; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; CuGenDBv2

Sed0011792 (gene) of Chayote v1 genome

Gene IDSed0011792
OrganismSechium edule (Chayote v1)
DescriptionBED-type domain-containing protein
Genome locationLG05:6521024..6522721
RNA-Seq ExpressionSed0011792
SyntenySed0011792
Gene Ontology termsNA
InterPro domainsNA


Homology Show/hide homology
GenBank top hitse value%identityAlignment
XP_015381584.1 uncharacterized protein LOC107174877 [Citrus sinensis]2.2e-0628.29Show/hide
Query:  PPEGWVAVYVDMLKRGVQFPMVSAHGKVLGMLCLALVQLTPNIWTVFLICRILWGDLGMGRGGV----------NSYQDSKVGYYLTPCHPYPRLISTPD
        PP G+V ++++  K G + P+     K+LG + LA  QL PN W+V     +LW   G     +          +S +++   Y+++       +   P 
Subjt:  PPEGWVAVYVDMLKRGVQFPMVSAHGKVLGMLCLALVQLTPNIWTVFLICRILWGDLGMGRGGV----------NSYQDSKVGYYLTPCHPYPRLISTPD

Query:  TTSGWRAKWFFVGGSWKEICP-PHS---NFDIPTKYEKSEKLKLRVRAGVED
        +   W+ K+FF GGSW   CP  HS   +  +PT +   E   L    G+ED
Subjt:  TTSGWRAKWFFVGGSWKEICP-PHS---NFDIPTKYEKSEKLKLRVRAGVED

XP_024039132.1 uncharacterized protein LOC112097784 [Citrus clementina]3.8e-0628.93Show/hide
Query:  PPEGWVAVYVDMLKRGVQFPMVSAHGKVLGMLCLALVQLTPNIWTVFLICRILWGDLGMGRGGV----------NSYQDSKVGYYLTPCHPYPRLISTPD
        PP G+V ++++  K G Q P+     K+LG + LA  QL PN W V     +LW   G     +          +S +++   Y+++       + S P 
Subjt:  PPEGWVAVYVDMLKRGVQFPMVSAHGKVLGMLCLALVQLTPNIWTVFLICRILWGDLGMGRGGV----------NSYQDSKVGYYLTPCHPYPRLISTPD

Query:  TTSGWRAKWFFVGGSWKEICP
        +   W+ K+FF GG+W   CP
Subjt:  TTSGWRAKWFFVGGSWKEICP

XP_030931833.1 uncharacterized protein LOC115957668 isoform X1 [Quercus lobata]3.8e-0630.63Show/hide
Query:  VAVYVDMLKRGVQFPMVSAHGKVLGMLCLALVQLTPNIWTVFLICRILWGDLGMG------RGGVNSYQDSKVG-----YYLTPCHPYPRLI-STPDTTS
        V VY  +LK G++FP+ + H ++L  L L++ Q++PN W VF+   IL+G +  G      R  ++ Y+  ++      Y      P  ++I  TPD+  
Subjt:  VAVYVDMLKRGVQFPMVSAHGKVLGMLCLALVQLTPNIWTVFLICRILWGDLGMG------RGGVNSYQDSKVG-----YYLTPCHPYPRLI-STPDTTS

Query:  GWRAKWFFVGG
         W++++FF+ G
Subjt:  GWRAKWFFVGG

XP_030939946.1 uncharacterized protein LOC115964850 [Quercus lobata]3.8e-0630.63Show/hide
Query:  VAVYVDMLKRGVQFPMVSAHGKVLGMLCLALVQLTPNIWTVFLICRILWGDLGMG------RGGVNSYQDSKVG-----YYLTPCHPYPRLI-STPDTTS
        V VY  +LK G++FP+ + H ++L  L L++ Q++PN W VF+   IL+G +  G      R  ++ Y+  ++      Y      P  ++I  TPD+  
Subjt:  VAVYVDMLKRGVQFPMVSAHGKVLGMLCLALVQLTPNIWTVFLICRILWGDLGMG------RGGVNSYQDSKVG-----YYLTPCHPYPRLI-STPDTTS

Query:  GWRAKWFFVGG
         W++++FF+ G
Subjt:  GWRAKWFFVGG

XP_030964407.1 uncharacterized protein LOC115985621 [Quercus lobata]4.5e-0732.43Show/hide
Query:  VAVYVDMLKRGVQFPMVSAHGKVLGMLCLALVQLTPNIWTVFLICRILWGDLGMGRGGV-----------NSYQDSKVGYYLTPCHPYPRLI-STPDTTS
        V +Y  MLK G++FP+ S H ++L  L L++ Q++PN W VF+   IL+G +  G+  +           +    SK  Y   P  P  ++I  TPD+  
Subjt:  VAVYVDMLKRGVQFPMVSAHGKVLGMLCLALVQLTPNIWTVFLICRILWGDLGMGRGGV-----------NSYQDSKVGYYLTPCHPYPRLI-STPDTTS

Query:  GWRAKWFFVGG
         W+ ++FF+ G
Subjt:  GWRAKWFFVGG

TrEMBL top hitse value%identityAlignment
A0A7N2LCU7 Uncharacterized protein2.0e-0528.69Show/hide
Query:  VAVYVDMLKRGVQFPMVSAHGKVLGMLCLALVQLTPNIWTVFLICRILWGDLGMGRGGVNSYQ-----------DSKVGYYLTPCHPYPRLI-STPDTTS
        V +Y  M   G++ P+ + H ++   L L++ Q+ PN W +F+   ILWG L  G   ++  +            +K  Y+  P     RL+   PD+  
Subjt:  VAVYVDMLKRGVQFPMVSAHGKVLGMLCLALVQLTPNIWTVFLICRILWGDLGMGRGGVNSYQ-----------DSKVGYYLTPCHPYPRLI-STPDTTS

Query:  GWRAKWFFVGGS-WKEICPPHS
         W+ ++FFV G+ W  +C P S
Subjt:  GWRAKWFFVGGS-WKEICPPHS

A0A7N2MQN2 Uncharacterized protein1.9e-0630.63Show/hide
Query:  VAVYVDMLKRGVQFPMVSAHGKVLGMLCLALVQLTPNIWTVFLICRILWGDLGMG------RGGVNSYQDSKVG-----YYLTPCHPYPRLI-STPDTTS
        V VY  +LK G++FP+ + H ++L  L L++ Q++PN W VF+   IL+G +  G      R  ++ Y+  ++      Y      P  ++I  TPD+  
Subjt:  VAVYVDMLKRGVQFPMVSAHGKVLGMLCLALVQLTPNIWTVFLICRILWGDLGMG------RGGVNSYQDSKVG-----YYLTPCHPYPRLI-STPDTTS

Query:  GWRAKWFFVGG
         W++++FF+ G
Subjt:  GWRAKWFFVGG

A0A7N2MSX9 Uncharacterized protein1.9e-0630.63Show/hide
Query:  VAVYVDMLKRGVQFPMVSAHGKVLGMLCLALVQLTPNIWTVFLICRILWGDLGMG------RGGVNSYQDSKVG-----YYLTPCHPYPRLI-STPDTTS
        V VY  +LK G++FP+ + H ++L  L L++ Q++PN W VF+   IL+G +  G      R  ++ Y+  ++      Y      P  ++I  TPD+  
Subjt:  VAVYVDMLKRGVQFPMVSAHGKVLGMLCLALVQLTPNIWTVFLICRILWGDLGMG------RGGVNSYQDSKVG-----YYLTPCHPYPRLI-STPDTTS

Query:  GWRAKWFFVGG
         W++++FF+ G
Subjt:  GWRAKWFFVGG

A0A7N2MUL0 BED-type domain-containing protein4.9e-0725.6Show/hide
Query:  VAVYVDMLKRGVQFPMVSAHGKVLGMLCLALVQLTPNIWTVFLICRILWGDLGMGRGGVNSYQ-----------DSKVGYYLTPCHPYPRLIS-TPDTTS
        V +Y  M   G++ P+ + H ++   L L++ Q+ PN W +F+   ILWG L  G   ++  +             K  Y+  P     RL+S  PD+  
Subjt:  VAVYVDMLKRGVQFPMVSAHGKVLGMLCLALVQLTPNIWTVFLICRILWGDLGMGRGGVNSYQ-----------DSKVGYYLTPCHPYPRLIS-TPDTTS

Query:  GWRAKWFFVGGS-WKEICPPHSNFDIPTKY--------EKSEKLKLRVRAGVEDFLVHILDLPDHRRE
         W++++FFV G+ W  +C P     +P  Y         +S   +  +     +F+  IL +P  +R+
Subjt:  GWRAKWFFVGGS-WKEICPPHSNFDIPTKY--------EKSEKLKLRVRAGVEDFLVHILDLPDHRRE

A0A7N2R719 Uncharacterized protein2.4e-0630.63Show/hide
Query:  VAVYVDMLKRGVQFPMVSAHGKVLGMLCLALVQLTPNIWTVFLICRILWGDLGMG------RGGVNSYQDSKVG-----YYLTPCHPYPRLI-STPDTTS
        V VY  +LK G++FP+ + H ++L  L L++ Q++PN W VF+   IL+G +  G      R  ++ Y+  ++      Y      P  ++I  TPD+  
Subjt:  VAVYVDMLKRGVQFPMVSAHGKVLGMLCLALVQLTPNIWTVFLICRILWGDLGMG------RGGVNSYQDSKVG-----YYLTPCHPYPRLI-STPDTTS

Query:  GWRAKWFFVGG
         W++++FF+ G
Subjt:  GWRAKWFFVGG

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGAGTTCTGATTCGGATTATGAATACAAAACTCGAAATACCAGGAACTTATCTTCCCATCCTGGTGGATTTAGATCTCCCTTTCCCATCGACATGAAATCTAGCTTGTC
CGAACAACGTTTGCCCCCTCCGGAAGGTTGGGTGGCAGTGTATGTTGACATGTTGAAGAGGGGCGTCCAATTTCCAATGGTCTCGGCCCACGGAAAGGTGTTGGGCATGC
TTTGTCTCGCTCTCGTTCAACTCACTCCCAACATTTGGACTGTGTTCTTGATATGTCGCATTTTATGGGGTGATCTTGGGATGGGGAGGGGGGGGGTGAATAGTTACCAG
GATAGTAAAGTTGGGTACTACCTGACCCCCTGTCACCCCTATCCCCGTCTTATTTCTACTCCCGATACTACTAGCGGGTGGCGAGCCAAGTGGTTCTTCGTAGGAGGGTC
GTGGAAAGAGATATGTCCCCCACACTCCAATTTTGATATCCCGACCAAGTACGAGAAGAGTGAGAAGCTTAAACTACGAGTGCGAGCTGGGGTGGAGGACTTTTTGGTAC
ACATTTTGGATCTTCCGGACCATCGACGGGAGGGTACTAACATGGAGGCTGATAACTATGCCAGCACCGATGGGGATGACGGGTTCGATATGATTGACTGCCCTGCGTAT
GACCCTACTCAATTTGCCATAGAGGATCTTGCCTTAGACGCCAACATCACAAGTATGTTTGGTGGCCAAACCGTCGTGGCTCTTGGGGGGATGGAGTCTGGTCTTGACCG
AAGCGAAGTGGACTATAGAGTGCCTGTAGGGCCGTACACTACTACTTCTGATATGGTGGAGTCTTTGACCGTCGCTATGGAAGCTTGGAATGGGGTTCATGCGGTGTCTC
CACCACCAAGCAACGACAATTTCCTTCGCTCCATCAACGATGGTTTCCTGTTCATGCAAGCGTCTTTCCTGCGTTTGGCTCATGGTGTTCACGCCGTGGCGACGGATCAG
GTCCATATTCGCTTTACTTGTGAGGAGGAGGGTGTCTCTACTCGGCTACGAGCAGAATTGGCGGCTGCCCTAGAAGCTCAGCGGAAGACTGAGGTGTCTTTACAAGCTGC
AAATACCAAGCTGGGGGCCGCGGAGCAAAAGTTGGCTGCCACGGTGGCGTGTCTCTCCACTACCAACAAGGATTTGAAGAAGGCGAAATCCACTATAGAGCGCCTTACTC
GTGAGATAGACACTGTGAAGAGCCAATGGAATGATGCTGTTTATCTTGCTGAGGCAGTCAAGACATCCTCTGCTTTTCTTATACTTTAG
mRNA sequenceShow/hide mRNA sequence
ATGAGTTCTGATTCGGATTATGAATACAAAACTCGAAATACCAGGAACTTATCTTCCCATCCTGGTGGATTTAGATCTCCCTTTCCCATCGACATGAAATCTAGCTTGTC
CGAACAACGTTTGCCCCCTCCGGAAGGTTGGGTGGCAGTGTATGTTGACATGTTGAAGAGGGGCGTCCAATTTCCAATGGTCTCGGCCCACGGAAAGGTGTTGGGCATGC
TTTGTCTCGCTCTCGTTCAACTCACTCCCAACATTTGGACTGTGTTCTTGATATGTCGCATTTTATGGGGTGATCTTGGGATGGGGAGGGGGGGGGTGAATAGTTACCAG
GATAGTAAAGTTGGGTACTACCTGACCCCCTGTCACCCCTATCCCCGTCTTATTTCTACTCCCGATACTACTAGCGGGTGGCGAGCCAAGTGGTTCTTCGTAGGAGGGTC
GTGGAAAGAGATATGTCCCCCACACTCCAATTTTGATATCCCGACCAAGTACGAGAAGAGTGAGAAGCTTAAACTACGAGTGCGAGCTGGGGTGGAGGACTTTTTGGTAC
ACATTTTGGATCTTCCGGACCATCGACGGGAGGGTACTAACATGGAGGCTGATAACTATGCCAGCACCGATGGGGATGACGGGTTCGATATGATTGACTGCCCTGCGTAT
GACCCTACTCAATTTGCCATAGAGGATCTTGCCTTAGACGCCAACATCACAAGTATGTTTGGTGGCCAAACCGTCGTGGCTCTTGGGGGGATGGAGTCTGGTCTTGACCG
AAGCGAAGTGGACTATAGAGTGCCTGTAGGGCCGTACACTACTACTTCTGATATGGTGGAGTCTTTGACCGTCGCTATGGAAGCTTGGAATGGGGTTCATGCGGTGTCTC
CACCACCAAGCAACGACAATTTCCTTCGCTCCATCAACGATGGTTTCCTGTTCATGCAAGCGTCTTTCCTGCGTTTGGCTCATGGTGTTCACGCCGTGGCGACGGATCAG
GTCCATATTCGCTTTACTTGTGAGGAGGAGGGTGTCTCTACTCGGCTACGAGCAGAATTGGCGGCTGCCCTAGAAGCTCAGCGGAAGACTGAGGTGTCTTTACAAGCTGC
AAATACCAAGCTGGGGGCCGCGGAGCAAAAGTTGGCTGCCACGGTGGCGTGTCTCTCCACTACCAACAAGGATTTGAAGAAGGCGAAATCCACTATAGAGCGCCTTACTC
GTGAGATAGACACTGTGAAGAGCCAATGGAATGATGCTGTTTATCTTGCTGAGGCAGTCAAGACATCCTCTGCTTTTCTTATACTTTAG
Protein sequenceShow/hide protein sequence
MSSDSDYEYKTRNTRNLSSHPGGFRSPFPIDMKSSLSEQRLPPPEGWVAVYVDMLKRGVQFPMVSAHGKVLGMLCLALVQLTPNIWTVFLICRILWGDLGMGRGGVNSYQ
DSKVGYYLTPCHPYPRLISTPDTTSGWRAKWFFVGGSWKEICPPHSNFDIPTKYEKSEKLKLRVRAGVEDFLVHILDLPDHRREGTNMEADNYASTDGDDGFDMIDCPAY
DPTQFAIEDLALDANITSMFGGQTVVALGGMESGLDRSEVDYRVPVGPYTTTSDMVESLTVAMEAWNGVHAVSPPPSNDNFLRSINDGFLFMQASFLRLAHGVHAVATDQ
VHIRFTCEEEGVSTRLRAELAAALEAQRKTEVSLQAANTKLGAAEQKLAATVACLSTTNKDLKKAKSTIERLTREIDTVKSQWNDAVYLAEAVKTSSAFLIL