfamily


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KGN58830.1 hypothetical protein Csa_001625 [Cucumis sativus]1.6e-4685.19Show/hide
Query:  MLEGKAVVCETDMPERIQGHVLELAYKALDQHEVSDCQSIARFIKQRFDEAYGPSWHCVAGKGFGGCITHLCGSFIFFHVDAMEFLIFKDGRDDCSKIIE
        MLEGKAVV ETDMP+ IQ HVLELAYKALDQHEVSDCQSIA FIKQRFDEAYGP+WHCVAGK FGGCITHLCGS+IFFHVD MEFL+FKDGR DC K +E
Subjt:  MLEGKAVVCETDMPERIQGHVLELAYKALDQHEVSDCQSIARFIKQRFDEAYGPSWHCVAGKGFGGCITHLCGSFIFFHVDAMEFLIFKDGRDDCSKIIE

Query:  ETVGVRQK
        ETVGV +K
Subjt:  ETVGVRQK

PON90790.1 Dynein light chain [Trema orientale]8.6e-4074.07Show/hide
Query:  MLEGKAVVCETDMPERIQGHVLELAYKALDQHEVSDCQSIARFIKQRFDEAYGPSWHCVAGKGFGGCITHLCGSFIFFHVDAMEFLIFKDGRDDCSKIIE
        MLEGKAVV ETDMPE +Q HV+ELAYKALD HEVSDCQSIA +IKQ+FDE YGP+W+CV GK FG CITHLCGSFIFFHV+ MEFLIFKDG+ D ++ ++
Subjt:  MLEGKAVVCETDMPERIQGHVLELAYKALDQHEVSDCQSIARFIKQRFDEAYGPSWHCVAGKGFGGCITHLCGSFIFFHVDAMEFLIFKDGRDDCSKIIE

Query:  ETVGVRQK
        E +GV QK
Subjt:  ETVGVRQK

XP_004305172.1 PREDICTED: dynein light chain LC6, flagellar outer arm-like [Fragaria vesca subsp. vesca]6.6e-4075.7Show/hide
Query:  MLEGKAVVCETDMPERIQGHVLELAYKALDQHEVSDCQSIARFIKQRFDEAYGPSWHCVAGKGFGGCITHLCGSFIFFHVDAMEFLIFKDGRDDCSKIIE
        MLEGKAVV ETDMP  +Q H +ELAYKALD HEVSDC+SIA +IKQ+FDEAYGP+WHCV GK FG CITHLCGSFIFFHV+ MEFLIFKDG D C K  E
Subjt:  MLEGKAVVCETDMPERIQGHVLELAYKALDQHEVSDCQSIARFIKQRFDEAYGPSWHCVAGKGFGGCITHLCGSFIFFHVDAMEFLIFKDGRDDCSKIIE

Query:  ETVGVRQ
        E +GV Q
Subjt:  ETVGVRQ

XP_008442502.1 PREDICTED: dynein light chain 1, cytoplasmic-like [Cucumis melo]1.5e-4787.04Show/hide
Query:  MLEGKAVVCETDMPERIQGHVLELAYKALDQHEVSDCQSIARFIKQRFDEAYGPSWHCVAGKGFGGCITHLCGSFIFFHVDAMEFLIFKDGRDDCSKIIE
        MLEGKAVV ETDMP+ IQ HVLELAYKALDQHEVSDCQSIA FIKQRFDEAYGP+WHCVAGK FGGCITHLCGSFIFFHVD MEFL+FKDGR DCSK +E
Subjt:  MLEGKAVVCETDMPERIQGHVLELAYKALDQHEVSDCQSIARFIKQRFDEAYGPSWHCVAGKGFGGCITHLCGSFIFFHVDAMEFLIFKDGRDDCSKIIE

Query:  ETVGVRQK
        ETVGV +K
Subjt:  ETVGVRQK

XP_022145583.1 dynein light chain-like [Momordica charantia]5.6e-4787.16Show/hide
Query:  MLEGKAVVCETDMPERIQGHVLELAYKALDQHEVSDCQSIARFIKQRFDEAYGPSWHCVAGKGFGGCITHLCGSFIFFHVDAMEFLIFKDGRDDCSKIIE
        MLEGKA V ETDMPE IQ HVLELAYKALD HEVSDCQSIARFIKQRFDEAYGP+WHCV GK FGGCITHLCGSFIFFHVD MEFLIFKDGR D SK IE
Subjt:  MLEGKAVVCETDMPERIQGHVLELAYKALDQHEVSDCQSIARFIKQRFDEAYGPSWHCVAGKGFGGCITHLCGSFIFFHVDAMEFLIFKDGRDDCSKIIE

Query:  ETVGVRQKT
        ET+GVRQK+
Subjt:  ETVGVRQKT

TrEMBL top hitse value%identityAlignment
A0A061ERU3 Dynein light chain9.3e-4075Show/hide
Query:  MLEGKAVVCETDMPERIQGHVLELAYKALDQHEVSDCQSIARFIKQRFDEAYGPSWHCVAGKGFGGCITHLCGSFIFFHVDAMEFLIFKDGRDDCSKIIE
        MLEGKAVV ETDMPE +Q  V+ELAY+ALD HEVSDCQSIA +IKQ+FDEAYGP+WHCVAGK FG CI+HLCGSFIFFHV+ MEFLIFKDG  D S+  E
Subjt:  MLEGKAVVCETDMPERIQGHVLELAYKALDQHEVSDCQSIARFIKQRFDEAYGPSWHCVAGKGFGGCITHLCGSFIFFHVDAMEFLIFKDGRDDCSKIIE

Query:  ETVGVRQK
        E +GV Q+
Subjt:  ETVGVRQK

A0A0A0LA26 Dynein light chain7.9e-4785.19Show/hide
Query:  MLEGKAVVCETDMPERIQGHVLELAYKALDQHEVSDCQSIARFIKQRFDEAYGPSWHCVAGKGFGGCITHLCGSFIFFHVDAMEFLIFKDGRDDCSKIIE
        MLEGKAVV ETDMP+ IQ HVLELAYKALDQHEVSDCQSIA FIKQRFDEAYGP+WHCVAGK FGGCITHLCGS+IFFHVD MEFL+FKDGR DC K +E
Subjt:  MLEGKAVVCETDMPERIQGHVLELAYKALDQHEVSDCQSIARFIKQRFDEAYGPSWHCVAGKGFGGCITHLCGSFIFFHVDAMEFLIFKDGRDDCSKIIE

Query:  ETVGVRQK
        ETVGV +K
Subjt:  ETVGVRQK

A0A1S3B5U2 Dynein light chain7.1e-4887.04Show/hide
Query:  MLEGKAVVCETDMPERIQGHVLELAYKALDQHEVSDCQSIARFIKQRFDEAYGPSWHCVAGKGFGGCITHLCGSFIFFHVDAMEFLIFKDGRDDCSKIIE
        MLEGKAVV ETDMP+ IQ HVLELAYKALDQHEVSDCQSIA FIKQRFDEAYGP+WHCVAGK FGGCITHLCGSFIFFHVD MEFL+FKDGR DCSK +E
Subjt:  MLEGKAVVCETDMPERIQGHVLELAYKALDQHEVSDCQSIARFIKQRFDEAYGPSWHCVAGKGFGGCITHLCGSFIFFHVDAMEFLIFKDGRDDCSKIIE

Query:  ETVGVRQK
        ETVGV +K
Subjt:  ETVGVRQK

A0A2P5EZ32 Dynein light chain4.2e-4074.07Show/hide
Query:  MLEGKAVVCETDMPERIQGHVLELAYKALDQHEVSDCQSIARFIKQRFDEAYGPSWHCVAGKGFGGCITHLCGSFIFFHVDAMEFLIFKDGRDDCSKIIE
        MLEGKAVV ETDMPE +Q HV+ELAYKALD HEVSDCQSIA +IKQ+FDE YGP+W+CV GK FG CITHLCGSFIFFHV+ MEFLIFKDG+ D ++ ++
Subjt:  MLEGKAVVCETDMPERIQGHVLELAYKALDQHEVSDCQSIARFIKQRFDEAYGPSWHCVAGKGFGGCITHLCGSFIFFHVDAMEFLIFKDGRDDCSKIIE

Query:  ETVGVRQK
        E +GV QK
Subjt:  ETVGVRQK

A0A6J1CWC6 Dynein light chain2.7e-4787.16Show/hide
Query:  MLEGKAVVCETDMPERIQGHVLELAYKALDQHEVSDCQSIARFIKQRFDEAYGPSWHCVAGKGFGGCITHLCGSFIFFHVDAMEFLIFKDGRDDCSKIIE
        MLEGKA V ETDMPE IQ HVLELAYKALD HEVSDCQSIARFIKQRFDEAYGP+WHCV GK FGGCITHLCGSFIFFHVD MEFLIFKDGR D SK IE
Subjt:  MLEGKAVVCETDMPERIQGHVLELAYKALDQHEVSDCQSIARFIKQRFDEAYGPSWHCVAGKGFGGCITHLCGSFIFFHVDAMEFLIFKDGRDDCSKIIE

Query:  ETVGVRQKT
        ET+GVRQK+
Subjt:  ETVGVRQKT

SwissProt top hitse value%identityAlignment
O02414 Dynein light chain LC6, flagellar outer arm7.7e-1539.56Show/hide
Query:  MLEGKAVVCETDMPERIQGHVLELAYKALDQHEVSDCQSIARFIKQRFDEAYGPSWHCVAGKGFGGCITHLCGSFIFFHVDAMEFLIFKDG
        M E KAV+   DMPE +Q   ++ A +AL++  +   + IA +IK+ FD+ Y P+WHC+ G+ FG  +TH    FI+F++  +  L+FK G
Subjt:  MLEGKAVVCETDMPERIQGHVLELAYKALDQHEVSDCQSIARFIKQRFDEAYGPSWHCVAGKGFGGCITHLCGSFIFFHVDAMEFLIFKDG

O96860 Dynein light chain 2, cytoplasmic1.3e-1438.46Show/hide
Query:  MLEGKAVVCETDMPERIQGHVLELAYKALDQHEVSDCQSIARFIKQRFDEAYGPSWHCVAGKGFGGCITHLCGSFIFFHVDAMEFLIFKDG
        M + KAV+   DM E +Q   ++ A +AL+++ +   + IA FIK+ FD+ Y P+WHC+ G+ FG  +TH    FI+F++  +  L+FK G
Subjt:  MLEGKAVVCETDMPERIQGHVLELAYKALDQHEVSDCQSIARFIKQRFDEAYGPSWHCVAGKGFGGCITHLCGSFIFFHVDAMEFLIFKDG

Q24117 Dynein light chain 1, cytoplasmic2.9e-1437.36Show/hide
Query:  MLEGKAVVCETDMPERIQGHVLELAYKALDQHEVSDCQSIARFIKQRFDEAYGPSWHCVAGKGFGGCITHLCGSFIFFHVDAMEFLIFKDG
        M + KAV+   DM E +Q   ++ A +AL+++ +   + IA +IK+ FD+ Y P+WHC+ G+ FG  +TH    FI+F++  +  L+FK G
Subjt:  MLEGKAVVCETDMPERIQGHVLELAYKALDQHEVSDCQSIARFIKQRFDEAYGPSWHCVAGKGFGGCITHLCGSFIFFHVDAMEFLIFKDG

Q94748 Probable dynein light chain5.9e-1541.76Show/hide
Query:  MLEGKAVVCETDMPERIQGHVLELAYKALDQHEVSDCQSIARFIKQRFDEAYGPSWHCVAGKGFGGCITHLCGSFIFFHVDAMEFLIFKDG
        M E KAV+   DM E +Q   +  A  ALD++E+   + +A +IK+ FD  Y P+WHC+ GK FG  +TH    FI+F++    FL+FK G
Subjt:  MLEGKAVVCETDMPERIQGHVLELAYKALDQHEVSDCQSIARFIKQRFDEAYGPSWHCVAGKGFGGCITHLCGSFIFFHVDAMEFLIFKDG

Q94758 Dynein light chain2.6e-1541.76Show/hide
Query:  MLEGKAVVCETDMPERIQGHVLELAYKALDQHEVSDCQSIARFIKQRFDEAYGPSWHCVAGKGFGGCITHLCGSFIFFHVDAMEFLIFKDG
        M E KAV+   DM E +Q   + +A  A+D+H++   + IA  IK+ FD  Y P+WHC+ G+ FG  +TH   +FI+F++D   FL+FK G
Subjt:  MLEGKAVVCETDMPERIQGHVLELAYKALDQHEVSDCQSIARFIKQRFDEAYGPSWHCVAGKGFGGCITHLCGSFIFFHVDAMEFLIFKDG

Arabidopsis top hitse value%identityAlignment
AT1G52240.1 RHO guanyl-nucleotide exchange factor 112.1e-1253.33Show/hide
Query:  MLEGKAVVCETDMPERIQGHVLELAYKALDQHEVSDCQSIARFIKQRFDEAYGPSWHCVA
        MLEGKA+V ++DMP ++Q   +  A +ALD  +V DC+SIA  IK+ FDE YG  W CVA
Subjt:  MLEGKAVVCETDMPERIQGHVLELAYKALDQHEVSDCQSIARFIKQRFDEAYGPSWHCVA

AT1G52240.2 RHO guanyl-nucleotide exchange factor 117.3e-2150.56Show/hide
Query:  MLEGKAVVCETDMPERIQGHVLELAYKALDQHEVSDCQSIARFIKQRFDEAYGPSWHCVAGKGFGGCITHLCGSFIFFHVDAMEFLIFK
        MLEGKA+V ++DMP ++Q   +  A +ALD  +V DC+SIA  IK+ FDE YG  W CV G  FG   TH  G+FI+F ++ ++FLIFK
Subjt:  MLEGKAVVCETDMPERIQGHVLELAYKALDQHEVSDCQSIARFIKQRFDEAYGPSWHCVAGKGFGGCITHLCGSFIFFHVDAMEFLIFK

AT3G16120.1 Dynein light chain type 1 family protein2.8e-2051.69Show/hide
Query:  MLEGKAVVCETDMPERIQGHVLELAYKALDQHEVSDCQSIARFIKQRFDEAYGPSWHCVAGKGFGGCITHLCGSFIFFHVDAMEFLIFK
        MLEGKA V ETDMP ++Q   +++A ++LD  +V D  SIA  IK+ FDE YG  W CV G  FG   TH  G+FI+FH+  + FLIFK
Subjt:  MLEGKAVVCETDMPERIQGHVLELAYKALDQHEVSDCQSIARFIKQRFDEAYGPSWHCVAGKGFGGCITHLCGSFIFFHVDAMEFLIFK

AT4G27360.1 Dynein light chain type 1 family protein4.0e-1948.31Show/hide
Query:  MLEGKAVVCETDMPERIQGHVLELAYKALDQHEVSDCQSIARFIKQRFDEAYGPSWHCVAGKGFGGCITHLCGSFIFFHVDAMEFLIFK
        MLEGKAV+ +TDM + ++   L LA KALD  +V++   IARFIK+ FD +YG  W C+ G  FG  +TH  G FI F V ++  L+FK
Subjt:  MLEGKAVVCETDMPERIQGHVLELAYKALDQHEVSDCQSIARFIKQRFDEAYGPSWHCVAGKGFGGCITHLCGSFIFFHVDAMEFLIFK

AT5G20110.1 Dynein light chain type 1 family protein3.9e-1439.02Show/hide
Query:  VCETDMPERIQGHVLELAYKALDQHEVSDCQSIARFIKQRFDEAYGPSWHCVAGKGFGGCITHLCGSFIFFHVDAMEFLIFK
        +   DMP  +Q H    A   LD  E    + +A  +K+ FD+ YGP+WHC+ G  FG  +TH  G FI+F +D +  L+FK
Subjt:  VCETDMPERIQGHVLELAYKALDQHEVSDCQSIARFIKQRFDEAYGPSWHCVAGKGFGGCITHLCGSFIFFHVDAMEFLIFK


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGTTGGAGGGCAAAGCTGTGGTCTGCGAAACAGACATGCCAGAAAGGATTCAGGGCCATGTCCTTGAATTGGCTTATAAAGCACTTGATCAACACGAAGTTTCCGACTG
TCAATCCATTGCACGTTTCATCAAACAGAGGTTTGACGAAGCTTATGGCCCATCATGGCACTGTGTGGCGGGAAAAGGCTTTGGAGGTTGCATTACGCATTTATGTGGGA
GTTTCATCTTCTTCCATGTGGACGCCATGGAGTTTCTCATCTTTAAGGACGGAAGAGACGACTGCTCCAAAATCATTGAAGAGACCGTTGGAGTTCGCCAGAAAACTTAA
mRNA sequenceShow/hide mRNA sequence
ATGTTGGAGGGCAAAGCTGTGGTCTGCGAAACAGACATGCCAGAAAGGATTCAGGGCCATGTCCTTGAATTGGCTTATAAAGCACTTGATCAACACGAAGTTTCCGACTG
TCAATCCATTGCACGTTTCATCAAACAGAGGTTTGACGAAGCTTATGGCCCATCATGGCACTGTGTGGCGGGAAAAGGCTTTGGAGGTTGCATTACGCATTTATGTGGGA
GTTTCATCTTCTTCCATGTGGACGCCATGGAGTTTCTCATCTTTAAGGACGGAAGAGACGACTGCTCCAAAATCATTGAAGAGACCGTTGGAGTTCGCCAGAAAACTTAA
Protein sequenceShow/hide protein sequence
MLEGKAVVCETDMPERIQGHVLELAYKALDQHEVSDCQSIARFIKQRFDEAYGPSWHCVAGKGFGGCITHLCGSFIFFHVDAMEFLIFKDGRDDCSKIIEETVGVRQKT