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Sed0011900 (gene) of Chayote v1 genome

Gene IDSed0011900
OrganismSechium edule (Chayote v1)
Descriptiontranscription factor AS1
Genome locationLG02:44649900..44653330
RNA-Seq ExpressionSed0011900
SyntenySed0011900
Gene Ontology termsGO:0006351 - transcription, DNA-templated (biological process)
GO:0010338 - leaf formation (biological process)
GO:0005634 - nucleus (cellular component)
InterPro domainsIPR031055 - Protein rough sheath 2 /ASYMMETRIC LEAVES1


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAG6596407.1 E3 ubiquitin-protein ligase PRT6, partial [Cucurbita argyrosperma subsp. sororia]2.3e-7071.23Show/hide
Query:  MATSNGAFLPSDSSTPPASLPPWLSAA---------SPSVTLTLS-------SPIPWLQQ-DRIPATTPLVMPNLAP----PPCGGSRFASELAECCREL
        MATSNG FL +DSSTPP SLPPWLS +         SPSVTLTLS       SPIPWLQQ +RIP T PLV+ N+AP    P CGGS FASEL ECCREL
Subjt:  MATSNGAFLPSDSSTPPASLPPWLSAA---------SPSVTLTLS-------SPIPWLQQ-DRIPATTPLVMPNLAP----PPCGGSRFASELAECCREL

Query:  EEGHRAWAAHKKEAMWRLRRQELQLESEKAARIRRKMEEVQGKVKALREEQKAALERMEAEYKEQLGGLRKDAEAKEHKLAHQWAAKHLSLTKFLDHMAC
        +EGHRAWA+HKKE  WRLRRQELQLESEKA+RIR+KMEEV+GKVKA+REE+K ALER+EAEYKEQL GLRKDAEAKE KLA QWAAKHLSLTKFL+HM C
Subjt:  EEGHRAWAAHKKEAMWRLRRQELQLESEKAARIRRKMEEVQGKVKALREEQKAALERMEAEYKEQLGGLRKDAEAKEHKLAHQWAAKHLSLTKFLDHMAC

Query:  TTRIADSTGRPLASPEPPL
         T+I++S+GR     E PL
Subjt:  TTRIADSTGRPLASPEPPL

XP_008442545.1 PREDICTED: transcription factor AS1 [Cucumis melo]1.8e-7073.81Show/hide
Query:  MATSNGAFLPSDSSTPPASLPPWLSAA---------SPSVTLTLSS-------PIPWLQQ-DRIPATTPLVMPNLAP----PPCGGSRFASELAECCREL
        MATSNG FL +DSSTPP SLPPWLS +         SPSVTLTLSS       PIPWLQQ DR+P   PLV+ NLAP    P CGGS FASEL ECCREL
Subjt:  MATSNGAFLPSDSSTPPASLPPWLSAA---------SPSVTLTLSS-------PIPWLQQ-DRIPATTPLVMPNLAP----PPCGGSRFASELAECCREL

Query:  EEGHRAWAAHKKEAMWRLRRQELQLESEKAARIRRKMEEVQGKVKALREEQKAALERMEAEYKEQLGGLRKDAEAKEHKLAHQWAAKHLSLTKFLDHMAC
        +EGHRAWAAHKKE  WRLRRQELQLESEKA+RIR+KMEEV+GKVKALREE+K ALER+EAEYKEQL G RKDAEAKE KLA QWAAKH+SLTKFL+HM C
Subjt:  EEGHRAWAAHKKEAMWRLRRQELQLESEKAARIRRKMEEVQGKVKALREEQKAALERMEAEYKEQLGGLRKDAEAKEHKLAHQWAAKHLSLTKFLDHMAC

Query:  TTRIADSTGR
         TRIA+S+GR
Subjt:  TTRIADSTGR

XP_022948252.1 transcription factor AS1-like [Cucurbita moschata]5.1e-7072.86Show/hide
Query:  MATSNGAFLPSDSSTPPASLPPWLSAA---------SPSVTLTLS-------SPIPWLQQ-DRIPATTPLVMPNLAP----PPCGGSRFASELAECCREL
        MATSNG FL +DSSTPP SLPPWLS +         SPSVTLTLS       SPIPWLQQ +RIP T PLV+ N+AP    P CGGS FASEL ECCREL
Subjt:  MATSNGAFLPSDSSTPPASLPPWLSAA---------SPSVTLTLS-------SPIPWLQQ-DRIPATTPLVMPNLAP----PPCGGSRFASELAECCREL

Query:  EEGHRAWAAHKKEAMWRLRRQELQLESEKAARIRRKMEEVQGKVKALREEQKAALERMEAEYKEQLGGLRKDAEAKEHKLAHQWAAKHLSLTKFLDHMAC
        +EGHRAWA+HKKE  WRLRRQELQLESEKA+RIR+KMEEV+GKVKA+REE+K ALER+EAEYKEQL GLRKDAEAKE KLA QWAAKHLSLTKFL+HM C
Subjt:  EEGHRAWAAHKKEAMWRLRRQELQLESEKAARIRRKMEEVQGKVKALREEQKAALERMEAEYKEQLGGLRKDAEAKEHKLAHQWAAKHLSLTKFLDHMAC

Query:  TTRIADSTGR
         T+I++S+GR
Subjt:  TTRIADSTGR

XP_022982614.1 transcription factor AS1-like [Cucurbita maxima]3.0e-7074.29Show/hide
Query:  MATSNGAFLPSDSSTPPASLPPWLSAA---------SPSVTLTLS-------SPIPWLQQ-DRIPATTPLVMPNLAP----PPCGGSRFASELAECCREL
        MATSNG FL +DSSTPP SLPPWLS +         SPSVTLTLS       SPIPWLQQ +RIP   PLV+ NLAP      CGGS FASEL ECCREL
Subjt:  MATSNGAFLPSDSSTPPASLPPWLSAA---------SPSVTLTLS-------SPIPWLQQ-DRIPATTPLVMPNLAP----PPCGGSRFASELAECCREL

Query:  EEGHRAWAAHKKEAMWRLRRQELQLESEKAARIRRKMEEVQGKVKALREEQKAALERMEAEYKEQLGGLRKDAEAKEHKLAHQWAAKHLSLTKFLDHMAC
        +EGHRAWAAHKKE  WRLRRQELQLESEKA+RIR+KMEEV+GKVKALREE+K+ LER+EAEYKEQL GLRKDAEAKE KLA QWAAKHLSLTKFL+HM C
Subjt:  EEGHRAWAAHKKEAMWRLRRQELQLESEKAARIRRKMEEVQGKVKALREEQKAALERMEAEYKEQLGGLRKDAEAKEHKLAHQWAAKHLSLTKFLDHMAC

Query:  TTRIADSTGR
         TRIADS+GR
Subjt:  TTRIADSTGR

XP_038903104.1 transcription factor AS1-like [Benincasa hispida]7.9e-7174.76Show/hide
Query:  MATSNGAFLPSDSSTPPASLPPWLSAA---------SPSVTLTLS-------SPIPWLQQ-DRIPATTPLVMPNLAP----PPCGGSRFASELAECCREL
        MATSNG FL +DSSTPP SLPPWLS +         SPSVTLTLS       SPIPWLQQ +RIP   PLV+ NLAP    P CGGS FASEL ECCREL
Subjt:  MATSNGAFLPSDSSTPPASLPPWLSAA---------SPSVTLTLS-------SPIPWLQQ-DRIPATTPLVMPNLAP----PPCGGSRFASELAECCREL

Query:  EEGHRAWAAHKKEAMWRLRRQELQLESEKAARIRRKMEEVQGKVKALREEQKAALERMEAEYKEQLGGLRKDAEAKEHKLAHQWAAKHLSLTKFLDHMAC
         EGHRAWAAHKKE  WRLRRQELQLESEKA+RIR+KMEEV+GKVKALREE+K ALER+EAEYKEQL GLRKDAEAKE KLA QWAAKHLSLTKFL+HM C
Subjt:  EEGHRAWAAHKKEAMWRLRRQELQLESEKAARIRRKMEEVQGKVKALREEQKAALERMEAEYKEQLGGLRKDAEAKEHKLAHQWAAKHLSLTKFLDHMAC

Query:  TTRIADSTGR
         TRIA+S+GR
Subjt:  TTRIADSTGR

TrEMBL top hitse value%identityAlignment
A0A1S3B5G1 transcription factor AS18.5e-7173.81Show/hide
Query:  MATSNGAFLPSDSSTPPASLPPWLSAA---------SPSVTLTLSS-------PIPWLQQ-DRIPATTPLVMPNLAP----PPCGGSRFASELAECCREL
        MATSNG FL +DSSTPP SLPPWLS +         SPSVTLTLSS       PIPWLQQ DR+P   PLV+ NLAP    P CGGS FASEL ECCREL
Subjt:  MATSNGAFLPSDSSTPPASLPPWLSAA---------SPSVTLTLSS-------PIPWLQQ-DRIPATTPLVMPNLAP----PPCGGSRFASELAECCREL

Query:  EEGHRAWAAHKKEAMWRLRRQELQLESEKAARIRRKMEEVQGKVKALREEQKAALERMEAEYKEQLGGLRKDAEAKEHKLAHQWAAKHLSLTKFLDHMAC
        +EGHRAWAAHKKE  WRLRRQELQLESEKA+RIR+KMEEV+GKVKALREE+K ALER+EAEYKEQL G RKDAEAKE KLA QWAAKH+SLTKFL+HM C
Subjt:  EEGHRAWAAHKKEAMWRLRRQELQLESEKAARIRRKMEEVQGKVKALREEQKAALERMEAEYKEQLGGLRKDAEAKEHKLAHQWAAKHLSLTKFLDHMAC

Query:  TTRIADSTGR
         TRIA+S+GR
Subjt:  TTRIADSTGR

A0A5D3DN74 Transcription factor AS18.5e-7173.81Show/hide
Query:  MATSNGAFLPSDSSTPPASLPPWLSAA---------SPSVTLTLSS-------PIPWLQQ-DRIPATTPLVMPNLAP----PPCGGSRFASELAECCREL
        MATSNG FL +DSSTPP SLPPWLS +         SPSVTLTLSS       PIPWLQQ DR+P   PLV+ NLAP    P CGGS FASEL ECCREL
Subjt:  MATSNGAFLPSDSSTPPASLPPWLSAA---------SPSVTLTLSS-------PIPWLQQ-DRIPATTPLVMPNLAP----PPCGGSRFASELAECCREL

Query:  EEGHRAWAAHKKEAMWRLRRQELQLESEKAARIRRKMEEVQGKVKALREEQKAALERMEAEYKEQLGGLRKDAEAKEHKLAHQWAAKHLSLTKFLDHMAC
        +EGHRAWAAHKKE  WRLRRQELQLESEKA+RIR+KMEEV+GKVKALREE+K ALER+EAEYKEQL G RKDAEAKE KLA QWAAKH+SLTKFL+HM C
Subjt:  EEGHRAWAAHKKEAMWRLRRQELQLESEKAARIRRKMEEVQGKVKALREEQKAALERMEAEYKEQLGGLRKDAEAKEHKLAHQWAAKHLSLTKFLDHMAC

Query:  TTRIADSTGR
         TRIA+S+GR
Subjt:  TTRIADSTGR

A0A6J1G8P0 transcription factor AS1-like2.5e-7072.86Show/hide
Query:  MATSNGAFLPSDSSTPPASLPPWLSAA---------SPSVTLTLS-------SPIPWLQQ-DRIPATTPLVMPNLAP----PPCGGSRFASELAECCREL
        MATSNG FL +DSSTPP SLPPWLS +         SPSVTLTLS       SPIPWLQQ +RIP T PLV+ N+AP    P CGGS FASEL ECCREL
Subjt:  MATSNGAFLPSDSSTPPASLPPWLSAA---------SPSVTLTLS-------SPIPWLQQ-DRIPATTPLVMPNLAP----PPCGGSRFASELAECCREL

Query:  EEGHRAWAAHKKEAMWRLRRQELQLESEKAARIRRKMEEVQGKVKALREEQKAALERMEAEYKEQLGGLRKDAEAKEHKLAHQWAAKHLSLTKFLDHMAC
        +EGHRAWA+HKKE  WRLRRQELQLESEKA+RIR+KMEEV+GKVKA+REE+K ALER+EAEYKEQL GLRKDAEAKE KLA QWAAKHLSLTKFL+HM C
Subjt:  EEGHRAWAAHKKEAMWRLRRQELQLESEKAARIRRKMEEVQGKVKALREEQKAALERMEAEYKEQLGGLRKDAEAKEHKLAHQWAAKHLSLTKFLDHMAC

Query:  TTRIADSTGR
         T+I++S+GR
Subjt:  TTRIADSTGR

A0A6J1I2B9 transcription factor AS1-like2.5e-7072.86Show/hide
Query:  MATSNGAFLPSDSSTPPASLPPWLSAA---------SPSVTLTLS-------SPIPWLQQ-DRIPATTPLVMPNLAP----PPCGGSRFASELAECCREL
        MATSNG FL +DSSTPP SLPPWLS +         SPSVTLTLS       SPIPWLQQ +RIP T PLV+ N+AP    P CGGS FASEL ECCREL
Subjt:  MATSNGAFLPSDSSTPPASLPPWLSAA---------SPSVTLTLS-------SPIPWLQQ-DRIPATTPLVMPNLAP----PPCGGSRFASELAECCREL

Query:  EEGHRAWAAHKKEAMWRLRRQELQLESEKAARIRRKMEEVQGKVKALREEQKAALERMEAEYKEQLGGLRKDAEAKEHKLAHQWAAKHLSLTKFLDHMAC
        +EGHRAWA+HKKE  WRLRRQELQLESEKA+RIR+KMEEV+GKVKA+REE+K ALER+EAEYKEQL GLRKDAEAKE KLA QWAAKHLSLTKFL+HM C
Subjt:  EEGHRAWAAHKKEAMWRLRRQELQLESEKAARIRRKMEEVQGKVKALREEQKAALERMEAEYKEQLGGLRKDAEAKEHKLAHQWAAKHLSLTKFLDHMAC

Query:  TTRIADSTGR
         T+I++S+GR
Subjt:  TTRIADSTGR

A0A6J1J530 transcription factor AS1-like1.5e-7074.29Show/hide
Query:  MATSNGAFLPSDSSTPPASLPPWLSAA---------SPSVTLTLS-------SPIPWLQQ-DRIPATTPLVMPNLAP----PPCGGSRFASELAECCREL
        MATSNG FL +DSSTPP SLPPWLS +         SPSVTLTLS       SPIPWLQQ +RIP   PLV+ NLAP      CGGS FASEL ECCREL
Subjt:  MATSNGAFLPSDSSTPPASLPPWLSAA---------SPSVTLTLS-------SPIPWLQQ-DRIPATTPLVMPNLAP----PPCGGSRFASELAECCREL

Query:  EEGHRAWAAHKKEAMWRLRRQELQLESEKAARIRRKMEEVQGKVKALREEQKAALERMEAEYKEQLGGLRKDAEAKEHKLAHQWAAKHLSLTKFLDHMAC
        +EGHRAWAAHKKE  WRLRRQELQLESEKA+RIR+KMEEV+GKVKALREE+K+ LER+EAEYKEQL GLRKDAEAKE KLA QWAAKHLSLTKFL+HM C
Subjt:  EEGHRAWAAHKKEAMWRLRRQELQLESEKAARIRRKMEEVQGKVKALREEQKAALERMEAEYKEQLGGLRKDAEAKEHKLAHQWAAKHLSLTKFLDHMAC

Query:  TTRIADSTGR
         TRIADS+GR
Subjt:  TTRIADSTGR

SwissProt top hitse value%identityAlignment
O80931 Transcription factor AS11.0e-4455.07Show/hide
Query:  MATSNGAFLPSDSSTPPAS--LPPWLS---------AASPSVTLTLS----------SPIPWLQQDRIPATT----PLVMPNLAPPPCGGSR--FASELA
        MA SNG FL S+    P +  +PPWL+         A  PSVTLTLS           PIPWLQQ +          LV+ ++ P   G S   F SEL 
Subjt:  MATSNGAFLPSDSSTPPAS--LPPWLS---------AASPSVTLTLS----------SPIPWLQQDRIPATT----PLVMPNLAPPPCGGSR--FASELA

Query:  ECCRELEEGHRAWAAHKKEAMWRLRRQELQLESEKAARIRRKMEEVQGKVKALREEQKAALERMEAEYKEQLGGLRKDAEAKEHKLAHQWAAKHLSLTKF
        ECCRELEEGHRAWA HKKEA WRLRR ELQLESEK  R R KMEE++ K+KALREEQK A+E++E EY+EQL GLR+DAEAK+ KLA QW ++H+ LTKF
Subjt:  ECCRELEEGHRAWAAHKKEAMWRLRRQELQLESEKAARIRRKMEEVQGKVKALREEQKAALERMEAEYKEQLGGLRKDAEAKEHKLAHQWAAKHLSLTKF

Query:  LD-HMAC
        L+  M C
Subjt:  LD-HMAC

Q94IB1 Protein rough sheath 2 homolog3.5e-3753.76Show/hide
Query:  LPPWL-----SAASPSVTLTLSSPIPWLQQDRIPATTPLVMPNLAPPPC-----GGSRFASELAECCRELEEGHRAWAAHKKEAMWRLRRQELQLESEKA
        LPPW+     S++SPSVTL+L+S           A  P      APPP      GG    +EL ECCRE+EEG RAWAAH+KEA WR++R E+QLE+E+A
Subjt:  LPPWL-----SAASPSVTLTLSSPIPWLQQDRIPATTPLVMPNLAPPPC-----GGSRFASELAECCRELEEGHRAWAAHKKEAMWRLRRQELQLESEKA

Query:  ARIRRKMEEVQGKVKALREEQKAALERMEAEYKEQLGGLRKDAEAKEHKLAHQWAAKHLSLTKFLDHMACTTR
         R R   EE + K++ALREEQ AA+ER+EAEY+E++ GLR+DAEAKE K+A QWAAKH  L KFLD +A   R
Subjt:  ARIRRKMEEVQGKVKALREEQKAALERMEAEYKEQLGGLRKDAEAKEHKLAHQWAAKHLSLTKFLDHMACTTR

Q9S7B2 Protein rough sheath 25.0e-2840.57Show/hide
Query:  AFLPSDSSTPPASLPPWLSA-------------------ASPSVTLTLSS---------PIPWLQQDRIPATTPLVMPN------LAPPPCG--GSRFAS
        A  PS        LPPWLS+                    SPSVTL+L+S         P PW+         P   P+       APP       +  +
Subjt:  AFLPSDSSTPPASLPPWLSA-------------------ASPSVTLTLSS---------PIPWLQQDRIPATTPLVMPN------LAPPPCG--GSRFAS

Query:  ELAECCRELEEGHRAWAAHKKEAMWRLRRQELQLESEKAARIRRKMEEVQGKVKALREEQKAALERMEAEYKEQLGGLRKDAEAKEHKLAHQWAAKHLSL
        ELAECCRELEEG RAWAAH++EA WRL+R E QLE E+  R R   EE + K++ +R EQ AA ER+E +++E++  LR+DA+ KE K+A QWAAKH  +
Subjt:  ELAECCRELEEGHRAWAAHKKEAMWRLRRQELQLESEKAARIRRKMEEVQGKVKALREEQKAALERMEAEYKEQLGGLRKDAEAKEHKLAHQWAAKHLSL

Query:  TKFLDHMACTTR
         KF++ M   +R
Subjt:  TKFLDHMACTTR

Arabidopsis top hitse value%identityAlignment
AT2G37630.1 myb-like HTH transcriptional regulator family protein7.2e-4655.07Show/hide
Query:  MATSNGAFLPSDSSTPPAS--LPPWLS---------AASPSVTLTLS----------SPIPWLQQDRIPATT----PLVMPNLAPPPCGGSR--FASELA
        MA SNG FL S+    P +  +PPWL+         A  PSVTLTLS           PIPWLQQ +          LV+ ++ P   G S   F SEL 
Subjt:  MATSNGAFLPSDSSTPPAS--LPPWLS---------AASPSVTLTLS----------SPIPWLQQDRIPATT----PLVMPNLAPPPCGGSR--FASELA

Query:  ECCRELEEGHRAWAAHKKEAMWRLRRQELQLESEKAARIRRKMEEVQGKVKALREEQKAALERMEAEYKEQLGGLRKDAEAKEHKLAHQWAAKHLSLTKF
        ECCRELEEGHRAWA HKKEA WRLRR ELQLESEK  R R KMEE++ K+KALREEQK A+E++E EY+EQL GLR+DAEAK+ KLA QW ++H+ LTKF
Subjt:  ECCRELEEGHRAWAAHKKEAMWRLRRQELQLESEKAARIRRKMEEVQGKVKALREEQKAALERMEAEYKEQLGGLRKDAEAKEHKLAHQWAAKHLSLTKF

Query:  LD-HMAC
        L+  M C
Subjt:  LD-HMAC


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGGCAACTTCCAATGGGGCCTTTCTTCCATCAGACTCGTCAACCCCACCAGCATCTCTTCCTCCATGGCTCTCGGCGGCGTCCCCCTCGGTCACCTTAACCCTCTCCTC
CCCCATCCCCTGGCTGCAGCAAGACAGAATTCCAGCAACCACGCCTCTTGTGATGCCCAATTTGGCTCCTCCACCCTGCGGCGGAAGCCGCTTCGCCTCCGAGCTCGCCG
AGTGCTGTCGGGAGCTCGAGGAGGGGCACCGGGCGTGGGCCGCTCACAAGAAGGAGGCAATGTGGAGGTTGAGGAGGCAGGAGCTGCAATTGGAGTCGGAAAAGGCGGCT
CGAATTCGACGCAAGATGGAGGAGGTTCAAGGGAAGGTGAAGGCTCTTAGAGAGGAACAGAAGGCTGCATTGGAGAGGATGGAAGCTGAGTATAAGGAGCAGTTGGGTGG
GTTGAGGAAAGACGCAGAGGCTAAAGAACACAAGTTGGCTCACCAATGGGCTGCAAAACACTTGAGCCTCACCAAGTTTCTTGACCACATGGCTTGCACAACTAGAATTG
CTGACTCCACTGGAAGACCCCTAGCCAGCCCCGAGCCCCCCTTGCTCGCCCAGTTCGCCTAG
mRNA sequenceShow/hide mRNA sequence
ATGGCAACTTCCAATGGGGCCTTTCTTCCATCAGACTCGTCAACCCCACCAGCATCTCTTCCTCCATGGCTCTCGGCGGCGTCCCCCTCGGTCACCTTAACCCTCTCCTC
CCCCATCCCCTGGCTGCAGCAAGACAGAATTCCAGCAACCACGCCTCTTGTGATGCCCAATTTGGCTCCTCCACCCTGCGGCGGAAGCCGCTTCGCCTCCGAGCTCGCCG
AGTGCTGTCGGGAGCTCGAGGAGGGGCACCGGGCGTGGGCCGCTCACAAGAAGGAGGCAATGTGGAGGTTGAGGAGGCAGGAGCTGCAATTGGAGTCGGAAAAGGCGGCT
CGAATTCGACGCAAGATGGAGGAGGTTCAAGGGAAGGTGAAGGCTCTTAGAGAGGAACAGAAGGCTGCATTGGAGAGGATGGAAGCTGAGTATAAGGAGCAGTTGGGTGG
GTTGAGGAAAGACGCAGAGGCTAAAGAACACAAGTTGGCTCACCAATGGGCTGCAAAACACTTGAGCCTCACCAAGTTTCTTGACCACATGGCTTGCACAACTAGAATTG
CTGACTCCACTGGAAGACCCCTAGCCAGCCCCGAGCCCCCCTTGCTCGCCCAGTTCGCCTAG
Protein sequenceShow/hide protein sequence
MATSNGAFLPSDSSTPPASLPPWLSAASPSVTLTLSSPIPWLQQDRIPATTPLVMPNLAPPPCGGSRFASELAECCRELEEGHRAWAAHKKEAMWRLRRQELQLESEKAA
RIRRKMEEVQGKVKALREEQKAALERMEAEYKEQLGGLRKDAEAKEHKLAHQWAAKHLSLTKFLDHMACTTRIADSTGRPLASPEPPLLAQFA