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Sed0011921 (gene) of Chayote v1 genome

Gene IDSed0011921
OrganismSechium edule (Chayote v1)
DescriptionSmall ubiquitin-related modifier
Genome locationLG05:32721816..32723442
RNA-Seq ExpressionSed0011921
SyntenySed0011921
Gene Ontology termsGO:0005634 - nucleus (cellular component)
GO:0005515 - protein binding (molecular function)
InterPro domainsIPR000626 - Ubiquitin-like domain
IPR022617 - Rad60/SUMO-like domain
IPR029071 - Ubiquitin-like domain superfamily


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAA0061648.1 small ubiquitin-related modifier 1 [Cucumis melo var. makuwa]6.4e-2763.11Show/hide
Query:  TPINGNRGKETTR----EPDSSYVNIKVNGQDGSEVFFKVLKKTQLRNLMNKYCQRQGLDRNEIAFLLDGHQITGTQTADELGLEDKDEIDAMKHHGGGG
        T +N    +ETTR    +P+S YVN+KVNGQDGSEV+F++ KK++L  LM  YC+RQ L+ + IAFL+DGH I GTQTA+ELGLED DEIDAMKHH GGG
Subjt:  TPINGNRGKETTR----EPDSSYVNIKVNGQDGSEVFFKVLKKTQLRNLMNKYCQRQGLDRNEIAFLLDGHQITGTQTADELGLEDKDEIDAMKHHGGGG

Query:  GGS
        GG+
Subjt:  GGS

XP_022969393.1 small ubiquitin-related modifier 1-like isoform X2 [Cucurbita maxima]8.4e-2770.59Show/hide
Query:  EPDSSYVNIKVNGQDGSEVFFKVLKKTQLRNLMNKYCQRQGLDRNEIAFLLDGHQITGTQTADELGLEDKDEIDAMKHHGGGGGG
        +P ++YVN+KVNGQDGSEV+F++ K+TQL  LM  YC+RQ L+   IAFLLDGH I G QTADELG+ED DEIDAMKHHGGGGGG
Subjt:  EPDSSYVNIKVNGQDGSEVFFKVLKKTQLRNLMNKYCQRQGLDRNEIAFLLDGHQITGTQTADELGLEDKDEIDAMKHHGGGGGG

XP_023553983.1 small ubiquitin-related modifier 1-like [Cucurbita pepo subsp. pepo]1.3e-2765.35Show/hide
Query:  TPINGNRGKETTR---EPDSSYVNIKVNGQDGSEVFFKVLKKTQLRNLMNKYCQRQGLDRNEIAFLLDGHQITGTQTADELGLEDKDEIDAMKHHGGGGG
        T ++ NR   T +   EP S YVN+KVNGQDGSEV+F++ K+TQL  LM  YC+RQ L+   IAFLLDGH I G QTADELG+ED DEIDAMKHHGGGGG
Subjt:  TPINGNRGKETTR---EPDSSYVNIKVNGQDGSEVFFKVLKKTQLRNLMNKYCQRQGLDRNEIAFLLDGHQITGTQTADELGLEDKDEIDAMKHHGGGGG

Query:  G
        G
Subjt:  G

XP_031743856.1 small ubiquitin-related modifier 1-like [Cucumis sativus]1.1e-2663.37Show/hide
Query:  TPINGNRGKETTR----EPDSSYVNIKVNGQDGSEVFFKVLKKTQLRNLMNKYCQRQGLDRNEIAFLLDGHQITGTQTADELGLEDKDEIDAMKHHGGGG
        T +N    +ETTR    +P+S YVN+KVNGQDGS+V+F++ KKT++  LM+ YCQRQ L+ + IAFL+DGH I GTQTA+ELGLED DEIDAMKHH GGG
Subjt:  TPINGNRGKETTR----EPDSSYVNIKVNGQDGSEVFFKVLKKTQLRNLMNKYCQRQGLDRNEIAFLLDGHQITGTQTADELGLEDKDEIDAMKHHGGGG

Query:  G
        G
Subjt:  G

XP_038888534.1 small ubiquitin-related modifier 1-like isoform X1 [Benincasa hispida]2.2e-2762.5Show/hide
Query:  TPINGNRGKETT-----REPDSSYVNIKVNGQDGSEVFFKVLKKTQLRNLMNKYCQRQGLDRNEIAFLLDGHQITGTQTADELGLEDKDEIDAMKHHGGG
        +P N N   E T      +PDS YVN+KVNGQDGSEV+F++ K+TQL+ LM  YC+RQGL+   IAFLLDGH I GTQTA+EL +ED DEIDAMKHHGGG
Subjt:  TPINGNRGKETT-----REPDSSYVNIKVNGQDGSEVFFKVLKKTQLRNLMNKYCQRQGLDRNEIAFLLDGHQITGTQTADELGLEDKDEIDAMKHHGGG

Query:  GGGS
          G+
Subjt:  GGGS

TrEMBL top hitse value%identityAlignment
A0A5A7V249 Small ubiquitin-related modifier 13.1e-2763.11Show/hide
Query:  TPINGNRGKETTR----EPDSSYVNIKVNGQDGSEVFFKVLKKTQLRNLMNKYCQRQGLDRNEIAFLLDGHQITGTQTADELGLEDKDEIDAMKHHGGGG
        T +N    +ETTR    +P+S YVN+KVNGQDGSEV+F++ KK++L  LM  YC+RQ L+ + IAFL+DGH I GTQTA+ELGLED DEIDAMKHH GGG
Subjt:  TPINGNRGKETTR----EPDSSYVNIKVNGQDGSEVFFKVLKKTQLRNLMNKYCQRQGLDRNEIAFLLDGHQITGTQTADELGLEDKDEIDAMKHHGGGG

Query:  GGS
        GG+
Subjt:  GGS

A0A6J1D1W9 small ubiquitin-related modifier 1-like9.1e-2765.31Show/hide
Query:  NRGKETTR----EPDSSYVNIKVNGQDGSEVFFKVLKKTQLRNLMNKYCQRQGLDRNEIAFLLDGHQITGTQTADELGLEDKDEIDAMKHHGGGGGGS
        ++ +E+TR    EPD  YVNIKVNGQDGSEV+F+V KKTQL+ LM  YCQRQG D+  +AFLLDGH ITG QT ++L L+D DEIDAM HHGGGGG +
Subjt:  NRGKETTR----EPDSSYVNIKVNGQDGSEVFFKVLKKTQLRNLMNKYCQRQGLDRNEIAFLLDGHQITGTQTADELGLEDKDEIDAMKHHGGGGGGS

A0A6J1GLF8 Small ubiquitin-related modifier7.7e-2671.6Show/hide
Query:  SYVNIKVNGQDGSEVFFKVLKKTQLRNLMNKYCQRQGLDRNEIAFLLDGHQITGTQTADELGLEDKDEIDAMKHHGGGGGG
        +YVN+KVNGQDGSEV+F++ K+TQL  LM  YC+RQ L+   IAFLLDGH I G QTADELG+ED D+IDAMKHHGGGGGG
Subjt:  SYVNIKVNGQDGSEVFFKVLKKTQLRNLMNKYCQRQGLDRNEIAFLLDGHQITGTQTADELGLEDKDEIDAMKHHGGGGGG

A0A6J1I0U8 small ubiquitin-related modifier 1-like isoform X24.1e-2770.59Show/hide
Query:  EPDSSYVNIKVNGQDGSEVFFKVLKKTQLRNLMNKYCQRQGLDRNEIAFLLDGHQITGTQTADELGLEDKDEIDAMKHHGGGGGG
        +P ++YVN+KVNGQDGSEV+F++ K+TQL  LM  YC+RQ L+   IAFLLDGH I G QTADELG+ED DEIDAMKHHGGGGGG
Subjt:  EPDSSYVNIKVNGQDGSEVFFKVLKKTQLRNLMNKYCQRQGLDRNEIAFLLDGHQITGTQTADELGLEDKDEIDAMKHHGGGGGG

A0A6P6B2R0 Small ubiquitin-related modifier5.1e-2254.81Show/hide
Query:  MSGTPINGNRGKETTREP--DSSYVNIKVNGQDGSEVFFKVLKKTQLRNLMNKYCQRQGLDRNEIAFLLDGHQITGTQTADELGLEDKDEIDAMKHHGGG
        MS T   G  G+E  ++P   S+++N+KV GQDG+EVFF++ + TQL+ LMN YC RQ +D N IAFL DG ++ G QT DEL +ED DEIDAM H  GG
Subjt:  MSGTPINGNRGKETTREP--DSSYVNIKVNGQDGSEVFFKVLKKTQLRNLMNKYCQRQGLDRNEIAFLLDGHQITGTQTADELGLEDKDEIDAMKHHGGG

Query:  GGGS
        G GS
Subjt:  GGGS

SwissProt top hitse value%identityAlignment
O13351 Ubiquitin-like protein pmt3/smt34.5e-1543.16Show/hide
Query:  TPINGNRGKETTREPDSSYVNIKVNGQDGSEVFFKVLKKTQLRNLMNKYCQRQGLDRNEIAFLLDGHQITGTQTADELGLEDKDEIDAMKHHGGG
        TP  G+  ++  + P + ++N+KV GQD +EVFFK+ K T+   LM  YC RQG   N + FL+DG +I   QT  EL +ED D+I+A+    GG
Subjt:  TPINGNRGKETTREPDSSYVNIKVNGQDGSEVFFKVLKKTQLRNLMNKYCQRQGLDRNEIAFLLDGHQITGTQTADELGLEDKDEIDAMKHHGGG

P55852 Small ubiquitin-related modifier 11.9e-2150Show/hide
Query:  INGNRGKETTREPDSSYVNIKVNGQDGSEVFFKVLKKTQLRNLMNKYCQRQGLDRNEIAFLLDGHQITGTQTADELGLEDKDEIDAMKHHGGGGGG
        ++ N+ ++       +++N+KV GQDG+EVFF++ + TQL+ LMN YC RQ +D N IAFL DG ++   QT DEL +ED DEIDAM H  GG GG
Subjt:  INGNRGKETTREPDSSYVNIKVNGQDGSEVFFKVLKKTQLRNLMNKYCQRQGLDRNEIAFLLDGHQITGTQTADELGLEDKDEIDAMKHHGGGGGG

P55857 Small ubiquitin-related modifier 13.2e-2157.32Show/hide
Query:  EPDSSYVNIKVNGQDGSEVFFKVLKKTQLRNLMNKYCQRQGLDRNEIAFLLDGHQITGTQTADELGLEDKDEIDAMKHHGGG
        E   +++N+KV GQDG+EVFF++ + TQL+ LMN YC RQ +D N IAFL DG ++ G QT DEL +ED DEIDAM H  GG
Subjt:  EPDSSYVNIKVNGQDGSEVFFKVLKKTQLRNLMNKYCQRQGLDRNEIAFLLDGHQITGTQTADELGLEDKDEIDAMKHHGGG

Q7ZTK7 Small ubiquitin-related modifier 2-A6.5e-1442.22Show/hide
Query:  NRGKETTREPDSSYVNIKVNGQDGSEVFFKVLKKTQLRNLMNKYCQRQGLDRNEIAFLLDGHQITGTQTADELGLEDKDEIDAMKHHGGG
        ++ KE  +  ++ ++N+KV GQDGS V FK+ ++T L  LM  YC+RQGL   +I F  DG  I  T T  +L +ED+D ID  +   GG
Subjt:  NRGKETTREPDSSYVNIKVNGQDGSEVFFKVLKKTQLRNLMNKYCQRQGLDRNEIAFLLDGHQITGTQTADELGLEDKDEIDAMKHHGGG

Q9FLP6 Small ubiquitin-related modifier 28.4e-2253Show/hide
Query:  MSGTPINGNRGKETTREPD-SSYVNIKVNGQDGSEVFFKVLKKTQLRNLMNKYCQRQGLDRNEIAFLLDGHQITGTQTADELGLEDKDEIDAMKHHGGGG
        MS TP       E  ++PD  +++N+KV GQDG+EVFF++ + TQL+ LMN YC RQ +D N IAFL DG ++   QT DEL +ED DEIDAM H  GGG
Subjt:  MSGTPINGNRGKETTREPD-SSYVNIKVNGQDGSEVFFKVLKKTQLRNLMNKYCQRQGLDRNEIAFLLDGHQITGTQTADELGLEDKDEIDAMKHHGGGG

Arabidopsis top hitse value%identityAlignment
AT4G26840.1 small ubiquitin-like modifier 11.3e-2250Show/hide
Query:  INGNRGKETTREPDSSYVNIKVNGQDGSEVFFKVLKKTQLRNLMNKYCQRQGLDRNEIAFLLDGHQITGTQTADELGLEDKDEIDAMKHHGGGGGG
        ++ N+ ++       +++N+KV GQDG+EVFF++ + TQL+ LMN YC RQ +D N IAFL DG ++   QT DEL +ED DEIDAM H  GG GG
Subjt:  INGNRGKETTREPDSSYVNIKVNGQDGSEVFFKVLKKTQLRNLMNKYCQRQGLDRNEIAFLLDGHQITGTQTADELGLEDKDEIDAMKHHGGGGGG

AT5G55160.1 small ubiquitin-like modifier 26.0e-2353Show/hide
Query:  MSGTPINGNRGKETTREPD-SSYVNIKVNGQDGSEVFFKVLKKTQLRNLMNKYCQRQGLDRNEIAFLLDGHQITGTQTADELGLEDKDEIDAMKHHGGGG
        MS TP       E  ++PD  +++N+KV GQDG+EVFF++ + TQL+ LMN YC RQ +D N IAFL DG ++   QT DEL +ED DEIDAM H  GGG
Subjt:  MSGTPINGNRGKETTREPD-SSYVNIKVNGQDGSEVFFKVLKKTQLRNLMNKYCQRQGLDRNEIAFLLDGHQITGTQTADELGLEDKDEIDAMKHHGGGG

AT5G55160.2 small ubiquitin-like modifier 23.6e-2046.9Show/hide
Query:  MSGTPINGNRGKETTREPD-SSYVNIKVNGQ-------------DGSEVFFKVLKKTQLRNLMNKYCQRQGLDRNEIAFLLDGHQITGTQTADELGLEDK
        MS TP       E  ++PD  +++N+KV GQ             DG+EVFF++ + TQL+ LMN YC RQ +D N IAFL DG ++   QT DEL +ED 
Subjt:  MSGTPINGNRGKETTREPD-SSYVNIKVNGQ-------------DGSEVFFKVLKKTQLRNLMNKYCQRQGLDRNEIAFLLDGHQITGTQTADELGLEDK

Query:  DEIDAMKHHGGGG
        DEIDAM H  GGG
Subjt:  DEIDAMKHHGGGG

AT5G55170.1 small ubiquitin-like modifier 39.6e-1343.9Show/hide
Query:  EPDSSYVNIKVNGQDGSEVFFKVLKKTQLRNLMNKYCQRQGLDRNEIAFLLDGHQITGTQTADELGLEDKDEIDAMKHHGGG
        +   ++V +KV  QDG EV FK  K   L+ LM  YC R+GL  +  AF+ +G +I G +T DEL +ED D IDA +   GG
Subjt:  EPDSSYVNIKVNGQDGSEVFFKVLKKTQLRNLMNKYCQRQGLDRNEIAFLLDGHQITGTQTADELGLEDKDEIDAMKHHGGG

AT5G55856.1 Ubiquitin-like superfamily protein3.6e-1240.51Show/hide
Query:  SSYVNIKVNGQDGSEVFFKVLKKTQLRNLMNKYCQRQGLDRNEIAFLLDGHQITGTQTADELGLEDKDEIDAMKHHGGG
        SS++ +KV  QD   V+F++ +  +LR +M+ Y  + G++ + + FL DG++I   QT +ELGLED+DEI+A     GG
Subjt:  SSYVNIKVNGQDGSEVFFKVLKKTQLRNLMNKYCQRQGLDRNEIAFLLDGHQITGTQTADELGLEDKDEIDAMKHHGGG


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGTCGGGCACGCCGATCAACGGCAACCGGGGCAAAGAGACGACCCGAGAACCCGACTCGAGCTACGTCAACATCAAGGTGAACGGACAGGATGGGAGTGAAGTTTTTTT
CAAGGTTTTGAAGAAAACGCAGCTGAGGAATCTGATGAACAAGTACTGTCAACGGCAAGGTTTGGATCGGAACGAGATTGCATTTCTGCTCGACGGCCACCAGATCACCG
GCACCCAAACGGCCGATGAGTTGGGGTTGGAGGACAAGGATGAAATTGATGCCATGAAACACCATGGAGGTGGAGGCGGCGGCAGCGACGACGACGACATAGCAAAGTGA
mRNA sequenceShow/hide mRNA sequence
CATTCATCATTTTCTCTCTGTCGTTTTACCCTTTTGCTTCATTTTCTCTCTGTTCTTTTACTCTCTTTTTTTTCCATTGAGATAAATAATCCGACGAACAACAATGTCGG
GCACGCCGATCAACGGCAACCGGGGCAAAGAGACGACCCGAGAACCCGACTCGAGCTACGTCAACATCAAGGTGAACGGACAGGATGGGAGTGAAGTTTTTTTCAAGGTT
TTGAAGAAAACGCAGCTGAGGAATCTGATGAACAAGTACTGTCAACGGCAAGGTTTGGATCGGAACGAGATTGCATTTCTGCTCGACGGCCACCAGATCACCGGCACCCA
AACGGCCGATGAGTTGGGGTTGGAGGACAAGGATGAAATTGATGCCATGAAACACCATGGAGGTGGAGGCGGCGGCAGCGACGACGACGACATAGCAAAGTGAGGGGTTT
GGTGAGAAATGAGTTCAAACAATTGAATCCCAAATTTCATGTTTTGTTTGTTTGGATGAACACCATTTGTCAAAAATGTATATTTTTAGTTCTTGGAAGTTGTAGACTTT
GGATTATTTTGGTGTTTATACATTCTCTTCTAATGATCTAATTTAGC
Protein sequenceShow/hide protein sequence
MSGTPINGNRGKETTREPDSSYVNIKVNGQDGSEVFFKVLKKTQLRNLMNKYCQRQGLDRNEIAFLLDGHQITGTQTADELGLEDKDEIDAMKHHGGGGGGSDDDDIAK