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Sed0011626 (gene) of Chayote v1 genome

Gene IDSed0011626
OrganismSechium edule (Chayote v1)
DescriptionRetrotransposon protein, putative, Ty1-copia subclass
Genome locationLG09:40539694..40540582
RNA-Seq ExpressionSed0011626
SyntenySed0011626
Gene Ontology termsGO:0003676 - nucleic acid binding (molecular function)
InterPro domainsNA


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAA0036141.1 retrotransposon protein, putative, Ty1-copia subclass [Cucumis melo var. makuwa]4.3e-1158.93Show/hide
Query:  NPEYDVWVTTDQLLIGWLYNSMTADMASQVMGYDTAKDLWQAIEDCHGVYSHSHED
        N ++D WVT+D LL+GW+YNSMTA++A Q+MG++ AKDLW+AI+D  GV S   ED
Subjt:  NPEYDVWVTTDQLLIGWLYNSMTADMASQVMGYDTAKDLWQAIEDCHGVYSHSHED

KAA0060208.1 Integrase, catalytic core [Cucumis melo var. makuwa]2.5e-1160.71Show/hide
Query:  NPEYDVWVTTDQLLIGWLYNSMTADMASQVMGYDTAKDLWQAIEDCHGVYSHSHED
        NP++D WVT+D LL+GW+YNSMTA++A Q+MG++TAKDL +AI+D  GV S   ED
Subjt:  NPEYDVWVTTDQLLIGWLYNSMTADMASQVMGYDTAKDLWQAIEDCHGVYSHSHED

KAA0067279.1 uncharacterized protein E6C27_scaffold418G001000 [Cucumis melo var. makuwa]7.4e-1155.36Show/hide
Query:  NPEYDVWVTTDQLLIGWLYNSMTADMASQVMGYDTAKDLWQAIEDCHGVYSHSHED
        NP+Y+ W+TTD LL+GWLYNSMT ++  Q+MG+  AKDLW+A +D  G+ S + ED
Subjt:  NPEYDVWVTTDQLLIGWLYNSMTADMASQVMGYDTAKDLWQAIEDCHGVYSHSHED

XP_022148963.1 uncharacterized protein LOC111017501 [Momordica charantia]1.3e-1263.16Show/hide
Query:  NPEYDVWVTTDQLLIGWLYNSMTADMASQVMGYDTAKDLWQAIEDCHGVYSHSHEDH
        NP Y+ WVTTDQLL+GWLYNSMT ++A+QVMGY+ A DLW AI++  GV S + ED+
Subjt:  NPEYDVWVTTDQLLIGWLYNSMTADMASQVMGYDTAKDLWQAIEDCHGVYSHSHEDH

XP_031745012.1 uncharacterized protein LOC116405217 [Cucumis sativus]1.9e-1158.93Show/hide
Query:  NPEYDVWVTTDQLLIGWLYNSMTADMASQVMGYDTAKDLWQAIEDCHGVYSHSHED
        NP++D WVT D LL+GW+YNSMT ++A Q+MG++TAKDLW+AI+D  GV   + ED
Subjt:  NPEYDVWVTTDQLLIGWLYNSMTADMASQVMGYDTAKDLWQAIEDCHGVYSHSHED

TrEMBL top hitse value%identityAlignment
A0A1S4DY80 uncharacterized protein LOC1079911163.6e-1155.36Show/hide
Query:  NPEYDVWVTTDQLLIGWLYNSMTADMASQVMGYDTAKDLWQAIEDCHGVYSHSHED
        NP+Y+ W+TTD LL+GWLYNSMT ++  Q+MG+  AKDLW+A +D  G+ S + ED
Subjt:  NPEYDVWVTTDQLLIGWLYNSMTADMASQVMGYDTAKDLWQAIEDCHGVYSHSHED

A0A5A7UY76 Integrase, catalytic core1.2e-1160.71Show/hide
Query:  NPEYDVWVTTDQLLIGWLYNSMTADMASQVMGYDTAKDLWQAIEDCHGVYSHSHED
        NP++D WVT+D LL+GW+YNSMTA++A Q+MG++TAKDL +AI+D  GV S   ED
Subjt:  NPEYDVWVTTDQLLIGWLYNSMTADMASQVMGYDTAKDLWQAIEDCHGVYSHSHED

A0A5A7VPY0 Uncharacterized protein3.6e-1155.36Show/hide
Query:  NPEYDVWVTTDQLLIGWLYNSMTADMASQVMGYDTAKDLWQAIEDCHGVYSHSHED
        NP+Y+ W+TTD LL+GWLYNSMT ++  Q+MG+  AKDLW+A +D  G+ S + ED
Subjt:  NPEYDVWVTTDQLLIGWLYNSMTADMASQVMGYDTAKDLWQAIEDCHGVYSHSHED

A0A5D3CPY2 Retrotransposon protein, putative, Ty1-copia subclass2.1e-1158.93Show/hide
Query:  NPEYDVWVTTDQLLIGWLYNSMTADMASQVMGYDTAKDLWQAIEDCHGVYSHSHED
        N ++D WVT+D LL+GW+YNSMTA++A Q+MG++ AKDLW+AI+D  GV S   ED
Subjt:  NPEYDVWVTTDQLLIGWLYNSMTADMASQVMGYDTAKDLWQAIEDCHGVYSHSHED

A0A6J1D5J0 uncharacterized protein LOC1110175016.5e-1363.16Show/hide
Query:  NPEYDVWVTTDQLLIGWLYNSMTADMASQVMGYDTAKDLWQAIEDCHGVYSHSHEDH
        NP Y+ WVTTDQLL+GWLYNSMT ++A+QVMGY+ A DLW AI++  GV S + ED+
Subjt:  NPEYDVWVTTDQLLIGWLYNSMTADMASQVMGYDTAKDLWQAIEDCHGVYSHSHEDH

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGGATCCATTTCATCATGATCCTTTAGGGATGTCTTTCTCAAATCCTGAATATGATGTTTGGGTCACTACTGATCAACTGCTTATAGGTTGGTTATATAACTCAATGAC
AGCAGACATGGCTTCACAAGTTATGGGTTATGACACTGCTAAAGATCTCTGGCAAGCAATTGAAGACTGTCATGGAGTTTACTCTCATTCTCATGAGGACCACAACCAGT
AG
mRNA sequenceShow/hide mRNA sequence
ATGGATCCATTTCATCATGATCCTTTAGGGATGTCTTTCTCAAATCCTGAATATGATGTTTGGGTCACTACTGATCAACTGCTTATAGGTTGGTTATATAACTCAATGAC
AGCAGACATGGCTTCACAAGTTATGGGTTATGACACTGCTAAAGATCTCTGGCAAGCAATTGAAGACTGTCATGGAGTTTACTCTCATTCTCATGAGGACCACAACCAGT
AG
Protein sequenceShow/hide protein sequence
MDPFHHDPLGMSFSNPEYDVWVTTDQLLIGWLYNSMTADMASQVMGYDTAKDLWQAIEDCHGVYSHSHEDHNQ