; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; CuGenDBv2

Sed0011935 (gene) of Chayote v1 genome

Gene IDSed0011935
OrganismSechium edule (Chayote v1)
DescriptionEF hand calcium-binding protein family
Genome locationLG04:35797363..35797671
RNA-Seq ExpressionSed0011935
SyntenySed0011935
Gene Ontology termsGO:0005509 - calcium ion binding (molecular function)
InterPro domainsIPR002048 - EF-hand domain
IPR011992 - EF-hand domain pair
IPR018247 - EF-Hand 1, calcium-binding site


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAA0040005.1 calmodulin-like protein 7 [Cucumis melo var. makuwa]3.6e-2463.54Show/hide
Query:  SSFFTNFHIKISSKPFFQRTLINDKKLPSFTTFSHIELLFKLLDSNGDGKITPKELSRFLHRLGYMKMNAAKKADEMVKGMDSNHDGFINVDEFFE
        S F T FH  I+SKPFFQ++L N++KLPSFTT +H +LLF LLDS+GDGKI+ KELS+FL+RLGY K+    +A+EMVK MDS+ DGFI +DEF E
Subjt:  SSFFTNFHIKISSKPFFQRTLINDKKLPSFTTFSHIELLFKLLDSNGDGKITPKELSRFLHRLGYMKMNAAKKADEMVKGMDSNHDGFINVDEFFE

XP_004153117.1 calmodulin-beta [Cucumis sativus]8.7e-2664.71Show/hide
Query:  MFFSSLSSFFTNFHIKISSKPFFQRTLINDKKLPSFTTFSHIELLFKLLDSNGDGKITPKELSRFLHRLGYMKMNAAKKADEMVKGMDSNHDGFINVDEF
        MF  + S F T FH  ISSKPFFQ++L N++KLPSFTTF+H +LLF LLDS+GDGKI+ KELS+FL+RLGY K+ A  +A+EMVK MDS+ DGFI +DEF
Subjt:  MFFSSLSSFFTNFHIKISSKPFFQRTLINDKKLPSFTTFSHIELLFKLLDSNGDGKITPKELSRFLHRLGYMKMNAAKKADEMVKGMDSNHDGFINVDEF

Query:  FE
         E
Subjt:  FE

XP_007134898.1 hypothetical protein PHAVU_010G085100g [Phaseolus vulgaris]1.1e-0952.78Show/hide
Query:  SFTTFSHIEL------LFKLLDSNGDGKITPKELSRFLHRLGYMKMNAAKKADEMVKGMDSNHDGFINVDEF
        S ++F H+EL      +FKL+DSNGDGKI+  ELS  L  LGY K  AAK+A+ MV+ +D N DGF+++DEF
Subjt:  SFTTFSHIEL------LFKLLDSNGDGKITPKELSRFLHRLGYMKMNAAKKADEMVKGMDSNHDGFINVDEF

XP_008460131.1 PREDICTED: calmodulin-like protein 7 [Cucumis melo]2.5e-2564.58Show/hide
Query:  SSFFTNFHIKISSKPFFQRTLINDKKLPSFTTFSHIELLFKLLDSNGDGKITPKELSRFLHRLGYMKMNAAKKADEMVKGMDSNHDGFINVDEFFE
        S F T FH  I+SKPFFQ++L N++KLPSFTTF+H +LLF +LDS GDGKI+ KELS+FL+RLGY K+ A  +A+EMVK MDS+ DGFI +DEF E
Subjt:  SSFFTNFHIKISSKPFFQRTLINDKKLPSFTTFSHIELLFKLLDSNGDGKITPKELSRFLHRLGYMKMNAAKKADEMVKGMDSNHDGFINVDEFFE

XP_021826132.1 calmodulin-like [Prunus avium]8.7e-1045.78Show/hide
Query:  QRTLINDKKLPSFTTFSHIEL------LFKLLDSNGDGKITPKELSRFLHRLGYMKMNAAKKADEMVKGMDSNHDGFINVDEF
        QR L +   +P+ ++F+ +E+      +F+++DSNGDGKI+P ELS  L  LGY K  AAK+A+ +V+ MD N DGFI+++EF
Subjt:  QRTLINDKKLPSFTTFSHIEL------LFKLLDSNGDGKITPKELSRFLHRLGYMKMNAAKKADEMVKGMDSNHDGFINVDEF

TrEMBL top hitse value%identityAlignment
A0A0A0K8Z4 Uncharacterized protein4.2e-2664.71Show/hide
Query:  MFFSSLSSFFTNFHIKISSKPFFQRTLINDKKLPSFTTFSHIELLFKLLDSNGDGKITPKELSRFLHRLGYMKMNAAKKADEMVKGMDSNHDGFINVDEF
        MF  + S F T FH  ISSKPFFQ++L N++KLPSFTTF+H +LLF LLDS+GDGKI+ KELS+FL+RLGY K+ A  +A+EMVK MDS+ DGFI +DEF
Subjt:  MFFSSLSSFFTNFHIKISSKPFFQRTLINDKKLPSFTTFSHIELLFKLLDSNGDGKITPKELSRFLHRLGYMKMNAAKKADEMVKGMDSNHDGFINVDEF

Query:  FE
         E
Subjt:  FE

A0A1S3CBX8 calmodulin-like protein 71.2e-2564.58Show/hide
Query:  SSFFTNFHIKISSKPFFQRTLINDKKLPSFTTFSHIELLFKLLDSNGDGKITPKELSRFLHRLGYMKMNAAKKADEMVKGMDSNHDGFINVDEFFE
        S F T FH  I+SKPFFQ++L N++KLPSFTTF+H +LLF +LDS GDGKI+ KELS+FL+RLGY K+ A  +A+EMVK MDS+ DGFI +DEF E
Subjt:  SSFFTNFHIKISSKPFFQRTLINDKKLPSFTTFSHIELLFKLLDSNGDGKITPKELSRFLHRLGYMKMNAAKKADEMVKGMDSNHDGFINVDEFFE

A0A371H272 Putative calcium-binding protein CML25 (Fragment)5.5e-1046.07Show/hide
Query:  FFQRTLINDKKLPSF----TTFSHIEL------LFKLLDSNGDGKITPKELSRFLHRLGYMKMNAAKKADEMVKGMDSNHDGFINVDEF
        F++R   N K   S+    ++F H+EL      +FKL+D+NGDGKI+  ELS  L  LGY K  AAK+A+ MV+ +D N DGF+++DEF
Subjt:  FFQRTLINDKKLPSF----TTFSHIEL------LFKLLDSNGDGKITPKELSRFLHRLGYMKMNAAKKADEMVKGMDSNHDGFINVDEF

A0A5A7TEW8 Calmodulin-like protein 71.8e-2463.54Show/hide
Query:  SSFFTNFHIKISSKPFFQRTLINDKKLPSFTTFSHIELLFKLLDSNGDGKITPKELSRFLHRLGYMKMNAAKKADEMVKGMDSNHDGFINVDEFFE
        S F T FH  I+SKPFFQ++L N++KLPSFTT +H +LLF LLDS+GDGKI+ KELS+FL+RLGY K+    +A+EMVK MDS+ DGFI +DEF E
Subjt:  SSFFTNFHIKISSKPFFQRTLINDKKLPSFTTFSHIELLFKLLDSNGDGKITPKELSRFLHRLGYMKMNAAKKADEMVKGMDSNHDGFINVDEFFE

A0A6P5TGC8 calmodulin-like4.2e-1045.78Show/hide
Query:  QRTLINDKKLPSFTTFSHIEL------LFKLLDSNGDGKITPKELSRFLHRLGYMKMNAAKKADEMVKGMDSNHDGFINVDEF
        QR L +   +P+ ++F+ +E+      +F+++DSNGDGKI+P ELS  L  LGY K  AAK+A+ +V+ MD N DGFI+++EF
Subjt:  QRTLINDKKLPSFTTFSHIEL------LFKLLDSNGDGKITPKELSRFLHRLGYMKMNAAKKADEMVKGMDSNHDGFINVDEF

SwissProt top hitse value%identityAlignment
P23286 Calmodulin3.9e-0537.14Show/hide
Query:  KKLPSFTTFSHIELLFKLLDSNGDGKITPKELSRFLHRLGYMKMNAAKKADEMVKGMDSNHDGFINVDEF
        +K+    + + I   FK+ D NGDGKI+  EL   L  +G    +A    D+M+K  D+N+DG I++ EF
Subjt:  KKLPSFTTFSHIELLFKLLDSNGDGKITPKELSRFLHRLGYMKMNAAKKADEMVKGMDSNHDGFINVDEF

Q6ATB2 Probable GTP diphosphokinase CRSH2, chloroplastic6.1e-0641.67Show/hide
Query:  HIELLFKLLDSNGDGKITPKELSRFLHRLGYMKMNAAKKADEMVKGMDSNHDGFINVDEF
        +IE  F+LLD NGDG+I+ +EL+  +  LG       K A+E+++ +D N+DG ++ DEF
Subjt:  HIELLFKLLDSNGDGKITPKELSRFLHRLGYMKMNAAKKADEMVKGMDSNHDGFINVDEF

Q75IS2 Probable GTP diphosphokinase CRSH3, chloroplastic1.8e-0537.88Show/hide
Query:  SFTTFSHIELLFKLLDSNGDGKITPKELSRFLHRLGYMKMNAAKKADEMVKGMDSNHDGFINVDEF
        S  T  ++E  F+LLD NGDG+I+ +EL+  +  LG         A+E+++ +D+N DG ++ DEF
Subjt:  SFTTFSHIELLFKLLDSNGDGKITPKELSRFLHRLGYMKMNAAKKADEMVKGMDSNHDGFINVDEF

Q84R11 Probable GTP diphosphokinase CRSH, chloroplastic3.9e-0540.54Show/hide
Query:  INDKKLPSF-TTFSHIELLFKLLDSNGDGKITPKELSRFLHRLGYMKMNAAKKADEMVKGMDSNHDGFINVDEF
        I+  K  SF TT +  + +F LLD NGDG I+ +EL   +  LG       + A+EM++ +DSN DG ++ DEF
Subjt:  INDKKLPSF-TTFSHIELLFKLLDSNGDGKITPKELSRFLHRLGYMKMNAAKKADEMVKGMDSNHDGFINVDEF

Q9LNE7 Calmodulin-like protein 73.0e-0539.68Show/hide
Query:  SHIELLFKLLDSNGDGKITPKELSRFLHRLGYMKMNAAKKADEMVKGMDSNHDGFINVDEFFE
        + ++ +F++ D NGDG IT KELS  L  LG    +  K+  +M++ +D N DG +++DEF E
Subjt:  SHIELLFKLLDSNGDGKITPKELSRFLHRLGYMKMNAAKKADEMVKGMDSNHDGFINVDEFFE

Arabidopsis top hitse value%identityAlignment
AT1G05990.1 EF hand calcium-binding protein family2.1e-0639.68Show/hide
Query:  SHIELLFKLLDSNGDGKITPKELSRFLHRLGYMKMNAAKKADEMVKGMDSNHDGFINVDEFFE
        + ++ +F++ D NGDG IT KELS  L  LG    +  K+  +M++ +D N DG +++DEF E
Subjt:  SHIELLFKLLDSNGDGKITPKELSRFLHRLGYMKMNAAKKADEMVKGMDSNHDGFINVDEFFE

AT1G24620.1 EF hand calcium-binding protein family1.1e-0536.36Show/hide
Query:  TTFSHIELLFKLLDSNGDGKITPKELSRFLHRLGYMKMNAAKKADEMVKGMDSNHDGFINVDEFFE
        T    +E +FK  D NGDGKI+ KEL   +  LG+      ++ ++ +  +D   DG+IN +EF E
Subjt:  TTFSHIELLFKLLDSNGDGKITPKELSRFLHRLGYMKMNAAKKADEMVKGMDSNHDGFINVDEFFE

AT2G43290.1 Calcium-binding EF-hand family protein4.8e-0637.7Show/hide
Query:  SHIELLFKLLDSNGDGKITPKELSRFLHRLGYMKMNAAKKADEMVKGMDSNHDGFINVDEF
        S ++ +F++ D NGDG+IT +EL+  L  LG    +  K   +M+  +D+N DG +++DEF
Subjt:  SHIELLFKLLDSNGDGKITPKELSRFLHRLGYMKMNAAKKADEMVKGMDSNHDGFINVDEF

AT3G17470.1 Ca2+-activated RelA/spot homolog2.8e-0640.54Show/hide
Query:  INDKKLPSF-TTFSHIELLFKLLDSNGDGKITPKELSRFLHRLGYMKMNAAKKADEMVKGMDSNHDGFINVDEF
        I+  K  SF TT +  + +F LLD NGDG I+ +EL   +  LG       + A+EM++ +DSN DG ++ DEF
Subjt:  INDKKLPSF-TTFSHIELLFKLLDSNGDGKITPKELSRFLHRLGYMKMNAAKKADEMVKGMDSNHDGFINVDEF

AT5G44460.1 calmodulin like 433.7e-0636.07Show/hide
Query:  SHIELLFKLLDSNGDGKITPKELSRFLHRLGYMKMNAAKKADEMVKGMDSNHDGFINVDEF
        S +E  F + D +GDG I+  EL + L +LG  +    ++ ++M+  +DSNHDG ++  EF
Subjt:  SHIELLFKLLDSNGDGKITPKELSRFLHRLGYMKMNAAKKADEMVKGMDSNHDGFINVDEF


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGTTCTTTAGTTCTCTTTCGTCTTTCTTTACCAACTTCCATATAAAAATCTCCTCAAAACCCTTCTTCCAAAGAACCCTAATTAACGACAAAAAGCTCCCTTCTTTTAC
CACTTTTAGCCACATTGAGCTCCTCTTCAAGCTCCTTGACTCCAATGGCGATGGCAAGATCACACCTAAAGAACTCTCTCGATTTCTCCATCGTTTAGGTTACATGAAGA
TGAATGCCGCAAAAAAAGCCGATGAAATGGTGAAGGGAATGGATTCCAACCATGATGGATTCATCAACGTGGATGAATTTTTTGAGTGA
mRNA sequenceShow/hide mRNA sequence
ATGTTCTTTAGTTCTCTTTCGTCTTTCTTTACCAACTTCCATATAAAAATCTCCTCAAAACCCTTCTTCCAAAGAACCCTAATTAACGACAAAAAGCTCCCTTCTTTTAC
CACTTTTAGCCACATTGAGCTCCTCTTCAAGCTCCTTGACTCCAATGGCGATGGCAAGATCACACCTAAAGAACTCTCTCGATTTCTCCATCGTTTAGGTTACATGAAGA
TGAATGCCGCAAAAAAAGCCGATGAAATGGTGAAGGGAATGGATTCCAACCATGATGGATTCATCAACGTGGATGAATTTTTTGAGTGA
Protein sequenceShow/hide protein sequence
MFFSSLSSFFTNFHIKISSKPFFQRTLINDKKLPSFTTFSHIELLFKLLDSNGDGKITPKELSRFLHRLGYMKMNAAKKADEMVKGMDSNHDGFINVDEFFE