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Sed0011563 (gene) of Chayote v1 genome

Gene IDSed0011563
OrganismSechium edule (Chayote v1)
DescriptionArabinogalactan peptide 23
Genome locationLG12:8798647..8799017
RNA-Seq ExpressionSed0011563
SyntenySed0011563
Gene Ontology termsGO:0016021 - integral component of membrane (cellular component)
InterPro domainsIPR044702 - Arabinogalactan protein 23/40


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAA0043704.1 Arabinogalactan peptide 23 [Cucumis melo var. makuwa]9.2e-1078.69Show/hide
Query:  MNMKKITCAVLVAAAAVSSAMASSEGPAPAPGPSSGAAAAALPAVGAFIGASVASFFAYCL
        M+MKK+TCAVLVAAAAVS+ MA+SEGPAPAP  SS  A AALPAVGAFIGAS+ SFFAY L
Subjt:  MNMKKITCAVLVAAAAVSSAMASSEGPAPAPGPSSGAAAAALPAVGAFIGASVASFFAYCL

KAG6596222.1 putative pentatricopeptide repeat-containing protein, mitochondrial, partial [Cucurbita argyrosperma subsp. sororia]5.0e-0870.49Show/hide
Query:  MNMKKITCAVLVAAAAVSSAMASSEGPAPAPGPSSGAAAAALPAVGAFIGASVASFFAYCL
        M + K+TCA+L AAA V++ +AS+E PA APGPSS AAAAA+PAVGAFIGASVAS FAY L
Subjt:  MNMKKITCAVLVAAAAVSSAMASSEGPAPAPGPSSGAAAAALPAVGAFIGASVASFFAYCL

KAG7027762.1 hypothetical protein SDJN02_08939, partial [Cucurbita argyrosperma subsp. argyrosperma]3.5e-0973.77Show/hide
Query:  MNMKKITCAVLVAAAAVSSAMASSEGPAPAPGPSSGAAAAALPAVGAFIGASVASFFAYCL
        M MKK+TCA+L AAA VS+ +AS+E PA APGPSS AAAAA+PAVGAFIGASVA+ FAY L
Subjt:  MNMKKITCAVLVAAAAVSSAMASSEGPAPAPGPSSGAAAAALPAVGAFIGASVASFFAYCL

KCW90250.1 hypothetical protein EUGRSUZ_A02403, partial [Eucalyptus grandis]3.9e-0868.85Show/hide
Query:  MNMKKITCAVLVAAAAVSSAMASSEGPAPAPGPSSGAAAAALPAVGAFIGASVASFFAYCL
        M+MKKI+CAVLVAAA++S+ +AS + PAPAPGPSSG A+AALP  G+ +GASV SFFAY L
Subjt:  MNMKKITCAVLVAAAAVSSAMASSEGPAPAPGPSSGAAAAALPAVGAFIGASVASFFAYCL

XP_038906349.1 arabinogalactan protein 23 [Benincasa hispida]7.5e-1280.33Show/hide
Query:  MNMKKITCAVLVAAAAVSSAMASSEGPAPAPGPSSGAAAAALPAVGAFIGASVASFFAYCL
        M+MKK+TCAVLV+AA +S+ MAS EGPAPAPG SS AAAAALPAVGAFIGAS+ASFFAY L
Subjt:  MNMKKITCAVLVAAAAVSSAMASSEGPAPAPGPSSGAAAAALPAVGAFIGASVASFFAYCL

TrEMBL top hitse value%identityAlignment
A0A059DIY4 Uncharacterized protein (Fragment)1.9e-0868.85Show/hide
Query:  MNMKKITCAVLVAAAAVSSAMASSEGPAPAPGPSSGAAAAALPAVGAFIGASVASFFAYCL
        M+MKKI+CAVLVAAA++S+ +AS + PAPAPGPSSG A+AALP  G+ +GASV SFFAY L
Subjt:  MNMKKITCAVLVAAAAVSSAMASSEGPAPAPGPSSGAAAAALPAVGAFIGASVASFFAYCL

A0A5D3DQ83 Arabinogalactan peptide 234.5e-1078.69Show/hide
Query:  MNMKKITCAVLVAAAAVSSAMASSEGPAPAPGPSSGAAAAALPAVGAFIGASVASFFAYCL
        M+MKK+TCAVLVAAAAVS+ MA+SEGPAPAP  SS  A AALPAVGAFIGAS+ SFFAY L
Subjt:  MNMKKITCAVLVAAAAVSSAMASSEGPAPAPGPSSGAAAAALPAVGAFIGASVASFFAYCL

A0A6P5Z0H7 arabinogalactan peptide 23-like9.3e-0862.3Show/hide
Query:  MNMKKITCAVLVAAAAVSSAMASSEGPAPAPGPSSGAAAAALPAVGAFIGASVASFFAYCL
        M+MKKI+CAV+VAAA++S+ MAS++ PA APGP+S AA+A LP +G+ +GAS+ SFFAY L
Subjt:  MNMKKITCAVLVAAAAVSSAMASSEGPAPAPGPSSGAAAAALPAVGAFIGASVASFFAYCL

I1L9W6 Uncharacterized protein7.1e-0870.69Show/hide
Query:  MNMKKITCAVLVAAAAVSSAMASSEGPAPAPGPSSGAAAAALPAVGAFIGASVASFFA
        M+MKK+TCAVL+AAA++S+A+A++E PAPAPGPSSGA+AAA  AVG+ +GASV SFFA
Subjt:  MNMKKITCAVLVAAAAVSSAMASSEGPAPAPGPSSGAAAAALPAVGAFIGASVASFFA

K7KXD9 Uncharacterized protein1.2e-0767.24Show/hide
Query:  MNMKKITCAVLVAAAAVSSAMASSEGPAPAPGPSSGAAAAALPAVGAFIGASVASFFA
        M+MKK+TCAVL+AAA+VS+ +A++E PAPAPGPSSG A+A+LP +G+ +GASV SFFA
Subjt:  MNMKKITCAVLVAAAAVSSAMASSEGPAPAPGPSSGAAAAALPAVGAFIGASVASFFA

SwissProt top hitse value%identityAlignment
Q8S2W4 Arabinogalactan protein 234.4e-0759.02Show/hide
Query:  MNMKKITCAVLVAAAAVSSAMASSEGPAPAPGPSSGAAAAALPAVGAFIGASVASFFAYCL
        M MKKI C VL AAA++++ MA+ E  APAPGP+S AA+AALPA+G+ +GAS+ S F+Y L
Subjt:  MNMKKITCAVLVAAAAVSSAMASSEGPAPAPGPSSGAAAAALPAVGAFIGASVASFFAYCL

Arabidopsis top hitse value%identityAlignment
AT2G41905.1 BEST Arabidopsis thaliana protein match is: arabinogalactan protein 23 (TAIR:AT3G57690.1)5.9e-0752.46Show/hide
Query:  MNMKKITCAVLVAAAAVSSAMASSEGPAPAPGPSSGAAAAALPAVGAFIGASVASFFAYCL
        M MKKI C V+ AAA++++ MA+  G APAPGP++  A+ A+PA+G+ +GAS+ S FAY L
Subjt:  MNMKKITCAVLVAAAAVSSAMASSEGPAPAPGPSSGAAAAALPAVGAFIGASVASFFAYCL

AT3G57690.1 arabinogalactan protein 233.2e-0859.02Show/hide
Query:  MNMKKITCAVLVAAAAVSSAMASSEGPAPAPGPSSGAAAAALPAVGAFIGASVASFFAYCL
        M MKKI C VL AAA++++ MA+ E  APAPGP+S AA+AALPA+G+ +GAS+ S F+Y L
Subjt:  MNMKKITCAVLVAAAAVSSAMASSEGPAPAPGPSSGAAAAALPAVGAFIGASVASFFAYCL


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGAACATGAACATGAAGAAGATTACTTGCGCCGTTCTCGTCGCCGCTGCTGCCGTTAGCTCCGCTATGGCCTCAAGTGAAGGCCCGGCTCCCGCACCGGGCCCGTCCTC
TGGTGCAGCTGCCGCTGCTTTGCCCGCGGTGGGCGCCTTCATTGGTGCTTCTGTTGCATCTTTCTTTGCCTACTGCTTGTAA
mRNA sequenceShow/hide mRNA sequence
GCTCATTTCGCCAAATAAAAGAAGACTCTCTAAGCGGGTCTTTCTTTCTCTACGAATTAACCTTTCCTTCATCACCATGAACATGAACATGAAGAAGATTACTTGCGCCG
TTCTCGTCGCCGCTGCTGCCGTTAGCTCCGCTATGGCCTCAAGTGAAGGCCCGGCTCCCGCACCGGGCCCGTCCTCTGGTGCAGCTGCCGCTGCTTTGCCCGCGGTGGGC
GCCTTCATTGGTGCTTCTGTTGCATCTTTCTTTGCCTACTGCTTGTAAGAAATTGTTGAAAGAGTTTGGGTTTAGGGTCCAGTTTGGAGGAAAAATATTGTTTGTTTTGG
TTGATTATTCATTGAGAAAGTTTTCTTAAGTCATATATTTA
Protein sequenceShow/hide protein sequence
MNMNMKKITCAVLVAAAAVSSAMASSEGPAPAPGPSSGAAAAALPAVGAFIGASVASFFAYCL