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Sed0011772 (gene) of Chayote v1 genome

Gene IDSed0011772
OrganismSechium edule (Chayote v1)
DescriptionRNase H domain-containing protein
Genome locationLG08:26713254..26714247
RNA-Seq ExpressionSed0011772
SyntenySed0011772
Gene Ontology termsGO:0003676 - nucleic acid binding (molecular function)
GO:0004523 - RNA-DNA hybrid ribonuclease activity (molecular function)
InterPro domainsIPR002156 - Ribonuclease H domain


Homology Show/hide homology
GenBank top hitse value%identityAlignment
TXG71533.1 hypothetical protein EZV62_000112 [Acer yangbiense]3.4e-1130.9Show/hide
Query:  WSLWRDRNKLIRNEGVLKVVDKADWASNYLEEFQAANLVSSLCPPITLDASVMPIWWSPPVRGSLKLNVDAAF-----------------SMATLYG---
        W +W  RNK + N  +L   +  DW  N++ +++ AN    +     ++    P W +PP  GS+K+N DAA                  ++A L G   
Subjt:  WSLWRDRNKLIRNEGVLKVVDKADWASNYLEEFQAANLVSSLCPPITLDASVMPIWWSPPVRGSLKLNVDAAF-----------------SMATLYG---

Query:  -----FANIFVESDCRALVFAVNESRLRESNVGIFLVEIGNLLDLDIFKKFIFVPRGSNFVAHNLAKWACNCGLSSDW
             F+ + +ESD   +V A+N      S VG+ L +I  +LD      F FVPR  N VAH LAK   N    S W
Subjt:  -----FANIFVESDCRALVFAVNESRLRESNVGIFLVEIGNLLDLDIFKKFIFVPRGSNFVAHNLAKWACNCGLSSDW

XP_012841298.1 PREDICTED: uncharacterized protein LOC105961612 [Erythranthe guttata]7.9e-0824.06Show/hide
Query:  WSLWRDRNKLIRNEGVLKVVDKADWASNYLEEFQAANLVSSLCPPITLDASVMPIWWSPPVRGSLKLNVDAAFSMATLY---------------------
        WS W  RN+    +  L+  D  +W+ +YL  F++A    S+            + W+PP  G +K+N DAAF  +  Y                     
Subjt:  WSLWRDRNKLIRNEGVLKVVDKADWASNYLEEFQAANLVSSLCPPITLDASVMPIWWSPPVRGSLKLNVDAAFSMATLY---------------------

Query:  -------------------------GFANIFVESDCRALVFAVNESRLRESNVGIFLVEIGNLLDLDIFKKFIFVPRGSNFVAHNLA
                                 G+ ++ +E DCR L+ A+ +      + G +L +I NL    +  +F FVPR  N +AH +A
Subjt:  -------------------------GFANIFVESDCRALVFAVNESRLRESNVGIFLVEIGNLLDLDIFKKFIFVPRGSNFVAHNLA

XP_012851712.1 PREDICTED: uncharacterized protein LOC105971405 [Erythranthe guttata]5.5e-0925.38Show/hide
Query:  WSLWRDRNKLIRNEGVLKVVDKADWASNYLEEFQAANLVSSLCPPITLDASVMPIWWSPPVRGSLKLNVDAAF---------------------------
        W  W +RN+ +++E V+K  D   W  ++L  +++A     +CP   +   + P  W PP    +KLN DAAF                           
Subjt:  WSLWRDRNKLIRNEGVLKVVDKADWASNYLEEFQAANLVSSLCPPITLDASVMPIWWSPPVRGSLKLNVDAAF---------------------------

Query:  -------------------SMATLYGFANIFVESDCRALVFAVNESRLRESNVGIFLVEIGNLLDLDIFKKFIFVPRGSNFVAHNLAKWACNCGLSS
                           SMA   G  NI +E DC  ++ A+N      S+ G F+ E  N+ +      F FV R  N +AH +A+ +C   + S
Subjt:  -------------------SMATLYGFANIFVESDCRALVFAVNESRLRESNVGIFLVEIGNLLDLDIFKKFIFVPRGSNFVAHNLAKWACNCGLSS

XP_012857846.1 PREDICTED: uncharacterized protein LOC105977118 [Erythranthe guttata]1.6e-0824.87Show/hide
Query:  WSLWRDRNKLIRNEGVLKVVDKADWASNYLEEFQAANLVSSLCPPITLDASVMPIWWSPPVRGSLKLNVDAAF---------------------------
        W  W +RN+ +++E V+K  D   W  ++L  +++A     +CP   +   + P  W PP    +KLN D AF                           
Subjt:  WSLWRDRNKLIRNEGVLKVVDKADWASNYLEEFQAANLVSSLCPPITLDASVMPIWWSPPVRGSLKLNVDAAF---------------------------

Query:  -------------------SMATLYGFANIFVESDCRALVFAVNESRLRESNVGIFLVEIGNLLDLDIFKKFIFVPRGSNFVAHNLAKWACNCGLSS
                           SMA   G  NI +E DC  ++ A+N      S+ G F+ E  N+ +      F FV R  N +AH +A+ +C   + S
Subjt:  -------------------SMATLYGFANIFVESDCRALVFAVNESRLRESNVGIFLVEIGNLLDLDIFKKFIFVPRGSNFVAHNLAKWACNCGLSS

XP_024195872.1 uncharacterized protein LOC112199038 [Rosa chinensis]4.2e-0927.5Show/hide
Query:  IWSLWRDRNKLIRNEGVLKVVDKADWASNYLEEFQAANLVSSLCPPITLDASVMPIWWSPPVRGSLKLNVDAAF---SMATLYG----------------
        +WS+W++RN  + ++ + +  D A ++  +L+E+Q+AN+ +   P      S     WS PV G LK N D AF   S    YG                
Subjt:  IWSLWRDRNKLIRNEGVLKVVDKADWASNYLEEFQAANLVSSLCPPITLDASVMPIWWSPPVRGSLKLNVDAAF---SMATLYG----------------

Query:  ---------------------------FANIFVESDCRALVFAVNESRLRESNVGIFLVEIGNLLDLDIFKKFIFVPRGSNFVAHNLAKWACNCGLSSDW
                                   + N+  ESDC  L+ A+       S +G+ L E+ +LL  ++  K  + PR +N VAH LAK AC    S  W
Subjt:  ---------------------------FANIFVESDCRALVFAVNESRLRESNVGIFLVEIGNLLDLDIFKKFIFVPRGSNFVAHNLAKWACNCGLSSDW

TrEMBL top hitse value%identityAlignment
A0A4Q3DBE2 Reverse transcriptase-like protein (Fragment)4.7e-0624.38Show/hide
Query:  IWSLWRDRNKLIRNEGVLKVVDKADWASNYLEEFQAANLVSSLCPPITLDASVMPIWWSPPVRGSLKLNVDAAFS-------------------------
        IW LW  RN ++             W  ++LEE++AA +  +   P +   +  P  W+PP  G+L +NVDAA +                         
Subjt:  IWSLWRDRNKLIRNEGVLKVVDKADWASNYLEEFQAANLVSSLCPPITLDASVMPIWWSPPVRGSLKLNVDAAFS-------------------------

Query:  ---------MATLY------------GFANIFVESDCRALVFAVNESRLRESNVGIFLVEI-GNLLDLDIFKKFIFVPRGSNFVAHNLAKWACNCGLSSD
                 +A  Y            G     ++SDC  +V  ++E     + +G  L  I   + +L++F + + + R  N  AHNLA++A N   SS 
Subjt:  ---------MATLY------------GFANIFVESDCRALVFAVNESRLRESNVGIFLVEI-GNLLDLDIFKKFIFVPRGSNFVAHNLAKWACNCGLSSD

Query:  W
        W
Subjt:  W

A0A5C7HA98 CCHC-type domain-containing protein6.1e-0634.68Show/hide
Query:  SFKLITIRKDEDKVVLVSDLVNDLGIWSLWRDRNKLIRNEGVLKVVDKADWASNYLEEFQAANLVSSLCPPITLDASVMPIWWSPPVRGSLKLNVDAAFS
        +F   T+ KDE +++ V        +W LW  RN+   +   ++  D   WAS+Y+ EF+ ANLV     P  L   V  I WS P  GS K+N DAA  
Subjt:  SFKLITIRKDEDKVVLVSDLVNDLGIWSLWRDRNKLIRNEGVLKVVDKADWASNYLEEFQAANLVSSLCPPITLDASVMPIWWSPPVRGSLKLNVDAAFS

Query:  MA-TLYGFANIFVESDCRALVFAV
        +A    G   I  +S  + +V AV
Subjt:  MA-TLYGFANIFVESDCRALVFAV

A0A5C7IQ65 RNase H domain-containing protein1.7e-1130.9Show/hide
Query:  WSLWRDRNKLIRNEGVLKVVDKADWASNYLEEFQAANLVSSLCPPITLDASVMPIWWSPPVRGSLKLNVDAAF-----------------SMATLYG---
        W +W  RNK + N  +L   +  DW  N++ +++ AN    +     ++    P W +PP  GS+K+N DAA                  ++A L G   
Subjt:  WSLWRDRNKLIRNEGVLKVVDKADWASNYLEEFQAANLVSSLCPPITLDASVMPIWWSPPVRGSLKLNVDAAF-----------------SMATLYG---

Query:  -----FANIFVESDCRALVFAVNESRLRESNVGIFLVEIGNLLDLDIFKKFIFVPRGSNFVAHNLAKWACNCGLSSDW
             F+ + +ESD   +V A+N      S VG+ L +I  +LD      F FVPR  N VAH LAK   N    S W
Subjt:  -----FANIFVESDCRALVFAVNESRLRESNVGIFLVEIGNLLDLDIFKKFIFVPRGSNFVAHNLAKWACNCGLSSDW

A0A6P6S751 uncharacterized protein LOC1136883761.6e-0623.64Show/hide
Query:  EDKVVLVSDLVNDLGIWSLWRDRNKL---IRNEGVLKVVDKA--DWASNYLEEFQAANLVSSLCPPITLDASVMPIWWSPPVRGSLKLNVDAAFS-----
        ED++ L  ++     +W +W+ RNK+     N    +++DKA  +W      EF  AN + S           + + W PP  G +K+N DAA S     
Subjt:  EDKVVLVSDLVNDLGIWSLWRDRNKL---IRNEGVLKVVDKA--DWASNYLEEFQAANLVSSLCPPITLDASVMPIWWSPPVRGSLKLNVDAAFS-----

Query:  -----------------------------------------MATLYGFANIFVESDCRALVFAVNESRLRESNVGIFLVEIGNLLDLDIFKKFIFVPRGS
                                                 MA + G+ NI V+SDC+ +V  +N   +++  +   L +I  L        F FVPR +
Subjt:  -----------------------------------------MATLYGFANIFVESDCRALVFAVNESRLRESNVGIFLVEIGNLLDLDIFKKFIFVPRGS

Query:  NFVAHNLAKWACNCGLSSDW
        N  +H +A++A     + +W
Subjt:  NFVAHNLAKWACNCGLSSDW

A0A803NXA2 Uncharacterized protein1.2e-0626.8Show/hide
Query:  IWSLWRDRNKLIRNEGVLKVVDKADWASNYLEEFQAANL------VSSLCPPITLDASVMPIWWSPPVRGSLKLNVDAA---------------------
        +W +W +RN+++  +     V  A ++SNYL  F AA L       +S  PP    ++  P  W PP+RG LKLNVDAA                     
Subjt:  IWSLWRDRNKLIRNEGVLKVVDKADWASNYLEEFQAANL------VSSLCPPITLDASVMPIWWSPPVRGSLKLNVDAA---------------------

Query:  ---FSMATLYGFAN----------------------IFVESDCRALVFAVNESRLRESNVGIFLVEIGNLLDLDIFKKFIFVPRGSNFVAHNLA
           FSM T+  F++                      I VE+D   +  A+N + +  S+    ++ I +LL          V R +N V+ +LA
Subjt:  ---FSMATLYGFAN----------------------IFVESDCRALVFAVNESRLRESNVGIFLVEIGNLLDLDIFKKFIFVPRGSNFVAHNLA

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGCTGGTTTTTAATTCCCCTTGGATCCCTCGTCCTCGTTCTTTTAAACTGATCACAATTCGAAAGGATGAAGATAAAGTTGTGCTTGTATCTGATCTTGTAAATGATCT
TGGGATTTGGTCTTTGTGGCGTGACAGAAACAAGTTGATTAGAAATGAGGGTGTGCTTAAGGTTGTTGATAAAGCGGATTGGGCCTCTAATTACCTTGAAGAGTTTCAAG
CTGCAAACTTGGTGAGTTCTCTTTGCCCCCCTATTACTCTTGATGCTTCTGTTATGCCAATTTGGTGGTCACCTCCTGTGCGAGGCTCTCTTAAATTGAATGTTGATGCA
GCTTTTTCTATGGCTACCCTCTATGGGTTTGCGAATATTTTTGTTGAATCTGATTGCAGAGCTTTGGTTTTTGCTGTGAATGAGAGCCGTTTGCGTGAGTCAAATGTAGG
CATTTTCCTTGTTGAAATTGGAAATCTGCTGGATTTAGATATTTTTAAAAAGTTTATTTTTGTTCCTAGAGGTTCCAATTTTGTTGCTCATAACTTGGCTAAATGGGCCT
GTAATTGTGGTTTATCTTCTGACTGGGGTCCAAACTCTCGAGAATCGGAGTCCAACAAAATTCATATATTTCGCTTGCGACCGAATTTTTCAACGCGGCGCTATCATTAA
mRNA sequenceShow/hide mRNA sequence
ATGCTGGTTTTTAATTCCCCTTGGATCCCTCGTCCTCGTTCTTTTAAACTGATCACAATTCGAAAGGATGAAGATAAAGTTGTGCTTGTATCTGATCTTGTAAATGATCT
TGGGATTTGGTCTTTGTGGCGTGACAGAAACAAGTTGATTAGAAATGAGGGTGTGCTTAAGGTTGTTGATAAAGCGGATTGGGCCTCTAATTACCTTGAAGAGTTTCAAG
CTGCAAACTTGGTGAGTTCTCTTTGCCCCCCTATTACTCTTGATGCTTCTGTTATGCCAATTTGGTGGTCACCTCCTGTGCGAGGCTCTCTTAAATTGAATGTTGATGCA
GCTTTTTCTATGGCTACCCTCTATGGGTTTGCGAATATTTTTGTTGAATCTGATTGCAGAGCTTTGGTTTTTGCTGTGAATGAGAGCCGTTTGCGTGAGTCAAATGTAGG
CATTTTCCTTGTTGAAATTGGAAATCTGCTGGATTTAGATATTTTTAAAAAGTTTATTTTTGTTCCTAGAGGTTCCAATTTTGTTGCTCATAACTTGGCTAAATGGGCCT
GTAATTGTGGTTTATCTTCTGACTGGGGTCCAAACTCTCGAGAATCGGAGTCCAACAAAATTCATATATTTCGCTTGCGACCGAATTTTTCAACGCGGCGCTATCATTAA
CCGC
Protein sequenceShow/hide protein sequence
MLVFNSPWIPRPRSFKLITIRKDEDKVVLVSDLVNDLGIWSLWRDRNKLIRNEGVLKVVDKADWASNYLEEFQAANLVSSLCPPITLDASVMPIWWSPPVRGSLKLNVDA
AFSMATLYGFANIFVESDCRALVFAVNESRLRESNVGIFLVEIGNLLDLDIFKKFIFVPRGSNFVAHNLAKWACNCGLSSDWGPNSRESESNKIHIFRLRPNFSTRRYH