CuGenDBv2

Gene ID	Sed0011876
Organism	Sechium edule (Chayote v1)
Description	serine/arginine-rich splicing factor 11
Genome location	LG04:47701885..47705119
RNA-Seq Expression	Sed0011876
Synteny	Sed0011876
Gene Ontology terms	GO:0016853 - isomerase activity (molecular function)
InterPro domains	NA

Homology

Show/hide homology

GenBank top hits

e value

%identity

Alignment

XP_008450603.1 PREDICTED: peptidyl-prolyl cis-trans isomerase G [Cucumis melo]

5.7e-57

88.52

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Query:  MAASSSSAT---SDSSSSSSRRRQRRRTRREKDRDTLRIRKKSRSHSKRRRRHRRSSSDSLSS--SESDDSRSDSSSQSEPETSGRSKRHKKDDRTKKDK
        MAASSS+ T   SDSSSSSSRRR+RRRTRREKDRDTLRIRKKSRSHSKR RRHRRSSSDSLSS  SESD +RS+SSS+SEPETS RSKRHKK+DRTKKDK
Subjt:  MAASSSSAT---SDSSSSSSRRRQRRRTRREKDRDTLRIRKKSRSHSKRRRRHRRSSSDSLSS--SESDDSRSDSSSQSEPETSGRSKRHKKDDRTKKDK

Query:  ERERSKSRHHKRRKQKAKEKQAEERSSSPVQLSKFLAREKDDGARRSAVSGKKILLKLDKSKEDKAEENKRNELLKFLNSSFD
        ERERS+S HHKRRK KAKEKQ EE SSSPVQLSKFLAREKDDG RRSAVSGKKILLKLDKSKEDKAEENKRNELLKFLNSSFD
Subjt:  ERERSKSRHHKRRKQKAKEKQAEERSSSPVQLSKFLAREKDDGARRSAVSGKKILLKLDKSKEDKAEENKRNELLKFLNSSFD

XP_022136184.1 serine/arginine-rich splicing factor 11 [Momordica charantia]

2.5e-60

91.26

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Query:  MAASSSSA---TSDSSSSSSRRRQRRRTRREKDRDTLRIRKKSRSHSKRRRRHRRSSSDSLSS--SESDDSRSDSSSQSEPETSGRSKRHKKDDRTKKDK
        MAASSSSA   TSDSSSSSSRRR+RRR+RR+KDRD LRIRKKSRSHSKRRRRHRRSSSDSLSS  SES+ SRS SSSQSEPETSGRSKRHKK+DRTKKDK
Subjt:  MAASSSSA---TSDSSSSSSRRRQRRRTRREKDRDTLRIRKKSRSHSKRRRRHRRSSSDSLSS--SESDDSRSDSSSQSEPETSGRSKRHKKDDRTKKDK

Query:  ERERSKSRHHKRRKQKAKEKQAEERSSSPVQLSKFLAREKDDGARRSAVSGKKILLKLDKSKEDKAEENKRNELLKFLNSSFD
        ERERSKS HHKRRK KAKEKQ EERSSSPVQLSKFLAREKDDGARRSAVSGKKILLKLDKSKEDKAEENKRNELLKFLNSSFD
Subjt:  ERERSKSRHHKRRKQKAKEKQAEERSSSPVQLSKFLAREKDDGARRSAVSGKKILLKLDKSKEDKAEENKRNELLKFLNSSFD

XP_022970036.1 probable splicing factor, arginine/serine-rich 7 isoform X1 [Cucurbita maxima]

7.0e-55

89.07

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Query:  MAASSSSA---TSDSSSSSSRRRQRRRTRREKDRDTLRIRKKSRSHSKRRRRHRRSSSDSLSS--SESDDSRSDSSSQSEPETSGRSKRHKKDDRTKKDK
        MAASSSSA   TSDSSSSSSRRR+RRRTRREKDRD LRIRKKSRSHSKRRRRHRRSSS+SLSS  SESD SRS SSSQSEPE SGRSKRHKK+D TK  K
Subjt:  MAASSSSA---TSDSSSSSSRRRQRRRTRREKDRDTLRIRKKSRSHSKRRRRHRRSSSDSLSS--SESDDSRSDSSSQSEPETSGRSKRHKKDDRTKKDK

Query:  ERERSKSRHHKRRKQKAKEKQAEERSSSPVQLSKFLAREKDDGARRSAVSGKKILLKLDKSKEDKAEENKRNELLKFLNSSFD
        ERERSKS+HHKRRK KAKEKQ EERSSSPVQLSKFLARE DDG RRSAVSGKKILLKLDKSKEDKAEENKRNELLKFLNSSFD
Subjt:  ERERSKSRHHKRRKQKAKEKQAEERSSSPVQLSKFLAREKDDGARRSAVSGKKILLKLDKSKEDKAEENKRNELLKFLNSSFD

XP_023531665.1 probable splicing factor, arginine/serine-rich 7 isoform X1 [Cucurbita pepo subsp. pepo]

2.4e-55

89.62

Show/hide

Query:  MAASSSSA---TSDSSSSSSRRRQRRRTRREKDRDTLRIRKKSRSHSKRRRRHRRSSSDSLSS--SESDDSRSDSSSQSEPETSGRSKRHKKDDRTKKDK
        MAASSSSA   TSDSSSSSSRRR+RRRTRREKDRD LRIRKKSRSHSKRRRRHRRSSS+SLSS  SESD SRS SSSQSEPE SGRSKRHKK+D TK  K
Subjt:  MAASSSSA---TSDSSSSSSRRRQRRRTRREKDRDTLRIRKKSRSHSKRRRRHRRSSSDSLSS--SESDDSRSDSSSQSEPETSGRSKRHKKDDRTKKDK

Query:  ERERSKSRHHKRRKQKAKEKQAEERSSSPVQLSKFLAREKDDGARRSAVSGKKILLKLDKSKEDKAEENKRNELLKFLNSSFD
        ERERSKSRHHKRRK KAKEKQ EERSSSPVQLSKFLARE DDG RRSAVSGKKILLKLDKSKEDKAEENKRNELLKFLNSSFD
Subjt:  ERERSKSRHHKRRKQKAKEKQAEERSSSPVQLSKFLAREKDDGARRSAVSGKKILLKLDKSKEDKAEENKRNELLKFLNSSFD

XP_038879353.1 NKAP family protein [Benincasa hispida]

7.5e-57

87.98

Show/hide

Query:  MAASSSSA---TSDSSSSSSRRRQRRRTRREKDRDTLRIRKKSRSHSKRRRRHRRSSSDSLSS--SESDDSRSDSSSQSEPETSGRSKRHKKDDRTKKDK
        MAASSSSA   TSDSSSSSSRRR+RRR RREKDRDTLR+RKKSRSHSKR RRHRRSSSDSLSS  SESD SR++SSSQSEPETSGRSKRHK++DR K+DK
Subjt:  MAASSSSA---TSDSSSSSSRRRQRRRTRREKDRDTLRIRKKSRSHSKRRRRHRRSSSDSLSS--SESDDSRSDSSSQSEPETSGRSKRHKKDDRTKKDK

Query:  ERERSKSRHHKRRKQKAKEKQAEERSSSPVQLSKFLAREKDDGARRSAVSGKKILLKLDKSKEDKAEENKRNELLKFLNSSFD
        ERERS+S HHKRRK KAKEKQ EE SSSPVQLSKFLAREKDDG RRSAVSGKKILLKLDKSKEDKAEENKRNELLKFLNSSFD
Subjt:  ERERSKSRHHKRRKQKAKEKQAEERSSSPVQLSKFLAREKDDGARRSAVSGKKILLKLDKSKEDKAEENKRNELLKFLNSSFD

TrEMBL top hits

e value

%identity

Alignment

A0A1S3BQ85 peptidyl-prolyl cis-trans isomerase G

2.8e-57

88.52

Show/hide

Query:  MAASSSSAT---SDSSSSSSRRRQRRRTRREKDRDTLRIRKKSRSHSKRRRRHRRSSSDSLSS--SESDDSRSDSSSQSEPETSGRSKRHKKDDRTKKDK
        MAASSS+ T   SDSSSSSSRRR+RRRTRREKDRDTLRIRKKSRSHSKR RRHRRSSSDSLSS  SESD +RS+SSS+SEPETS RSKRHKK+DRTKKDK
Subjt:  MAASSSSAT---SDSSSSSSRRRQRRRTRREKDRDTLRIRKKSRSHSKRRRRHRRSSSDSLSS--SESDDSRSDSSSQSEPETSGRSKRHKKDDRTKKDK

Query:  ERERSKSRHHKRRKQKAKEKQAEERSSSPVQLSKFLAREKDDGARRSAVSGKKILLKLDKSKEDKAEENKRNELLKFLNSSFD
        ERERS+S HHKRRK KAKEKQ EE SSSPVQLSKFLAREKDDG RRSAVSGKKILLKLDKSKEDKAEENKRNELLKFLNSSFD
Subjt:  ERERSKSRHHKRRKQKAKEKQAEERSSSPVQLSKFLAREKDDGARRSAVSGKKILLKLDKSKEDKAEENKRNELLKFLNSSFD

A0A6J1C3K8 serine/arginine-rich splicing factor 11

1.2e-60

91.26

Show/hide

Query:  MAASSSSA---TSDSSSSSSRRRQRRRTRREKDRDTLRIRKKSRSHSKRRRRHRRSSSDSLSS--SESDDSRSDSSSQSEPETSGRSKRHKKDDRTKKDK
        MAASSSSA   TSDSSSSSSRRR+RRR+RR+KDRD LRIRKKSRSHSKRRRRHRRSSSDSLSS  SES+ SRS SSSQSEPETSGRSKRHKK+DRTKKDK
Subjt:  MAASSSSA---TSDSSSSSSRRRQRRRTRREKDRDTLRIRKKSRSHSKRRRRHRRSSSDSLSS--SESDDSRSDSSSQSEPETSGRSKRHKKDDRTKKDK

Query:  ERERSKSRHHKRRKQKAKEKQAEERSSSPVQLSKFLAREKDDGARRSAVSGKKILLKLDKSKEDKAEENKRNELLKFLNSSFD
        ERERSKS HHKRRK KAKEKQ EERSSSPVQLSKFLAREKDDGARRSAVSGKKILLKLDKSKEDKAEENKRNELLKFLNSSFD
Subjt:  ERERSKSRHHKRRKQKAKEKQAEERSSSPVQLSKFLAREKDDGARRSAVSGKKILLKLDKSKEDKAEENKRNELLKFLNSSFD

A0A6J1EV15 serine/arginine-rich splicing factor 11 isoform X1

4.4e-55

89.07

Show/hide

Query:  MAASSSSA---TSDSSSSSSRRRQRRRTRREKDRDTLRIRKKSRSHSKRRRRHRRSSSDSLSS--SESDDSRSDSSSQSEPETSGRSKRHKKDDRTKKDK
        MAASSSSA   TSDSSSSSSRRR+RRRTRREKDR+ LRIRKKSRSHSKRRRRHRRSSS+SLSS  SESD SRS SSSQSEPE SGRSKRHKK+D TK  K
Subjt:  MAASSSSA---TSDSSSSSSRRRQRRRTRREKDRDTLRIRKKSRSHSKRRRRHRRSSSDSLSS--SESDDSRSDSSSQSEPETSGRSKRHKKDDRTKKDK

Query:  ERERSKSRHHKRRKQKAKEKQAEERSSSPVQLSKFLAREKDDGARRSAVSGKKILLKLDKSKEDKAEENKRNELLKFLNSSFD
        ERERSKSRHHKRRK KAKEKQ EERSSSPVQLSKFLARE DDG RRSAVSGKKILLKLDKSKEDKAEENKRNELLKFLNSSFD
Subjt:  ERERSKSRHHKRRKQKAKEKQAEERSSSPVQLSKFLAREKDDGARRSAVSGKKILLKLDKSKEDKAEENKRNELLKFLNSSFD

A0A6J1HZG5 probable splicing factor, arginine/serine-rich 7 isoform X1

3.4e-55

89.07

Show/hide

Query:  MAASSSSA---TSDSSSSSSRRRQRRRTRREKDRDTLRIRKKSRSHSKRRRRHRRSSSDSLSS--SESDDSRSDSSSQSEPETSGRSKRHKKDDRTKKDK
        MAASSSSA   TSDSSSSSSRRR+RRRTRREKDRD LRIRKKSRSHSKRRRRHRRSSS+SLSS  SESD SRS SSSQSEPE SGRSKRHKK+D TK  K
Subjt:  MAASSSSA---TSDSSSSSSRRRQRRRTRREKDRDTLRIRKKSRSHSKRRRRHRRSSSDSLSS--SESDDSRSDSSSQSEPETSGRSKRHKKDDRTKKDK

Query:  ERERSKSRHHKRRKQKAKEKQAEERSSSPVQLSKFLAREKDDGARRSAVSGKKILLKLDKSKEDKAEENKRNELLKFLNSSFD
        ERERSKS+HHKRRK KAKEKQ EERSSSPVQLSKFLARE DDG RRSAVSGKKILLKLDKSKEDKAEENKRNELLKFLNSSFD
Subjt:  ERERSKSRHHKRRKQKAKEKQAEERSSSPVQLSKFLAREKDDGARRSAVSGKKILLKLDKSKEDKAEENKRNELLKFLNSSFD

A0A6J1I4D4 NKAP family protein isoform X2

1.3e-54

88.52

Show/hide

Query:  MAASSSSA---TSDSSSSSSRRRQRRRTRREKDRDTLRIRKKSRSHSKRRRRHRRSSSDSLSS--SESDDSRSDSSSQSEPETSGRSKRHKKDDRTKKDK
        MAASSSSA   TSDSSSSSSRRR+RRRTRREKDRD LRIRKKSRSHSKRRRRHRRSSS+SLSS  SESD SRS SSSQSEPE SGRSKRHKK+D TKK  
Subjt:  MAASSSSA---TSDSSSSSSRRRQRRRTRREKDRDTLRIRKKSRSHSKRRRRHRRSSSDSLSS--SESDDSRSDSSSQSEPETSGRSKRHKKDDRTKKDK

Query:  ERERSKSRHHKRRKQKAKEKQAEERSSSPVQLSKFLAREKDDGARRSAVSGKKILLKLDKSKEDKAEENKRNELLKFLNSSFD
         RERSKS+HHKRRK KAKEKQ EERSSSPVQLSKFLARE DDG RRSAVSGKKILLKLDKSKEDKAEENKRNELLKFLNSSFD
Subjt:  ERERSKSRHHKRRKQKAKEKQAEERSSSPVQLSKFLAREKDDGARRSAVSGKKILLKLDKSKEDKAEENKRNELLKFLNSSFD

SwissProt top hits	e value	%identity	Alignment
No hits found

Arabidopsis top hits

e value

%identity

Alignment

AT5G27860.1 unknown protein

1.2e-33

63.39

Show/hide

Query:  MAASSSSATSDSSSSSS----RRRQRRRTRR-EKDRDTLRIRKKSRSHSKRRRRHRRSSSDSLSSSESDDSRSDSSSQSEPETSGRSKRHKKDDRTKKDK
        MAASSSS++SD SS SS    RR+ RR  RR ++DRD+L++RKKSRS SK+RRR R+ SSDS     SD S SDSSS+S      +S+RHKK ++ KK K
Subjt:  MAASSSSATSDSSSSSS----RRRQRRRTRR-EKDRDTLRIRKKSRSHSKRRRRHRRSSSDSLSSSESDDSRSDSSSQSEPETSGRSKRHKKDDRTKKDK

Query:  ERERSKSRHHKRRKQKAKEKQAEERSSSPVQLSKFLAREKDDGARRSAVSGKKILLKLDKSKEDKAEENKRNELLKFLNSSFD
        ++ERSKS  HKR K + ++K   E SS PV+LSKFL R+KDDG RRSAVSGKKILLK+DKSKEDKA E+KRNELLKFLN+SFD
Subjt:  ERERSKSRHHKRRKQKAKEKQAEERSSSPVQLSKFLAREKDDGARRSAVSGKKILLKLDKSKEDKAEENKRNELLKFLNSSFD

AT5G27860.2 unknown protein

1.2e-33

63.39

Show/hide

Query:  MAASSSSATSDSSSSSS----RRRQRRRTRR-EKDRDTLRIRKKSRSHSKRRRRHRRSSSDSLSSSESDDSRSDSSSQSEPETSGRSKRHKKDDRTKKDK
        MAASSSS++SD SS SS    RR+ RR  RR ++DRD+L++RKKSRS SK+RRR R+ SSDS     SD S SDSSS+S      +S+RHKK ++ KK K
Subjt:  MAASSSSATSDSSSSSS----RRRQRRRTRR-EKDRDTLRIRKKSRSHSKRRRRHRRSSSDSLSSSESDDSRSDSSSQSEPETSGRSKRHKKDDRTKKDK

Query:  ERERSKSRHHKRRKQKAKEKQAEERSSSPVQLSKFLAREKDDGARRSAVSGKKILLKLDKSKEDKAEENKRNELLKFLNSSFD
        ++ERSKS  HKR K + ++K   E SS PV+LSKFL R+KDDG RRSAVSGKKILLK+DKSKEDKA E+KRNELLKFLN+SFD
Subjt:  ERERSKSRHHKRRKQKAKEKQAEERSSSPVQLSKFLAREKDDGARRSAVSGKKILLKLDKSKEDKAEENKRNELLKFLNSSFD

Sequences

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CDS sequence

Show/hide CDS sequence

ATGGCGGCCTCGTCTTCATCGGCGACTTCCGATTCTTCTTCTTCTTCCTCTCGCCGTCGCCAACGCCGTAGAACTCGCCGTGAAAAAGATCGGGACACCCTTAGGATTCG
AAAGAAGTCTCGCTCTCATTCTAAACGCCGCCGCAGGCACCGCCGCTCCTCCTCAGATTCTCTATCTTCATCAGAATCCGATGACTCTCGAAGCGACAGCTCTTCTCAAA
GTGAGCCTGAAACATCTGGTCGTTCTAAGCGGCATAAGAAGGATGATAGAACAAAGAAGGATAAGGAGAGGGAGCGAAGTAAGAGTCGTCACCATAAAAGGCGCAAGCAG
AAAGCTAAAGAGAAACAGGCAGAAGAGAGAAGTAGCAGCCCTGTGCAGCTGTCTAAGTTTCTAGCACGGGAGAAGGATGATGGTGCTCGGCGGAGTGCTGTCTCTGGCAA
AAAGATATTGTTGAAACTTGATAAATCGAAGGAAGACAAAGCCGAGGAAAACAAAAGAAATGAGTTGCTGAAATTCTTGAACTCTAGCTTTGACTAA

mRNA sequence

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Protein sequence

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MAASSSSATSDSSSSSSRRRQRRRTRREKDRDTLRIRKKSRSHSKRRRRHRRSSSDSLSSSESDDSRSDSSSQSEPETSGRSKRHKKDDRTKKDKERERSKSRHHKRRKQ
KAKEKQAEERSSSPVQLSKFLAREKDDGARRSAVSGKKILLKLDKSKEDKAEENKRNELLKFLNSSFD

Sed0011876 (gene) of Chayote v1 genome