CuGenDBv2

Gene ID	Sed0011581
Organism	Sechium edule (Chayote v1)
Description	Ribosomal protein S21 family protein
Genome location	LG04:38153317..38156376
RNA-Seq Expression	Sed0011581
Synteny	Sed0011581
Gene Ontology terms	GO:0006412 - translation (biological process) GO:0005840 - ribosome (cellular component) GO:0003735 - structural constituent of ribosome (molecular function)
InterPro domains	IPR001911 - Ribosomal protein S21

Homology

Show/hide homology

GenBank top hits

e value

%identity

Alignment

KAG6573697.1 hypothetical protein SDJN03_27584, partial [Cucurbita argyrosperma subsp. sororia]

1.4e-37

85.98

Show/hide

Query:  MNSLARNISCSIKSSIQTTGSHLHSQHQQWRGIRVKVLGGGLERALTFLQRKMQSSGIERLIKREQTHHIKNSEKRILARKNLERKIRSQNLARKLKAIL
        MNSLARNISCSI+SSI  T S LH   QQWRGIRVKVL G LERA+TFLQRKM+SSGIERLIKREQTHHIKNSEKR+LARKNLERKIRSQ+LARKLKAIL
Subjt:  MNSLARNISCSIKSSIQTTGSHLHSQHQQWRGIRVKVLGGGLERALTFLQRKMQSSGIERLIKREQTHHIKNSEKRILARKNLERKIRSQNLARKLKAIL

Query:  MKKVRGL
        +KKVRGL
Subjt:  MKKVRGL

KAG6581566.1 Cycloartenol-C-24-methyltransferase, partial [Cucurbita argyrosperma subsp. sororia]

1.0e-37

84.26

Show/hide

Query:  MNSLARNISCSIKSSIQTTG-SHLHSQHQQWRGIRVKVLGGGLERALTFLQRKMQSSGIERLIKREQTHHIKNSEKRILARKNLERKIRSQNLARKLKAI
        MNSL+RN+SCSI+SS+ T    HLH Q QQWRGIRVKVL G LERALTFLQRKM+SSGIERLIKREQTHHIKNSEKR+LARKNLERKIRSQ+LARKLKAI
Subjt:  MNSLARNISCSIKSSIQTTG-SHLHSQHQQWRGIRVKVLGGGLERALTFLQRKMQSSGIERLIKREQTHHIKNSEKRILARKNLERKIRSQNLARKLKAI

Query:  LMKKVRGL
        L+KKVRGL
Subjt:  LMKKVRGL

XP_022934889.1 uncharacterized protein LOC111441929 [Cucurbita moschata]

1.0e-37

84.26

Show/hide

Query:  MNSLARNISCSIKSSIQTTG-SHLHSQHQQWRGIRVKVLGGGLERALTFLQRKMQSSGIERLIKREQTHHIKNSEKRILARKNLERKIRSQNLARKLKAI
        MNSL+RN+SCSI+SS+ T    HLH Q QQWRGIRVKVL G LERALTFLQRKM+SSGIERLIKREQTHHIKNSEKR+LARKNLERKIRSQ+LARKLKAI
Subjt:  MNSLARNISCSIKSSIQTTG-SHLHSQHQQWRGIRVKVLGGGLERALTFLQRKMQSSGIERLIKREQTHHIKNSEKRILARKNLERKIRSQNLARKLKAI

Query:  LMKKVRGL
        L+KKVRGL
Subjt:  LMKKVRGL

XP_022966846.1 uncharacterized protein LOC111466431 [Cucurbita maxima]

4.7e-38

86.92

Show/hide

Query:  MNSLARNISCSIKSSIQTTGSHLHSQHQQWRGIRVKVLGGGLERALTFLQRKMQSSGIERLIKREQTHHIKNSEKRILARKNLERKIRSQNLARKLKAIL
        MNSLARNISCSI+SSI  T S LH   QQWRGIRVKVL G LERA+TFLQRKMQSSGIERLIKREQTHHIKNSEKR+LARKNLERKIRSQ+LARKLKAIL
Subjt:  MNSLARNISCSIKSSIQTTGSHLHSQHQQWRGIRVKVLGGGLERALTFLQRKMQSSGIERLIKREQTHHIKNSEKRILARKNLERKIRSQNLARKLKAIL

Query:  MKKVRGL
        +KKVRGL
Subjt:  MKKVRGL

XP_022982723.1 uncharacterized protein LOC111481507 [Cucurbita maxima]

4.7e-38

85.19

Show/hide

Query:  MNSLARNISCSIKSSIQTTG-SHLHSQHQQWRGIRVKVLGGGLERALTFLQRKMQSSGIERLIKREQTHHIKNSEKRILARKNLERKIRSQNLARKLKAI
        MNSL+RN+SCSI+SS+ T    HLH Q QQWRGIRVKVL G LERALTFLQRKMQSSGIERLIKREQTHHIKNSEKR+LARKNLERKIRSQ+LARKLKAI
Subjt:  MNSLARNISCSIKSSIQTTG-SHLHSQHQQWRGIRVKVLGGGLERALTFLQRKMQSSGIERLIKREQTHHIKNSEKRILARKNLERKIRSQNLARKLKAI

Query:  LMKKVRGL
        L+KKVRGL
Subjt:  LMKKVRGL

TrEMBL top hits

e value

%identity

Alignment

A0A6J1DEG8 uncharacterized protein LOC111019699

2.5e-37

82.14

Show/hide

Query:  MNSLARNISCSIKSSIQTTGS-----HLHSQHQQWRGIRVKVLGGGLERALTFLQRKMQSSGIERLIKREQTHHIKNSEKRILARKNLERKIRSQNLARK
        MNSLARN+SC I+ SI TT S     +LH Q QQWRGIRVKVL G LERAL FLQRKMQSSGIERLIKREQTHHIKNSEKR+LARKNLERKIRSQ+LARK
Subjt:  MNSLARNISCSIKSSIQTTGS-----HLHSQHQQWRGIRVKVLGGGLERALTFLQRKMQSSGIERLIKREQTHHIKNSEKRILARKNLERKIRSQNLARK

Query:  LKAILMKKVRGL
        LKAIL+KKVRGL
Subjt:  LKAILMKKVRGL

A0A6J1F3V2 uncharacterized protein LOC111441929

5.0e-38

84.26

Show/hide

Query:  MNSLARNISCSIKSSIQTTG-SHLHSQHQQWRGIRVKVLGGGLERALTFLQRKMQSSGIERLIKREQTHHIKNSEKRILARKNLERKIRSQNLARKLKAI
        MNSL+RN+SCSI+SS+ T    HLH Q QQWRGIRVKVL G LERALTFLQRKM+SSGIERLIKREQTHHIKNSEKR+LARKNLERKIRSQ+LARKLKAI
Subjt:  MNSLARNISCSIKSSIQTTG-SHLHSQHQQWRGIRVKVLGGGLERALTFLQRKMQSSGIERLIKREQTHHIKNSEKRILARKNLERKIRSQNLARKLKAI

Query:  LMKKVRGL
        L+KKVRGL
Subjt:  LMKKVRGL

A0A6J1G018 uncharacterized protein LOC111449463

6.6e-38

85.98

Show/hide

Query:  MNSLARNISCSIKSSIQTTGSHLHSQHQQWRGIRVKVLGGGLERALTFLQRKMQSSGIERLIKREQTHHIKNSEKRILARKNLERKIRSQNLARKLKAIL
        MNSLARNISCSI+SSI  T S LH   QQWRGIRVKVL G LERA+TFLQRKM+SSGIERLIKREQTHHIKNSEKR+LARKNLERKIRSQ+LARKLKAIL
Subjt:  MNSLARNISCSIKSSIQTTGSHLHSQHQQWRGIRVKVLGGGLERALTFLQRKMQSSGIERLIKREQTHHIKNSEKRILARKNLERKIRSQNLARKLKAIL

Query:  MKKVRGL
        +KKVRGL
Subjt:  MKKVRGL

A0A6J1HQF3 uncharacterized protein LOC111466431

2.3e-38

86.92

Show/hide

Query:  MNSLARNISCSIKSSIQTTGSHLHSQHQQWRGIRVKVLGGGLERALTFLQRKMQSSGIERLIKREQTHHIKNSEKRILARKNLERKIRSQNLARKLKAIL
        MNSLARNISCSI+SSI  T S LH   QQWRGIRVKVL G LERA+TFLQRKMQSSGIERLIKREQTHHIKNSEKR+LARKNLERKIRSQ+LARKLKAIL
Subjt:  MNSLARNISCSIKSSIQTTGSHLHSQHQQWRGIRVKVLGGGLERALTFLQRKMQSSGIERLIKREQTHHIKNSEKRILARKNLERKIRSQNLARKLKAIL

Query:  MKKVRGL
        +KKVRGL
Subjt:  MKKVRGL

A0A6J1J5L6 uncharacterized protein LOC111481507

2.3e-38

85.19

Show/hide

Query:  MNSLARNISCSIKSSIQTTG-SHLHSQHQQWRGIRVKVLGGGLERALTFLQRKMQSSGIERLIKREQTHHIKNSEKRILARKNLERKIRSQNLARKLKAI
        MNSL+RN+SCSI+SS+ T    HLH Q QQWRGIRVKVL G LERALTFLQRKMQSSGIERLIKREQTHHIKNSEKR+LARKNLERKIRSQ+LARKLKAI
Subjt:  MNSLARNISCSIKSSIQTTG-SHLHSQHQQWRGIRVKVLGGGLERALTFLQRKMQSSGIERLIKREQTHHIKNSEKRILARKNLERKIRSQNLARKLKAI

Query:  LMKKVRGL
        L+KKVRGL
Subjt:  LMKKVRGL

SwissProt top hits	e value	%identity	Alignment
No hits found

Arabidopsis top hits

e value

%identity

Alignment

AT3G26360.1 Ribosomal protein S21 family protein

8.2e-25

59.81

Show/hide

Query:  MNSLARNISCSIKSSIQTTGSHLHSQHQQWRGIRVKVLGGGLERALTFLQRKMQSSGIERLIKREQTHHIKNSEKRILARKNLERKIRSQNLARKLKAIL
        MN++A+ ++  +      T   L+ Q QQ RGIRVKV    L++ALT LQ+KMQSSG+ERLIK  QTHHIKNSEK++LARKNLER+I+S + ARKL++IL
Subjt:  MNSLARNISCSIKSSIQTTGSHLHSQHQQWRGIRVKVLGGGLERALTFLQRKMQSSGIERLIKREQTHHIKNSEKRILARKNLERKIRSQNLARKLKAIL

Query:  MKKVRGL
        +KKVRGL
Subjt:  MKKVRGL

Sequences

Show/hide sequences

CDS sequence

Show/hide CDS sequence

ATGAACTCCTTGGCGCGGAACATATCTTGCTCCATCAAGTCTTCGATTCAGACCACTGGCTCGCACCTTCACTCTCAGCACCAACAATGGCGAGGGATCCGAGTGAAGGT
ACTGGGCGGAGGTCTTGAGCGGGCACTGACGTTTTTGCAAAGGAAGATGCAGTCCAGTGGAATCGAGCGCCTCATCAAGCGCGAACAGACTCATCATATCAAGAATTCCG
AGAAACGAATCTTGGCTCGTAAGAATTTGGAGCGCAAAATCCGATCGCAAAATCTGGCTCGCAAGCTCAAAGCAATCCTCATGAAGAAAGTCAGGGGTTTGTAA

mRNA sequence

Show/hide mRNA sequence

GGTAAGTATTGCTTTTTTGCCAATCTTTAAGAAGAAGAAGAAAAAAACTTGTAACCCTAAATCTATTATTCTCCATCTGGTTCACTCTCTTACGGCCAGCTACGGTAACC
GGCCGTCCAATTGGGTCCGTCAAATAGGTTCAATCCATCGGAGATTGGCCATTCGACACACCGAGAGGCTAAACCCTAGAAATGAACTCCTTGGCGCGGAACATATCTTG
CTCCATCAAGTCTTCGATTCAGACCACTGGCTCGCACCTTCACTCTCAGCACCAACAATGGCGAGGGATCCGAGTGAAGGTACTGGGCGGAGGTCTTGAGCGGGCACTGA
CGTTTTTGCAAAGGAAGATGCAGTCCAGTGGAATCGAGCGCCTCATCAAGCGCGAACAGACTCATCATATCAAGAATTCCGAGAAACGAATCTTGGCTCGTAAGAATTTG
GAGCGCAAAATCCGATCGCAAAATCTGGCTCGCAAGCTCAAAGCAATCCTCATGAAGAAAGTCAGGGGTTTGTAAGAGGAGGAGACTGCACTAGAGTTTCACAGGCATCT
TGCTCATTGTAAGCCCTTTTTTGTATCTCTTCTTTTACTGTAGCTTCCTAGACAACTTTCTTCATTCAGCAGGAAGTCTGAGCAAAATTCTGTTTTCTCGAATTGCTTTT
CTATTTTTAACATGGGTTACTATTTTAGGCCATTTACTTTGGATTTCATTCCATTTTAGCAAGTATCCAACTTGAAAGATAGCTTGATTTATGCACTCTCAATAAAACTT
AAAATTGGTCTAATGTCTAATGTTAGTTTATTGCAAACTTTTCTTAAAAACAGATCTTAGCCTTTCCTTTATGAATTTTAGTAATATGTTCATGTTG

Protein sequence

Show/hide protein sequence

MNSLARNISCSIKSSIQTTGSHLHSQHQQWRGIRVKVLGGGLERALTFLQRKMQSSGIERLIKREQTHHIKNSEKRILARKNLERKIRSQNLARKLKAILMKKVRGL

Sed0011581 (gene) of Chayote v1 genome