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Sed0011824 (gene) of Chayote v1 genome

Gene IDSed0011824
OrganismSechium edule (Chayote v1)
DescriptionXylanolytic transcriptional activator xlnR like
Genome locationLG03:11082098..11085800
RNA-Seq ExpressionSed0011824
SyntenySed0011824
Gene Ontology termsGO:0016021 - integral component of membrane (cellular component)
InterPro domainsIPR039632 - Transmembrane protein 42


Homology Show/hide homology
GenBank top hitse value%identityAlignment
XP_004152660.1 uncharacterized protein LOC101208185 [Cucumis sativus]8.7e-5194.74Show/hide
Query:  MEGNKGYVWAISAGFNAAFAAISAKLFSYTLIRYGLVIAFNMAMWGCYVNSLKALSSLQATGTNFSANFLCSGLAGFFLFEEALSFKWFVGALLIVIGVL
        MEG+KGYVWAISAG NAAFAAI+AKLFSYTLIRY LVIAFN+AMWGCYVNSLKALSSLQATGTNFSANFLCSGLAGFFLFEEALSF+WFVGALLIVIGVL
Subjt:  MEGNKGYVWAISAGFNAAFAAISAKLFSYTLIRYGLVIAFNMAMWGCYVNSLKALSSLQATGTNFSANFLCSGLAGFFLFEEALSFKWFVGALLIVIGVL

Query:  ILNKSSIEKKESKD
        ILNKSSIEKKESKD
Subjt:  ILNKSSIEKKESKD

XP_008444781.1 PREDICTED: multidrug resistance protein EbrB [Cucumis melo]1.6e-4991.23Show/hide
Query:  MEGNKGYVWAISAGFNAAFAAISAKLFSYTLIRYGLVIAFNMAMWGCYVNSLKALSSLQATGTNFSANFLCSGLAGFFLFEEALSFKWFVGALLIVIGVL
        MEG+KGYVWAISAG NAA +AI+AKLFSYT  RYGLVIAFN+AMWGCYVNSLKALSSLQATGTNFSANFLCSGLAGFFLFEEALSF+WFVGA+LIVIGVL
Subjt:  MEGNKGYVWAISAGFNAAFAAISAKLFSYTLIRYGLVIAFNMAMWGCYVNSLKALSSLQATGTNFSANFLCSGLAGFFLFEEALSFKWFVGALLIVIGVL

Query:  ILNKSSIEKKESKD
        ILNKSSIEKKESKD
Subjt:  ILNKSSIEKKESKD

XP_022144157.1 uncharacterized protein LOC111013916 [Momordica charantia]1.2e-4790.27Show/hide
Query:  EGNKGYVWAISAGFNAAFAAISAKLFSYTLIRYGLVIAFNMAMWGCYVNSLKALSSLQATGTNFSANFLCSGLAGFFLFEEALSFKWFVGALLIVIGVLI
        +G KGYVWAISAGFNAA AAI+AKLFS TLIR+GLVIAFN+AMWGC+VNSLKALSSLQATGTNFS NFLCSGLAGFFLFEEALSF+WFVGALLIVIGVLI
Subjt:  EGNKGYVWAISAGFNAAFAAISAKLFSYTLIRYGLVIAFNMAMWGCYVNSLKALSSLQATGTNFSANFLCSGLAGFFLFEEALSFKWFVGALLIVIGVLI

Query:  LNKSSIEKKESKD
        LNKSSIEKKE+KD
Subjt:  LNKSSIEKKESKD

XP_022961823.1 uncharacterized protein LOC111462473 [Cucurbita moschata]2.0e-4789.38Show/hide
Query:  EGNKGYVWAISAGFNAAFAAISAKLFSYTLIRYGLVIAFNMAMWGCYVNSLKALSSLQATGTNFSANFLCSGLAGFFLFEEALSFKWFVGALLIVIGVLI
        +G KGY+WAISAG NAAFAAI+AKLFS TLIRYGLVIAFN+AMWGCYVNSLKALSSLQATGTNFSANFLCSGLAGFFLFEE LSF+WFVGA+LIV+GVLI
Subjt:  EGNKGYVWAISAGFNAAFAAISAKLFSYTLIRYGLVIAFNMAMWGCYVNSLKALSSLQATGTNFSANFLCSGLAGFFLFEEALSFKWFVGALLIVIGVLI

Query:  LNKSSIEKKESKD
        LN+SSIEKKESKD
Subjt:  LNKSSIEKKESKD

XP_022997366.1 uncharacterized protein LOC111492304 [Cucurbita maxima]5.3e-4890.27Show/hide
Query:  EGNKGYVWAISAGFNAAFAAISAKLFSYTLIRYGLVIAFNMAMWGCYVNSLKALSSLQATGTNFSANFLCSGLAGFFLFEEALSFKWFVGALLIVIGVLI
        +G KGY+WAISAG NAAFAAI+AKLFS TLIRYGLVIAFN+AMWGCYVNSLKALSSLQATGTNFSANFLCSGLAGFFLFEEALSF+WFVGA+LIV+GVLI
Subjt:  EGNKGYVWAISAGFNAAFAAISAKLFSYTLIRYGLVIAFNMAMWGCYVNSLKALSSLQATGTNFSANFLCSGLAGFFLFEEALSFKWFVGALLIVIGVLI

Query:  LNKSSIEKKESKD
        LN+SSIEKKESKD
Subjt:  LNKSSIEKKESKD

TrEMBL top hitse value%identityAlignment
A0A0A0LPF1 Uncharacterized protein4.2e-5194.74Show/hide
Query:  MEGNKGYVWAISAGFNAAFAAISAKLFSYTLIRYGLVIAFNMAMWGCYVNSLKALSSLQATGTNFSANFLCSGLAGFFLFEEALSFKWFVGALLIVIGVL
        MEG+KGYVWAISAG NAAFAAI+AKLFSYTLIRY LVIAFN+AMWGCYVNSLKALSSLQATGTNFSANFLCSGLAGFFLFEEALSF+WFVGALLIVIGVL
Subjt:  MEGNKGYVWAISAGFNAAFAAISAKLFSYTLIRYGLVIAFNMAMWGCYVNSLKALSSLQATGTNFSANFLCSGLAGFFLFEEALSFKWFVGALLIVIGVL

Query:  ILNKSSIEKKESKD
        ILNKSSIEKKESKD
Subjt:  ILNKSSIEKKESKD

A0A1S3BB59 multidrug resistance protein EbrB8.0e-5091.23Show/hide
Query:  MEGNKGYVWAISAGFNAAFAAISAKLFSYTLIRYGLVIAFNMAMWGCYVNSLKALSSLQATGTNFSANFLCSGLAGFFLFEEALSFKWFVGALLIVIGVL
        MEG+KGYVWAISAG NAA +AI+AKLFSYT  RYGLVIAFN+AMWGCYVNSLKALSSLQATGTNFSANFLCSGLAGFFLFEEALSF+WFVGA+LIVIGVL
Subjt:  MEGNKGYVWAISAGFNAAFAAISAKLFSYTLIRYGLVIAFNMAMWGCYVNSLKALSSLQATGTNFSANFLCSGLAGFFLFEEALSFKWFVGALLIVIGVL

Query:  ILNKSSIEKKESKD
        ILNKSSIEKKESKD
Subjt:  ILNKSSIEKKESKD

A0A6J1CSW2 uncharacterized protein LOC1110139165.7e-4890.27Show/hide
Query:  EGNKGYVWAISAGFNAAFAAISAKLFSYTLIRYGLVIAFNMAMWGCYVNSLKALSSLQATGTNFSANFLCSGLAGFFLFEEALSFKWFVGALLIVIGVLI
        +G KGYVWAISAGFNAA AAI+AKLFS TLIR+GLVIAFN+AMWGC+VNSLKALSSLQATGTNFS NFLCSGLAGFFLFEEALSF+WFVGALLIVIGVLI
Subjt:  EGNKGYVWAISAGFNAAFAAISAKLFSYTLIRYGLVIAFNMAMWGCYVNSLKALSSLQATGTNFSANFLCSGLAGFFLFEEALSFKWFVGALLIVIGVLI

Query:  LNKSSIEKKESKD
        LNKSSIEKKE+KD
Subjt:  LNKSSIEKKESKD

A0A6J1HCY1 uncharacterized protein LOC1114624739.7e-4889.38Show/hide
Query:  EGNKGYVWAISAGFNAAFAAISAKLFSYTLIRYGLVIAFNMAMWGCYVNSLKALSSLQATGTNFSANFLCSGLAGFFLFEEALSFKWFVGALLIVIGVLI
        +G KGY+WAISAG NAAFAAI+AKLFS TLIRYGLVIAFN+AMWGCYVNSLKALSSLQATGTNFSANFLCSGLAGFFLFEE LSF+WFVGA+LIV+GVLI
Subjt:  EGNKGYVWAISAGFNAAFAAISAKLFSYTLIRYGLVIAFNMAMWGCYVNSLKALSSLQATGTNFSANFLCSGLAGFFLFEEALSFKWFVGALLIVIGVLI

Query:  LNKSSIEKKESKD
        LN+SSIEKKESKD
Subjt:  LNKSSIEKKESKD

A0A6J1K7A2 uncharacterized protein LOC1114923042.6e-4890.27Show/hide
Query:  EGNKGYVWAISAGFNAAFAAISAKLFSYTLIRYGLVIAFNMAMWGCYVNSLKALSSLQATGTNFSANFLCSGLAGFFLFEEALSFKWFVGALLIVIGVLI
        +G KGY+WAISAG NAAFAAI+AKLFS TLIRYGLVIAFN+AMWGCYVNSLKALSSLQATGTNFSANFLCSGLAGFFLFEEALSF+WFVGA+LIV+GVLI
Subjt:  EGNKGYVWAISAGFNAAFAAISAKLFSYTLIRYGLVIAFNMAMWGCYVNSLKALSSLQATGTNFSANFLCSGLAGFFLFEEALSFKWFVGALLIVIGVLI

Query:  LNKSSIEKKESKD
        LN+SSIEKKESKD
Subjt:  LNKSSIEKKESKD

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
AT1G30845.1 unknown protein8.4e-3667.27Show/hide
Query:  KGYVWAISAGFNAAFAAISAKLFSYTLIRYGLVIAFNMAMWGCYVNSLKALSSLQATGTNFSANFLCSGLAGFFLFEEALSFKWFVGALLIVIGVLILNK
        +GY+ A++AG NAA AAISAK F+  +I+YGLV+  N+ MW CYVNSL+ALSSLQAT TNF+ANFL SGLAG FLF+E+LSF+WF GAL I  GVLIL+K
Subjt:  KGYVWAISAGFNAAFAAISAKLFSYTLIRYGLVIAFNMAMWGCYVNSLKALSSLQATGTNFSANFLCSGLAGFFLFEEALSFKWFVGALLIVIGVLILNK

Query:  SSIEKKESKD
        SS++KK S D
Subjt:  SSIEKKESKD


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGGAAGGGAACAAGGGTTACGTGTGGGCGATTTCAGCCGGTTTCAACGCTGCTTTTGCCGCCATTTCCGCCAAGCTTTTCTCCTACACGTTAATTAGGTATGGGCTGGT
AATAGCGTTCAACATGGCAATGTGGGGATGTTATGTCAATAGCTTAAAAGCTCTCTCATCGCTACAAGCTACGGGAACGAACTTTTCAGCTAACTTTCTTTGTTCTGGTC
TAGCCGGTTTCTTTTTATTCGAAGAAGCATTATCATTCAAGTGGTTTGTAGGTGCTTTATTGATTGTTATTGGCGTACTGATTTTAAATAAGTCTAGCATTGAGAAGAAA
GAAAGCAAGGACTAG
mRNA sequenceShow/hide mRNA sequence
AAAGGAGGAGAATTTTCAGCCTGCAATGGAAGGGAACAAGGGTTACGTGTGGGCGATTTCAGCCGGTTTCAACGCTGCTTTTGCCGCCATTTCCGCCAAGCTTTTCTCCT
ACACGTTAATTAGGTATGGGCTGGTAATAGCGTTCAACATGGCAATGTGGGGATGTTATGTCAATAGCTTAAAAGCTCTCTCATCGCTACAAGCTACGGGAACGAACTTT
TCAGCTAACTTTCTTTGTTCTGGTCTAGCCGGTTTCTTTTTATTCGAAGAAGCATTATCATTCAAGTGGTTTGTAGGTGCTTTATTGATTGTTATTGGCGTACTGATTTT
AAATAAGTCTAGCATTGAGAAGAAAGAAAGCAAGGACTAGACTTTGCTCTTAATTAGTCATCAATCATTTCATCATTTAGTCTTGCCTTTCAACCTGCACTGCAAGTATC
CTCCGACTGTTGGAAGAAATATGCGATCGATTCACAATCTGCGTTCAACGTTACAGCCAGCTCCATTTACGGTTGACTGTGTTCTCGACATGTAGTTGAATTAACCAGGT
AATTTCTTATGGTTTTAGCAGGGAGATGTGAATTAAAGAAGTATCTACCTGCCCTAGTTATCCAGTTGAGACTTCAGAATTGCTCAAGTTCTCTTTGACAAGGGAATGCT
ACTCATTTTTCTGCAGAAATATTTATCTGCTTGTAGGATTTCATTTTATATATATATGTATGTACTTGATATTTATAGTTTATCCTTGTTTACAACTGTTTTTTTGTTTT
GATTTTCAACATTTAGATCTTCAAAATGTAGATGCTTAACATGAAAATAGCTATGGATAGAAGCATCTTTCTTTA
Protein sequenceShow/hide protein sequence
MEGNKGYVWAISAGFNAAFAAISAKLFSYTLIRYGLVIAFNMAMWGCYVNSLKALSSLQATGTNFSANFLCSGLAGFFLFEEALSFKWFVGALLIVIGVLILNKSSIEKK
ESKD