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Sed0011597 (gene) of Chayote v1 genome

Gene IDSed0011597
OrganismSechium edule (Chayote v1)
DescriptionE3 ubiquitin-protein ligase RNF181-like
Genome locationLG14:2052390..2052830
RNA-Seq ExpressionSed0011597
SyntenySed0011597
Gene Ontology termsGO:0006511 - ubiquitin-dependent protein catabolic process (biological process)
GO:0061630 - ubiquitin protein ligase activity (molecular function)
InterPro domainsIPR001841 - Zinc finger, RING-type
IPR013083 - Zinc finger, RING/FYVE/PHD-type


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAG6571005.1 E3 ubiquitin-protein ligase RING1-like protein, partial [Cucurbita argyrosperma subsp. sororia]9.9e-1551.28Show/hide
Query:  LVQENPTPAGAERFQMEKLEEKEEQRDLKNCSICLEEVDCKKCECVRIVCGHVYHKSCILNWLNSSNSCPMCRTPVPL
        +V+E     G  R +  + EE+EE+ DL NCSICL+E+ C+  E +R  CGHVYH+SCI  WL++S+SCP+CRT  PL
Subjt:  LVQENPTPAGAERFQMEKLEEKEEQRDLKNCSICLEEVDCKKCECVRIVCGHVYHKSCILNWLNSSNSCPMCRTPVPL

XP_022944063.1 RING-H2 finger protein ATL16-like [Cucurbita moschata]7.6e-1559.7Show/hide
Query:  RFQMEKLE-EKEEQRDLKNCSICLEEVDCKKCECVRIVCGHVYHKSCILNWLNSSNSCPMCRTPVPL
        R++MEK+E E+EE+ DL NCSICL+E+ C+  E +R  CGHVYH+SCI  WL++S+SCP+CRT  PL
Subjt:  RFQMEKLE-EKEEQRDLKNCSICLEEVDCKKCECVRIVCGHVYHKSCILNWLNSSNSCPMCRTPVPL

XP_022985641.1 RING-H2 finger protein ATL16-like [Cucurbita maxima]2.6e-1561.19Show/hide
Query:  RFQMEKLEEKEEQR-DLKNCSICLEEVDCKKCECVRIVCGHVYHKSCILNWLNSSNSCPMCRTPVPL
        R++MEK+EEKEE+  DL NCSICL+E+ C+  E +R  CGHVYH+SCI  WL++S+SCP+CRT  PL
Subjt:  RFQMEKLEEKEEQR-DLKNCSICLEEVDCKKCECVRIVCGHVYHKSCILNWLNSSNSCPMCRTPVPL

XP_023512244.1 RING-H2 finger protein ATL16-like [Cucurbita pepo subsp. pepo]1.5e-1559.09Show/hide
Query:  RFQMEKLEEKEEQRDLKNCSICLEEVDCKKCECVRIVCGHVYHKSCILNWLNSSNSCPMCRTPVPL
        R++MEK+E +EE+ DL NCSICL+E+ C+  E +R  CGHVYH+SCI  WL++S+SCP+CRT  PL
Subjt:  RFQMEKLEEKEEQRDLKNCSICLEEVDCKKCECVRIVCGHVYHKSCILNWLNSSNSCPMCRTPVPL

XP_038883574.1 E3 ubiquitin-protein ligase RNF181-like [Benincasa hispida]9.9e-1550.68Show/hide
Query:  PTPAGAERFQMEKLEEKEEQRDLKNCSICLEEVDCKKCECVRIVCGHVYHKSCILNWLNSSNSCPMCRTPVPL
        P   G E+  +E++ E + Q +L +C ICLEE+ C+K E +RI CGHVYH+SC+  WL  +NSCP+CR P+PL
Subjt:  PTPAGAERFQMEKLEEKEEQRDLKNCSICLEEVDCKKCECVRIVCGHVYHKSCILNWLNSSNSCPMCRTPVPL

TrEMBL top hitse value%identityAlignment
A0A0A0KYC0 RING-type domain-containing protein3.7e-1549.35Show/hide
Query:  VQENPTPAGAERFQMEKLEEKEEQRDLKNCSICLEEVDCKKCECVRIVCGHVYHKSCILNWLNSSNSCPMCRTPVPL
        ++E P   G     +E+L + + + +  +CS+CL+E+DC+K E +RI CGHVYH+SCI  WLNSSNSCP+CR+  PL
Subjt:  VQENPTPAGAERFQMEKLEEKEEQRDLKNCSICLEEVDCKKCECVRIVCGHVYHKSCILNWLNSSNSCPMCRTPVPL

A0A1S4DUZ4 E3 ubiquitin-protein ligase RNF181-like8.2e-1554.29Show/hide
Query:  GAERFQMEKLEEKEEQRDLKNCSICLEEVDCKKCECVRIVCGHVYHKSCILNWLNSSNSCPMCRTPVPLK
        G  + + E+L+ +E+  DL +CSICL+E+ C+K E +RI CGHVYH+SCI  WL + NSCP+CR P+PLK
Subjt:  GAERFQMEKLEEKEEQRDLKNCSICLEEVDCKKCECVRIVCGHVYHKSCILNWLNSSNSCPMCRTPVPLK

A0A5D3E1S5 E3 ubiquitin-protein ligase RNF181-like protein8.2e-1554.29Show/hide
Query:  GAERFQMEKLEEKEEQRDLKNCSICLEEVDCKKCECVRIVCGHVYHKSCILNWLNSSNSCPMCRTPVPLK
        G  + + E+L+ +E+  DL +CSICL+E+ C+K E +RI CGHVYH+SCI  WL + NSCP+CR P+PLK
Subjt:  GAERFQMEKLEEKEEQRDLKNCSICLEEVDCKKCECVRIVCGHVYHKSCILNWLNSSNSCPMCRTPVPLK

A0A6J1FXN0 RING-H2 finger protein ATL16-like3.7e-1559.7Show/hide
Query:  RFQMEKLE-EKEEQRDLKNCSICLEEVDCKKCECVRIVCGHVYHKSCILNWLNSSNSCPMCRTPVPL
        R++MEK+E E+EE+ DL NCSICL+E+ C+  E +R  CGHVYH+SCI  WL++S+SCP+CRT  PL
Subjt:  RFQMEKLE-EKEEQRDLKNCSICLEEVDCKKCECVRIVCGHVYHKSCILNWLNSSNSCPMCRTPVPL

A0A6J1J8T7 RING-H2 finger protein ATL16-like1.3e-1561.19Show/hide
Query:  RFQMEKLEEKEEQR-DLKNCSICLEEVDCKKCECVRIVCGHVYHKSCILNWLNSSNSCPMCRTPVPL
        R++MEK+EEKEE+  DL NCSICL+E+ C+  E +R  CGHVYH+SCI  WL++S+SCP+CRT  PL
Subjt:  RFQMEKLEEKEEQR-DLKNCSICLEEVDCKKCECVRIVCGHVYHKSCILNWLNSSNSCPMCRTPVPL

SwissProt top hitse value%identityAlignment
O22197 Probable E3 ubiquitin-protein ligase RHC1A5.1e-0629.57Show/hide
Query:  SNGTMNIVIRIGNNYQSTITPPLPARYHLEREPAGFRLVQENPTPAGA-ERFQMEKLEEKEEQRDLKNCSICLEEVDCKKCECVRIVCGHVYHKSCILNW
        + G+  I I  GN       P L   +  E+  AG       P P  A +     K+ ++  +    NC +C +E +    E  ++ C H+YH  CI+ W
Subjt:  SNGTMNIVIRIGNNYQSTITPPLPARYHLEREPAGFRLVQENPTPAGA-ERFQMEKLEEKEEQRDLKNCSICLEEVDCKKCECVRIVCGHVYHKSCILNW

Query:  LNSSNSCPMCRTPVP
        L   NSCP+CR  +P
Subjt:  LNSSNSCPMCRTPVP

P90990 E3 ubiquitin-protein ligase trul-15.1e-0643.75Show/hide
Query:  NCSICLEEVDCKKCECVRIVCGHVYHKSCILNWLNSSNSCPMCRTPVP
        +CSIC E++  +  +   IVCGH+YH  CI  W+ +   CP CR  VP
Subjt:  NCSICLEEVDCKKCECVRIVCGHVYHKSCILNWLNSSNSCPMCRTPVP

Q7ZW78 E3 ubiquitin-protein ligase RNF1811.1e-0547.92Show/hide
Query:  CSICLEEVDCKKCECVR-IVCGHVYHKSCILNWLNSSNSCPMCRTPVP
        C +CL E +  + E VR + C H++H  CIL WLN +NSCP+CR  +P
Subjt:  CSICLEEVDCKKCECVR-IVCGHVYHKSCILNWLNSSNSCPMCRTPVP

Q93ZF6 E3 ubiquitin-protein ligase AIRP11.1e-0530.43Show/hide
Query:  IGNNYQSTITPPLP---ARYHLEREPAGFRLVQENPTPA--GAERFQMEK----------LEEKEEQRD-LKNCSICLEEVDCKKCECVRIVCGHVYHKS
        + N Y S ++PP+P      +L+  P      Q N + A  G  +   EK           E K++ R+ +  C ICLEE +    + +   CGH +H +
Subjt:  IGNNYQSTITPPLP---ARYHLEREPAGFRLVQENPTPA--GAERFQMEK----------LEEKEEQRD-LKNCSICLEEVDCKKCECVRIVCGHVYHKS

Query:  CILNWLNSSNSCPMC
        CIL W+  S +CP+C
Subjt:  CILNWLNSSNSCPMC

Q94AK4 E3 ubiquitin-protein ligase RZF16.7e-0636.67Show/hide
Query:  KLEEKEEQRDLKNCSICLEEVDCKKCECVRIVCGHVYHKSCILNWLNSSNSCPMCRTPVP
        K+ +K  +    +C +C +E + K  E  ++ C H+YH  CI+ WL   NSCP+CR  +P
Subjt:  KLEEKEEQRDLKNCSICLEEVDCKKCECVRIVCGHVYHKSCILNWLNSSNSCPMCRTPVP

Arabidopsis top hitse value%identityAlignment
AT1G60360.1 RING/U-box superfamily protein5.6e-0837.7Show/hide
Query:  KLEEKEEQRDLKNCSICLEEVDCKKCECVRIVCGHVYHKSCILNWLNSSNSCPMCRTPVPL
        K+  +    D+  C++C+EE      +   + C H+YHK CI+ WL  +NSCP+CR  +PL
Subjt:  KLEEKEEQRDLKNCSICLEEVDCKKCECVRIVCGHVYHKSCILNWLNSSNSCPMCRTPVPL

AT3G28620.1 Zinc finger, C3HC4 type (RING finger) family protein1.2e-0740.3Show/hide
Query:  AERFQMEKLEEKEEQRDLKNCSICLEEVDCKKCECVRIVCGHVYHKSCILNWL-NSSNSCPMCRTPV
        A  F  E  +E+EE+   K C+ICLE +   +  C    C H +H+ C+  WL   +NSCP+CR PV
Subjt:  AERFQMEKLEEKEEQRDLKNCSICLEEVDCKKCECVRIVCGHVYHKSCILNWL-NSSNSCPMCRTPV

AT3G30460.1 RING/U-box superfamily protein7.3e-0841.43Show/hide
Query:  AGAERFQMEKLEEKEEQRDLKNCSICLEEVDCKKCECVRIVCGHVYHKSCILNWLNSSNSCPMCRTPVPL
        AG E   +E   E+  +R L  C+IC EE+   +     + C H YHK CI NWL++ N+CP+CR  V L
Subjt:  AGAERFQMEKLEEKEEQRDLKNCSICLEEVDCKKCECVRIVCGHVYHKSCILNWLNSSNSCPMCRTPVPL

AT4G05350.1 RING/U-box superfamily protein5.6e-0839.06Show/hide
Query:  QMEKLEEKEEQRDLKNCSICLEEV--DCKKCECVRIVCGHVYHKSCILNWLNSSNSCPMCRTPV
        +M+  E K  + + + CSICLE +    K  +  R+ C HV+H  C+L WL   N+CP+CRT +
Subjt:  QMEKLEEKEEQRDLKNCSICLEEV--DCKKCECVRIVCGHVYHKSCILNWLNSSNSCPMCRTPV

AT4G12140.1 RING/U-box superfamily protein5.6e-0843.33Show/hide
Query:  MEKLEEKEEQRDLKNCSICLEE-VDCKKCECVRIVCGHVYHKSCILNWLNSSNSCPMCRT
        M+  E K    +  +CSICL+  V   K    R+ C HV+H SC++ WL   N+CPMCRT
Subjt:  MEKLEEKEEQRDLKNCSICLEE-VDCKKCECVRIVCGHVYHKSCILNWLNSSNSCPMCRT


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGCCTTCTTCTACAGTTAACGACGCTGCCAACCAACCCGCTCTGCGACTCGAAGTGAACTTAGCCCGGCGCGTGGTCAACATCGAATCAAACGGAACCATGAACATTGT
CATCCGAATCGGGAACAATTACCAAAGCACCATCACACCTCCACTCCCCGCCAGGTACCACCTGGAGCGGGAGCCGGCGGGGTTCAGGTTGGTTCAGGAAAACCCTACGC
CCGCAGGAGCGGAGAGGTTTCAAATGGAGAAATTGGAAGAGAAGGAAGAACAACGAGATTTGAAAAATTGCAGTATATGTTTGGAGGAAGTAGATTGCAAGAAGTGTGAA
TGCGTAAGGATCGTCTGCGGACATGTGTATCATAAATCATGCATCCTCAACTGGCTTAATAGTTCCAATTCTTGCCCTATGTGTAGAACCCCAGTGCCCTTAAAATTATA
A
mRNA sequenceShow/hide mRNA sequence
ATGCCTTCTTCTACAGTTAACGACGCTGCCAACCAACCCGCTCTGCGACTCGAAGTGAACTTAGCCCGGCGCGTGGTCAACATCGAATCAAACGGAACCATGAACATTGT
CATCCGAATCGGGAACAATTACCAAAGCACCATCACACCTCCACTCCCCGCCAGGTACCACCTGGAGCGGGAGCCGGCGGGGTTCAGGTTGGTTCAGGAAAACCCTACGC
CCGCAGGAGCGGAGAGGTTTCAAATGGAGAAATTGGAAGAGAAGGAAGAACAACGAGATTTGAAAAATTGCAGTATATGTTTGGAGGAAGTAGATTGCAAGAAGTGTGAA
TGCGTAAGGATCGTCTGCGGACATGTGTATCATAAATCATGCATCCTCAACTGGCTTAATAGTTCCAATTCTTGCCCTATGTGTAGAACCCCAGTGCCCTTAAAATTATA
A
Protein sequenceShow/hide protein sequence
MPSSTVNDAANQPALRLEVNLARRVVNIESNGTMNIVIRIGNNYQSTITPPLPARYHLEREPAGFRLVQENPTPAGAERFQMEKLEEKEEQRDLKNCSICLEEVDCKKCE
CVRIVCGHVYHKSCILNWLNSSNSCPMCRTPVPLKL