; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; CuGenDBv2

Sed0011852 (gene) of Chayote v1 genome

Gene IDSed0011852
OrganismSechium edule (Chayote v1)
DescriptionTOPLESS-related 2
Genome locationLG11:1229663..1230867
RNA-Seq ExpressionSed0011852
SyntenySed0011852
Gene Ontology termsGO:0005515 - protein binding (molecular function)
InterPro domainsIPR006594 - LIS1 homology motif


Homology Show/hide homology
GenBank top hitse value%identityAlignment
No hits found
TrEMBL top hitse value%identityAlignment
A0A498HBR4 Uncharacterized protein6.3e-0466.67Show/hide
Query:  VRGSVYKIGDVNMSSLDRDLVFLILQFLEEKGFKETAHK
        + GS  K G V MSSL R+LVFLILQFL+E+ FKET HK
Subjt:  VRGSVYKIGDVNMSSLDRDLVFLILQFLEEKGFKETAHK
A0A498J275 Uncharacterized protein6.3e-0466.67Show/hide
Query:  VRGSVYKIGDVNMSSLDRDLVFLILQFLEEKGFKETAHK
        + GS  K G V MSSL R+LVFLILQFL+E+ FKET HK
Subjt:  VRGSVYKIGDVNMSSLDRDLVFLILQFLEEKGFKETAHK
A0A540KZ20 Uncharacterized protein6.3e-0466.67Show/hide
Query:  VRGSVYKIGDVNMSSLDRDLVFLILQFLEEKGFKETAHK
        + GS  K G V MSSL R+LVFLILQFL+E+ FKET HK
Subjt:  VRGSVYKIGDVNMSSLDRDLVFLILQFLEEKGFKETAHK
SwissProt top hitse value%identityAlignment
Q0J7U6 Protein TOPLESS-RELATED PROTEIN 22.7e-0477.78Show/hide
Query:  MSSLDRDLVFLILQFLEEKGFKETAHK
        MSSL R+LVFLILQFL+E+ FKET HK
Subjt:  MSSLDRDLVFLILQFLEEKGFKETAHK
Q0WV90 Topless-related protein 12.7e-0477.78Show/hide
Query:  MSSLDRDLVFLILQFLEEKGFKETAHK
        MSSL R+LVFLILQFL+E+ FKET HK
Subjt:  MSSLDRDLVFLILQFLEEKGFKETAHK
Q10NY2 Protein TPR32.7e-0477.78Show/hide
Query:  MSSLDRDLVFLILQFLEEKGFKETAHK
        MSSL R+LVFLILQFL+E+ FKET HK
Subjt:  MSSLDRDLVFLILQFLEEKGFKETAHK
Q5NBT9 Protein TPR12.7e-0477.78Show/hide
Query:  MSSLDRDLVFLILQFLEEKGFKETAHK
        MSSL R+LVFLILQFL+E+ FKET HK
Subjt:  MSSLDRDLVFLILQFLEEKGFKETAHK
Q94AI7 Protein TOPLESS2.7e-0477.78Show/hide
Query:  MSSLDRDLVFLILQFLEEKGFKETAHK
        MSSL R+LVFLILQFL+E+ FKET HK
Subjt:  MSSLDRDLVFLILQFLEEKGFKETAHK
Arabidopsis top hitse value%identityAlignment
AT1G15750.1 Transducin family protein / WD-40 repeat family protein1.9e-0577.78Show/hide
Query:  MSSLDRDLVFLILQFLEEKGFKETAHK
        MSSL R+LVFLILQFL+E+ FKET HK
Subjt:  MSSLDRDLVFLILQFLEEKGFKETAHK
AT1G15750.2 Transducin family protein / WD-40 repeat family protein1.9e-0577.78Show/hide
Query:  MSSLDRDLVFLILQFLEEKGFKETAHK
        MSSL R+LVFLILQFL+E+ FKET HK
Subjt:  MSSLDRDLVFLILQFLEEKGFKETAHK
AT1G15750.3 Transducin family protein / WD-40 repeat family protein1.9e-0577.78Show/hide
Query:  MSSLDRDLVFLILQFLEEKGFKETAHK
        MSSL R+LVFLILQFL+E+ FKET HK
Subjt:  MSSLDRDLVFLILQFLEEKGFKETAHK
AT1G80490.1 TOPLESS-related 11.9e-0577.78Show/hide
Query:  MSSLDRDLVFLILQFLEEKGFKETAHK
        MSSL R+LVFLILQFL+E+ FKET HK
Subjt:  MSSLDRDLVFLILQFLEEKGFKETAHK
AT1G80490.2 TOPLESS-related 11.9e-0577.78Show/hide
Query:  MSSLDRDLVFLILQFLEEKGFKETAHK
        MSSL R+LVFLILQFL+E+ FKET HK
Subjt:  MSSLDRDLVFLILQFLEEKGFKETAHK

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGCACTGTGAGAATCAAAGGCCAAACCCTGACATAAAGCCTATCGGTGCCATGGGTGCACGTGATATTGTTCGAGGTTCTGTTTATAAAATTGGAGACGTTAATATGTC
TTCTCTTGATAGAGACCTCGTGTTTCTCATACTTCAGTTTTTGGAAGAGAAGGGTTTCAAGGAGACAGCTCATAAGTATGTTTAG
mRNA sequenceShow/hide mRNA sequence
ATGCACTGTGAGAATCAAAGGCCAAACCCTGACATAAAGCCTATCGGTGCCATGGGTGCACGTGATATTGTTCGAGGTTCTGTTTATAAAATTGGAGACGTTAATATGTC
TTCTCTTGATAGAGACCTCGTGTTTCTCATACTTCAGTTTTTGGAAGAGAAGGGTTTCAAGGAGACAGCTCATAAGTATGTTTAG
Protein sequenceShow/hide protein sequence
MHCENQRPNPDIKPIGAMGARDIVRGSVYKIGDVNMSSLDRDLVFLILQFLEEKGFKETAHKYV