; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; CuGenDBv2

Sed0011914 (gene) of Chayote v1 genome

Gene IDSed0011914
OrganismSechium edule (Chayote v1)
Descriptionroot phototropism protein 3
Genome locationLG13:2436292..2437223
RNA-Seq ExpressionSed0011914
SyntenySed0011914
Gene Ontology termsGO:0016567 - protein ubiquitination (biological process)
GO:0016020 - membrane (cellular component)
InterPro domainsIPR027356 - NPH3 domain
IPR029959 - Root phototropism protein 3-like
IPR043454 - NPH3/RPT2-like family


Homology Show/hide homology
GenBank top hitse value%identityAlignment
XP_004137156.1 root phototropism protein 3 isoform X1 [Cucumis sativus]5.2e-5188.03Show/hide
Query:  SIPNWNDLKNSSPSRNQFVPPDWWFEDVSILRMDHFVRVITSIKVKGMRFELIDSSIMHYLSKWLPGLVTDSTNAGNEGSTSTTSNMSGGSNSWKGGLHL
        S P WNDLK+SSPSRNQ VPPDWWFEDVSILR+DHFVRVIT+IKVKGMRFELI SSIMHY SKWLPGLVTD+TNAG+EGSTSTTSN S GSNSWKGGLH+
Subjt:  SIPNWNDLKNSSPSRNQFVPPDWWFEDVSILRMDHFVRVITSIKVKGMRFELIDSSIMHYLSKWLPGLVTDSTNAGNEGSTSTTSNMSGGSNSWKGGLHL

Query:  IVAGNKEDHSANQAKDQ
        IVAGNKEDHSA QAKDQ
Subjt:  IVAGNKEDHSANQAKDQ

XP_016902943.1 PREDICTED: root phototropism protein 3 [Cucumis melo]5.2e-5188.03Show/hide
Query:  SIPNWNDLKNSSPSRNQFVPPDWWFEDVSILRMDHFVRVITSIKVKGMRFELIDSSIMHYLSKWLPGLVTDSTNAGNEGSTSTTSNMSGGSNSWKGGLHL
        S P WNDLK+SSPSRNQ VPPDWWFEDVSILR+DHFVRVIT+IKVKGMRFELI SSIMHY SKWLPGLVTD+TNAG+EGSTSTTSN S GSNSWKGGLH+
Subjt:  SIPNWNDLKNSSPSRNQFVPPDWWFEDVSILRMDHFVRVITSIKVKGMRFELIDSSIMHYLSKWLPGLVTDSTNAGNEGSTSTTSNMSGGSNSWKGGLHL

Query:  IVAGNKEDHSANQAKDQ
        IVAGNKEDHSA QAKDQ
Subjt:  IVAGNKEDHSANQAKDQ

XP_031740285.1 root phototropism protein 3 isoform X2 [Cucumis sativus]5.2e-5188.03Show/hide
Query:  SIPNWNDLKNSSPSRNQFVPPDWWFEDVSILRMDHFVRVITSIKVKGMRFELIDSSIMHYLSKWLPGLVTDSTNAGNEGSTSTTSNMSGGSNSWKGGLHL
        S P WNDLK+SSPSRNQ VPPDWWFEDVSILR+DHFVRVIT+IKVKGMRFELI SSIMHY SKWLPGLVTD+TNAG+EGSTSTTSN S GSNSWKGGLH+
Subjt:  SIPNWNDLKNSSPSRNQFVPPDWWFEDVSILRMDHFVRVITSIKVKGMRFELIDSSIMHYLSKWLPGLVTDSTNAGNEGSTSTTSNMSGGSNSWKGGLHL

Query:  IVAGNKEDHSANQAKDQ
        IVAGNKEDHSA QAKDQ
Subjt:  IVAGNKEDHSANQAKDQ

XP_038905136.1 root phototropism protein 3-like isoform X1 [Benincasa hispida]2.0e-5087.18Show/hide
Query:  SIPNWNDLKNSSPSRNQFVPPDWWFEDVSILRMDHFVRVITSIKVKGMRFELIDSSIMHYLSKWLPGLVTDSTNAGNEGSTSTTSNMSGGSNSWKGGLHL
        S P WNDLK+SSPSRNQ VPPDWWFEDVSILR+DHFVRVIT+IKVKGMRFELI SSIMHY SKWLPGLVTD+TNAG+EGSTSTTSN S GS+SWKGGLH+
Subjt:  SIPNWNDLKNSSPSRNQFVPPDWWFEDVSILRMDHFVRVITSIKVKGMRFELIDSSIMHYLSKWLPGLVTDSTNAGNEGSTSTTSNMSGGSNSWKGGLHL

Query:  IVAGNKEDHSANQAKDQ
        IVAGNKEDHSA QAKDQ
Subjt:  IVAGNKEDHSANQAKDQ

XP_038905138.1 root phototropism protein 3-like isoform X2 [Benincasa hispida]2.0e-5087.18Show/hide
Query:  SIPNWNDLKNSSPSRNQFVPPDWWFEDVSILRMDHFVRVITSIKVKGMRFELIDSSIMHYLSKWLPGLVTDSTNAGNEGSTSTTSNMSGGSNSWKGGLHL
        S P WNDLK+SSPSRNQ VPPDWWFEDVSILR+DHFVRVIT+IKVKGMRFELI SSIMHY SKWLPGLVTD+TNAG+EGSTSTTSN S GS+SWKGGLH+
Subjt:  SIPNWNDLKNSSPSRNQFVPPDWWFEDVSILRMDHFVRVITSIKVKGMRFELIDSSIMHYLSKWLPGLVTDSTNAGNEGSTSTTSNMSGGSNSWKGGLHL

Query:  IVAGNKEDHSANQAKDQ
        IVAGNKEDHSA QAKDQ
Subjt:  IVAGNKEDHSANQAKDQ

TrEMBL top hitse value%identityAlignment
A0A0A0KZC3 Uncharacterized protein2.5e-5188.03Show/hide
Query:  SIPNWNDLKNSSPSRNQFVPPDWWFEDVSILRMDHFVRVITSIKVKGMRFELIDSSIMHYLSKWLPGLVTDSTNAGNEGSTSTTSNMSGGSNSWKGGLHL
        S P WNDLK+SSPSRNQ VPPDWWFEDVSILR+DHFVRVIT+IKVKGMRFELI SSIMHY SKWLPGLVTD+TNAG+EGSTSTTSN S GSNSWKGGLH+
Subjt:  SIPNWNDLKNSSPSRNQFVPPDWWFEDVSILRMDHFVRVITSIKVKGMRFELIDSSIMHYLSKWLPGLVTDSTNAGNEGSTSTTSNMSGGSNSWKGGLHL

Query:  IVAGNKEDHSANQAKDQ
        IVAGNKEDHSA QAKDQ
Subjt:  IVAGNKEDHSANQAKDQ

A0A1S4E3Y8 root phototropism protein 32.5e-5188.03Show/hide
Query:  SIPNWNDLKNSSPSRNQFVPPDWWFEDVSILRMDHFVRVITSIKVKGMRFELIDSSIMHYLSKWLPGLVTDSTNAGNEGSTSTTSNMSGGSNSWKGGLHL
        S P WNDLK+SSPSRNQ VPPDWWFEDVSILR+DHFVRVIT+IKVKGMRFELI SSIMHY SKWLPGLVTD+TNAG+EGSTSTTSN S GSNSWKGGLH+
Subjt:  SIPNWNDLKNSSPSRNQFVPPDWWFEDVSILRMDHFVRVITSIKVKGMRFELIDSSIMHYLSKWLPGLVTDSTNAGNEGSTSTTSNMSGGSNSWKGGLHL

Query:  IVAGNKEDHSANQAKDQ
        IVAGNKEDHSA QAKDQ
Subjt:  IVAGNKEDHSANQAKDQ

A0A5D3CB29 Root phototropism protein 32.5e-5188.03Show/hide
Query:  SIPNWNDLKNSSPSRNQFVPPDWWFEDVSILRMDHFVRVITSIKVKGMRFELIDSSIMHYLSKWLPGLVTDSTNAGNEGSTSTTSNMSGGSNSWKGGLHL
        S P WNDLK+SSPSRNQ VPPDWWFEDVSILR+DHFVRVIT+IKVKGMRFELI SSIMHY SKWLPGLVTD+TNAG+EGSTSTTSN S GSNSWKGGLH+
Subjt:  SIPNWNDLKNSSPSRNQFVPPDWWFEDVSILRMDHFVRVITSIKVKGMRFELIDSSIMHYLSKWLPGLVTDSTNAGNEGSTSTTSNMSGGSNSWKGGLHL

Query:  IVAGNKEDHSANQAKDQ
        IVAGNKEDHSA QAKDQ
Subjt:  IVAGNKEDHSANQAKDQ

A0A6J1D4V9 root phototropism protein 3-like1.2e-4884.62Show/hide
Query:  SIPNWNDLKNSSPSRNQFVPPDWWFEDVSILRMDHFVRVITSIKVKGMRFELIDSSIMHYLSKWLPGLVTDSTNAGNEGSTSTTSNMSGGSNSWKGGLHL
        S P WND+K+SSPSRNQ VPPDWWFEDVSILR+DHFVRVIT+IKVKGMRFELI SSIMHY SKWLPGLVTD   AG+EGSTSTTSN S GSNSWKGGLH+
Subjt:  SIPNWNDLKNSSPSRNQFVPPDWWFEDVSILRMDHFVRVITSIKVKGMRFELIDSSIMHYLSKWLPGLVTDSTNAGNEGSTSTTSNMSGGSNSWKGGLHL

Query:  IVAGNKEDHSANQAKDQ
        IVAGNKEDHS  QAKDQ
Subjt:  IVAGNKEDHSANQAKDQ

A0A6J1FW45 root phototropism protein 31.8e-4983.33Show/hide
Query:  RLESIPNWNDLKNSSPSRNQFVPPDWWFEDVSILRMDHFVRVITSIKVKGMRFELIDSSIMHYLSKWLPGLVTDSTNAGNEGSTSTTSNMSGGSNSWKGG
        ++ S P WNDLK+SSPSRNQ VPPDWWFEDVSILR+DHFVRVIT+IKVKGMRFELI SSIMHY SKWLPGLVTD+T+AG+EGSTSTTSN S GSNSWKGG
Subjt:  RLESIPNWNDLKNSSPSRNQFVPPDWWFEDVSILRMDHFVRVITSIKVKGMRFELIDSSIMHYLSKWLPGLVTDSTNAGNEGSTSTTSNMSGGSNSWKGG

Query:  LHLIVAGNKEDHSANQAKDQ
        LH+IVAGNKED S  QAKDQ
Subjt:  LHLIVAGNKEDHSANQAKDQ

SwissProt top hitse value%identityAlignment
Q5KS50 Coleoptile phototropism protein 16.9e-2247.86Show/hide
Query:  PNWN-------DLKNSSPSRNQFVPPDWWFEDVSILRMDHFVRVITSIKVKGMRFELIDSSIMHYLSKWLPGLVTDSTNAGNEGSTSTTSNMSGGSNSWK
        P WN       + K SSPSR    P DWWFEDVS+LR+DHFVRV+T+IKVKGMRF+LI ++I HY SKWLPGL  D+            ++ +G      
Subjt:  PNWN-------DLKNSSPSRNQFVPPDWWFEDVSILRMDHFVRVITSIKVKGMRFELIDSSIMHYLSKWLPGLVTDSTNAGNEGSTSTTSNMSGGSNSWK

Query:  GGLHLIV----AGNKED
        GGLH+++     G K+D
Subjt:  GGLHLIV----AGNKED

Q9C9Z7 BTB/POZ domain-containing protein At3g085701.8e-0643.75Show/hide
Query:  PDWWFEDVSILRMDHFVRVITSIKVKGMRFELIDSSIMHYLSKWLPGL
        P+WW ED+S LR+D++ RV++++   G+R E I +S+MHY  + L G+
Subjt:  PDWWFEDVSILRMDHFVRVITSIKVKGMRFELIDSSIMHYLSKWLPGL

Q9FMF5 Root phototropism protein 31.7e-2852.48Show/hide
Query:  PKMQQVNRLESIPNWNDLKNS----SPSRN---QFVPPDWWFEDVSILRMDHFVRVITSIKVKGMRFELIDSSIMHYLSKWLPGLVTDSTNA--------
        P     N   S P WN+ K+S    SPSRN   Q VPPDWWFEDVSILR+DHFVRVIT+IKVKGMRFEL+ + IMHY  KWLPGL+ +   A        
Subjt:  PKMQQVNRLESIPNWNDLKNS----SPSRN---QFVPPDWWFEDVSILRMDHFVRVITSIKVKGMRFELIDSSIMHYLSKWLPGLVTDSTNA--------

Query:  --------GNEGSTSTTSNMSGGSN--SWKGGLHLIVAGNK
                G+E S S  SN SGGS+   WKGGLH++++  K
Subjt:  --------GNEGSTSTTSNMSGGSN--SWKGGLHLIVAGNK

Q9FYC8 BTB/POZ domain-containing protein At3g448201.6e-0739.06Show/hide
Query:  WNDLKNSSPSRNQFVPPDWWFEDVSILRMDHFVRVITSIKVKGMRFELIDSSIMHYLSKWLPGL
        WN +   +  R+     DWW+ED+S L +D F R+I +++ KG+R E +  ++M+Y  K+LPGL
Subjt:  WNDLKNSSPSRNQFVPPDWWFEDVSILRMDHFVRVITSIKVKGMRFELIDSSIMHYLSKWLPGL

Q9S9Q9 BTB/POZ domain-containing protein At1g304406.9e-0635.44Show/hide
Query:  WNDLKNSSPSRNQFVPPDWWFEDVSILRMDHFVRVITSIKVKGMRFELIDSSIMHYLSKWLPGLVTDSTNAGNEGSTST
        WN +  S+ +R +    DWW+ED S+L    F R+IT ++ +G+R ++I  S+ +Y  K LPGL        + G  ST
Subjt:  WNDLKNSSPSRNQFVPPDWWFEDVSILRMDHFVRVITSIKVKGMRFELIDSSIMHYLSKWLPGLVTDSTNAGNEGSTST

Arabidopsis top hitse value%identityAlignment
AT1G52770.1 Phototropic-responsive NPH3 family protein1.2e-0844.12Show/hide
Query:  SIPNWNDLKNSSPSRNQFVPPDWWFEDVSILRMDHFVRVITSIKVKGMRFELIDSSIMHYLSKWLPGL
        S P    +   SPS +       WF+D  IL +D+FV+ I  IK KG+R +LI S I+HY S+WLP L
Subjt:  SIPNWNDLKNSSPSRNQFVPPDWWFEDVSILRMDHFVRVITSIKVKGMRFELIDSSIMHYLSKWLPGL

AT3G08570.1 Phototropic-responsive NPH3 family protein1.3e-0743.75Show/hide
Query:  PDWWFEDVSILRMDHFVRVITSIKVKGMRFELIDSSIMHYLSKWLPGL
        P+WW ED+S LR+D++ RV++++   G+R E I +S+MHY  + L G+
Subjt:  PDWWFEDVSILRMDHFVRVITSIKVKGMRFELIDSSIMHYLSKWLPGL

AT3G44820.1 Phototropic-responsive NPH3 family protein1.2e-0839.06Show/hide
Query:  WNDLKNSSPSRNQFVPPDWWFEDVSILRMDHFVRVITSIKVKGMRFELIDSSIMHYLSKWLPGL
        WN +   +  R+     DWW+ED+S L +D F R+I +++ KG+R E +  ++M+Y  K+LPGL
Subjt:  WNDLKNSSPSRNQFVPPDWWFEDVSILRMDHFVRVITSIKVKGMRFELIDSSIMHYLSKWLPGL

AT5G64330.1 Phototropic-responsive NPH3 family protein1.2e-2952.48Show/hide
Query:  PKMQQVNRLESIPNWNDLKNS----SPSRN---QFVPPDWWFEDVSILRMDHFVRVITSIKVKGMRFELIDSSIMHYLSKWLPGLVTDSTNA--------
        P     N   S P WN+ K+S    SPSRN   Q VPPDWWFEDVSILR+DHFVRVIT+IKVKGMRFEL+ + IMHY  KWLPGL+ +   A        
Subjt:  PKMQQVNRLESIPNWNDLKNS----SPSRN---QFVPPDWWFEDVSILRMDHFVRVITSIKVKGMRFELIDSSIMHYLSKWLPGLVTDSTNA--------

Query:  --------GNEGSTSTTSNMSGGSN--SWKGGLHLIVAGNK
                G+E S S  SN SGGS+   WKGGLH++++  K
Subjt:  --------GNEGSTSTTSNMSGGSN--SWKGGLHLIVAGNK

AT5G64330.2 Phototropic-responsive NPH3 family protein1.2e-2952.48Show/hide
Query:  PKMQQVNRLESIPNWNDLKNS----SPSRN---QFVPPDWWFEDVSILRMDHFVRVITSIKVKGMRFELIDSSIMHYLSKWLPGLVTDSTNA--------
        P     N   S P WN+ K+S    SPSRN   Q VPPDWWFEDVSILR+DHFVRVIT+IKVKGMRFEL+ + IMHY  KWLPGL+ +   A        
Subjt:  PKMQQVNRLESIPNWNDLKNS----SPSRN---QFVPPDWWFEDVSILRMDHFVRVITSIKVKGMRFELIDSSIMHYLSKWLPGLVTDSTNA--------

Query:  --------GNEGSTSTTSNMSGGSN--SWKGGLHLIVAGNK
                G+E S S  SN SGGS+   WKGGLH++++  K
Subjt:  --------GNEGSTSTTSNMSGGSN--SWKGGLHLIVAGNK


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGGAGGGACTCTATAGTTGTGTTGAAAAGTTGCGAGAAGCTCTCGCCGTGGGCGGAGAATCTACAAATCGTCCGAAGATGCAGCAAGTCAATCGCTTGGAAAGCATTCC
GAATTGGAATGATTTGAAGAATTCAAGCCCTAGCAGGAATCAGTTTGTTCCTCCTGATTGGTGGTTTGAGGATGTGTCTATCTTGAGGATGGATCATTTTGTTAGAGTAA
TCACATCAATCAAAGTAAAGGGAATGAGGTTTGAACTGATTGATTCTTCGATTATGCATTATTTGTCGAAATGGCTTCCCGGTTTGGTTACGGATTCGACAAATGCTGGC
AATGAAGGAAGTACGAGCACGACTAGTAACATGAGCGGTGGCAGCAACAGTTGGAAAGGAGGGCTTCATTTGATTGTGGCTGGTAACAAGGAAGATCATTCGGCGAATCA
GGCGAAAGATCAATGA
mRNA sequenceShow/hide mRNA sequence
ATGGAGGGACTCTATAGTTGTGTTGAAAAGTTGCGAGAAGCTCTCGCCGTGGGCGGAGAATCTACAAATCGTCCGAAGATGCAGCAAGTCAATCGCTTGGAAAGCATTCC
GAATTGGAATGATTTGAAGAATTCAAGCCCTAGCAGGAATCAGTTTGTTCCTCCTGATTGGTGGTTTGAGGATGTGTCTATCTTGAGGATGGATCATTTTGTTAGAGTAA
TCACATCAATCAAAGTAAAGGGAATGAGGTTTGAACTGATTGATTCTTCGATTATGCATTATTTGTCGAAATGGCTTCCCGGTTTGGTTACGGATTCGACAAATGCTGGC
AATGAAGGAAGTACGAGCACGACTAGTAACATGAGCGGTGGCAGCAACAGTTGGAAAGGAGGGCTTCATTTGATTGTGGCTGGTAACAAGGAAGATCATTCGGCGAATCA
GGCGAAAGATCAATGA
Protein sequenceShow/hide protein sequence
MEGLYSCVEKLREALAVGGESTNRPKMQQVNRLESIPNWNDLKNSSPSRNQFVPPDWWFEDVSILRMDHFVRVITSIKVKGMRFELIDSSIMHYLSKWLPGLVTDSTNAG
NEGSTSTTSNMSGGSNSWKGGLHLIVAGNKEDHSANQAKDQ