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Sed0011865 (gene) of Chayote v1 genome

Gene IDSed0011865
OrganismSechium edule (Chayote v1)
DescriptionTy3-gypsy retrotransposon protein
Genome locationLG10:12785639..12785900
RNA-Seq ExpressionSed0011865
SyntenySed0011865
Gene Ontology termsGO:0006259 - DNA metabolic process (biological process)
GO:0003676 - nucleic acid binding (molecular function)
GO:0140640 - catalytic activity, acting on a nucleic acid (molecular function)
InterPro domainsNA


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAA0050373.1 ty3-gypsy retrotransposon protein [Cucumis melo var. makuwa]8.3e-1052.44Show/hide
Query:  MSVRMTNTSTSEDRLAECEKKINMLLKVVKEKNDEITSLKNQIESRDVVESSHTKITHN----------IMLQLLHCLFNSC
        MSV  TN  TSEDR+ E EKKINML+K V+E++ EI SLKN IES D  +SSH     N          I  QL HC+F+SC
Subjt:  MSVRMTNTSTSEDRLAECEKKINMLLKVVKEKNDEITSLKNQIESRDVVESSHTKITHN----------IMLQLLHCLFNSC

KAA0051994.1 ty3-gypsy retrotransposon protein [Cucumis melo var. makuwa]3.7e-1063.33Show/hide
Query:  MSVRMTNTSTSEDRLAECEKKINMLLKVVKEKNDEITSLKNQIESRDVVESSHTKITHNI
        MSV +T+  TSEDR+AE EKK+NML+K V+E++ EI SLKN IESRD +ESSHT I  N+
Subjt:  MSVRMTNTSTSEDRLAECEKKINMLLKVVKEKNDEITSLKNQIESRDVVESSHTKITHNI

KAA0057696.1 ty3-gypsy retrotransposon protein [Cucumis melo var. makuwa]8.3e-1063.33Show/hide
Query:  MSVRMTNTSTSEDRLAECEKKINMLLKVVKEKNDEITSLKNQIESRDVVESSHTKITHNI
        MSV +T+  TSEDR+AE EKK+NML+K V+E++ EI SLKN IESRD  ESSHT I  N+
Subjt:  MSVRMTNTSTSEDRLAECEKKINMLLKVVKEKNDEITSLKNQIESRDVVESSHTKITHNI

KAA0065417.1 ty3-gypsy retrotransposon protein [Cucumis melo var. makuwa]1.8e-0963.33Show/hide
Query:  MSVRMTNTSTSEDRLAECEKKINMLLKVVKEKNDEITSLKNQIESRDVVESSHTKITHNI
        MSV +T+  TSEDR AE EKK+NML+K V+E++ EI SLKN IESRD  ESSHT I  N+
Subjt:  MSVRMTNTSTSEDRLAECEKKINMLLKVVKEKNDEITSLKNQIESRDVVESSHTKITHNI

TYK25809.1 ty3-gypsy retrotransposon protein [Cucumis melo var. makuwa]2.4e-0961.67Show/hide
Query:  MSVRMTNTSTSEDRLAECEKKINMLLKVVKEKNDEITSLKNQIESRDVVESSHTKITHNI
        MSV +TN  TSEDR+AE EKK+NML+K V+E++ EI SLKN IESR+  ESSHT    N+
Subjt:  MSVRMTNTSTSEDRLAECEKKINMLLKVVKEKNDEITSLKNQIESRDVVESSHTKITHNI

TrEMBL top hitse value%identityAlignment
A0A5A7U9H0 Ty3-gypsy retrotransposon protein1.8e-1063.33Show/hide
Query:  MSVRMTNTSTSEDRLAECEKKINMLLKVVKEKNDEITSLKNQIESRDVVESSHTKITHNI
        MSV +T+  TSEDR+AE EKK+NML+K V+E++ EI SLKN IESRD +ESSHT I  N+
Subjt:  MSVRMTNTSTSEDRLAECEKKINMLLKVVKEKNDEITSLKNQIESRDVVESSHTKITHNI

A0A5A7UU70 Ty3-gypsy retrotransposon protein4.0e-1063.33Show/hide
Query:  MSVRMTNTSTSEDRLAECEKKINMLLKVVKEKNDEITSLKNQIESRDVVESSHTKITHNI
        MSV +T+  TSEDR+AE EKK+NML+K V+E++ EI SLKN IESRD  ESSHT I  N+
Subjt:  MSVRMTNTSTSEDRLAECEKKINMLLKVVKEKNDEITSLKNQIESRDVVESSHTKITHNI

A0A5A7VEA7 Ty3-gypsy retrotransposon protein8.9e-1063.33Show/hide
Query:  MSVRMTNTSTSEDRLAECEKKINMLLKVVKEKNDEITSLKNQIESRDVVESSHTKITHNI
        MSV +T+  TSEDR AE EKK+NML+K V+E++ EI SLKN IESRD  ESSHT I  N+
Subjt:  MSVRMTNTSTSEDRLAECEKKINMLLKVVKEKNDEITSLKNQIESRDVVESSHTKITHNI

A0A5D3BZH1 Ty3-gypsy retrotransposon protein4.0e-1052.44Show/hide
Query:  MSVRMTNTSTSEDRLAECEKKINMLLKVVKEKNDEITSLKNQIESRDVVESSHTKITHN----------IMLQLLHCLFNSC
        MSV  TN  TSEDR+ E EKKINML+K V+E++ EI SLKN IES D  +SSH     N          I  QL HC+F+SC
Subjt:  MSVRMTNTSTSEDRLAECEKKINMLLKVVKEKNDEITSLKNQIESRDVVESSHTKITHN----------IMLQLLHCLFNSC

A0A5D3DR45 Ty3-gypsy retrotransposon protein1.2e-0961.67Show/hide
Query:  MSVRMTNTSTSEDRLAECEKKINMLLKVVKEKNDEITSLKNQIESRDVVESSHTKITHNI
        MSV +TN  TSEDR+AE EKK+NML+K V+E++ EI SLKN IESR+  ESSHT    N+
Subjt:  MSVRMTNTSTSEDRLAECEKKINMLLKVVKEKNDEITSLKNQIESRDVVESSHTKITHNI

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGTCCGTGAGGATGACTAATACGTCAACTAGCGAAGATAGACTAGCTGAATGTGAAAAGAAGATTAACATGTTATTGAAAGTAGTCAAAGAAAAGAATGATGAAATCAC
TTCTCTAAAGAACCAAATCGAAAGTCGAGATGTTGTTGAGTCTAGCCATACTAAGATCACTCACAACATAATGCTTCAATTGCTGCACTGTCTGTTCAACAGTTGCAAGA
TATGA
mRNA sequenceShow/hide mRNA sequence
ATGTCCGTGAGGATGACTAATACGTCAACTAGCGAAGATAGACTAGCTGAATGTGAAAAGAAGATTAACATGTTATTGAAAGTAGTCAAAGAAAAGAATGATGAAATCAC
TTCTCTAAAGAACCAAATCGAAAGTCGAGATGTTGTTGAGTCTAGCCATACTAAGATCACTCACAACATAATGCTTCAATTGCTGCACTGTCTGTTCAACAGTTGCAAGA
TATGA
Protein sequenceShow/hide protein sequence
MSVRMTNTSTSEDRLAECEKKINMLLKVVKEKNDEITSLKNQIESRDVVESSHTKITHNIMLQLLHCLFNSCKI