; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; CuGenDBv2

Sed0011937 (gene) of Chayote v1 genome

Gene IDSed0011937
OrganismSechium edule (Chayote v1)
Descriptionprotein ROOT PRIMORDIUM DEFECTIVE 1
Genome locationLG08:10153224..10155610
RNA-Seq ExpressionSed0011937
SyntenySed0011937
Gene Ontology termsGO:0003723 - RNA binding (molecular function)
InterPro domainsNA


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAA0055679.1 protein ROOT PRIMORDIUM DEFECTIVE 1 [Cucumis melo var. makuwa]1.3e-4685.84Show/hide
Query:  LEKRAVSIVHEFLTSTVEKTVEVKKINYFRKWFGIELNVRDLFLDHLGIFYLSTKGKRHTVFLREAYERDCLIESNPVYTVRRKLLHLVAMGRRGLSHSG
        LEKRAVSIVHEF+T TVEK VEV+KI++FRKWFGIELN+RDLFLDH GIFYLSTKGKRHTVFLREAYER CLI+ NPVYTVRRKLL LVAMGRRGLS S 
Subjt:  LEKRAVSIVHEFLTSTVEKTVEVKKINYFRKWFGIELNVRDLFLDHLGIFYLSTKGKRHTVFLREAYERDCLIESNPVYTVRRKLLHLVAMGRRGLSHSG

Query:  LRQKTDQIQNEDG
        LRQK DQI NEDG
Subjt:  LRQKTDQIQNEDG

TYK09929.1 protein ROOT PRIMORDIUM DEFECTIVE 1 [Cucumis melo var. makuwa]1.3e-4685.84Show/hide
Query:  LEKRAVSIVHEFLTSTVEKTVEVKKINYFRKWFGIELNVRDLFLDHLGIFYLSTKGKRHTVFLREAYERDCLIESNPVYTVRRKLLHLVAMGRRGLSHSG
        LEKRAVSIVHEF+T TVEK VEV+KI++FRKWFGIELN+RDLFLDH GIFYLSTKGKRHTVFLREAYER CLI+ NPVYTVRRKLL LVAMGRRGLS S 
Subjt:  LEKRAVSIVHEFLTSTVEKTVEVKKINYFRKWFGIELNVRDLFLDHLGIFYLSTKGKRHTVFLREAYERDCLIESNPVYTVRRKLLHLVAMGRRGLSHSG

Query:  LRQKTDQIQNEDG
        LRQK DQI NEDG
Subjt:  LRQKTDQIQNEDG

XP_008451076.1 PREDICTED: protein ROOT PRIMORDIUM DEFECTIVE 1 [Cucumis melo]1.3e-4685.84Show/hide
Query:  LEKRAVSIVHEFLTSTVEKTVEVKKINYFRKWFGIELNVRDLFLDHLGIFYLSTKGKRHTVFLREAYERDCLIESNPVYTVRRKLLHLVAMGRRGLSHSG
        LEKRAVSIVHEF+T TVEK VEV+KI++FRKWFGIELN+RDLFLDH GIFYLSTKGKRHTVFLREAYER CLI+ NPVYTVRRKLL LVAMGRRGLS S 
Subjt:  LEKRAVSIVHEFLTSTVEKTVEVKKINYFRKWFGIELNVRDLFLDHLGIFYLSTKGKRHTVFLREAYERDCLIESNPVYTVRRKLLHLVAMGRRGLSHSG

Query:  LRQKTDQIQNEDG
        LRQK DQI NEDG
Subjt:  LRQKTDQIQNEDG

XP_011660083.1 protein ROOT PRIMORDIUM DEFECTIVE 1 [Cucumis sativus]1.3e-4685.09Show/hide
Query:  LEKRAVSIVHEFLTSTVEKTVEVKKINYFRKWFGIELNVRDLFLDHLGIFYLSTKGKRHTVFLREAYERDCLIESNPVYTVRRKLLHLVAMGRRGLSHSG
        LEKRAVSIVHEF+T TVEK VEV+KI++FRKWFGIELN+RDLFLDH GIFYLSTKGKRHTVFLREAYER CLI+ NPVYTVRRKLL LVAMGRRGLS S 
Subjt:  LEKRAVSIVHEFLTSTVEKTVEVKKINYFRKWFGIELNVRDLFLDHLGIFYLSTKGKRHTVFLREAYERDCLIESNPVYTVRRKLLHLVAMGRRGLSHSG

Query:  LRQKTDQIQNEDGN
        LRQK DQI NEDG+
Subjt:  LRQKTDQIQNEDGN

XP_038879589.1 protein ROOT PRIMORDIUM DEFECTIVE 1 [Benincasa hispida]2.6e-4784.07Show/hide
Query:  LEKRAVSIVHEFLTSTVEKTVEVKKINYFRKWFGIELNVRDLFLDHLGIFYLSTKGKRHTVFLREAYERDCLIESNPVYTVRRKLLHLVAMGRRGLSHSG
        LEK+AVSIVHEF+T TVEK VE++KI++FRKWFG+ELN+RDLFLDH GIFYLSTKGKRHTVFLREAYER CLI+ NPVYTVRRKLL LVAMGRRGLSHSG
Subjt:  LEKRAVSIVHEFLTSTVEKTVEVKKINYFRKWFGIELNVRDLFLDHLGIFYLSTKGKRHTVFLREAYERDCLIESNPVYTVRRKLLHLVAMGRRGLSHSG

Query:  LRQKTDQIQNEDG
         RQK DQ+QNEDG
Subjt:  LRQKTDQIQNEDG

TrEMBL top hitse value%identityAlignment
A0A0A0LWZ0 PORR domain-containing protein6.1e-4785.09Show/hide
Query:  LEKRAVSIVHEFLTSTVEKTVEVKKINYFRKWFGIELNVRDLFLDHLGIFYLSTKGKRHTVFLREAYERDCLIESNPVYTVRRKLLHLVAMGRRGLSHSG
        LEKRAVSIVHEF+T TVEK VEV+KI++FRKWFGIELN+RDLFLDH GIFYLSTKGKRHTVFLREAYER CLI+ NPVYTVRRKLL LVAMGRRGLS S 
Subjt:  LEKRAVSIVHEFLTSTVEKTVEVKKINYFRKWFGIELNVRDLFLDHLGIFYLSTKGKRHTVFLREAYERDCLIESNPVYTVRRKLLHLVAMGRRGLSHSG

Query:  LRQKTDQIQNEDGN
        LRQK DQI NEDG+
Subjt:  LRQKTDQIQNEDGN

A0A1S3BQP0 protein ROOT PRIMORDIUM DEFECTIVE 16.1e-4785.84Show/hide
Query:  LEKRAVSIVHEFLTSTVEKTVEVKKINYFRKWFGIELNVRDLFLDHLGIFYLSTKGKRHTVFLREAYERDCLIESNPVYTVRRKLLHLVAMGRRGLSHSG
        LEKRAVSIVHEF+T TVEK VEV+KI++FRKWFGIELN+RDLFLDH GIFYLSTKGKRHTVFLREAYER CLI+ NPVYTVRRKLL LVAMGRRGLS S 
Subjt:  LEKRAVSIVHEFLTSTVEKTVEVKKINYFRKWFGIELNVRDLFLDHLGIFYLSTKGKRHTVFLREAYERDCLIESNPVYTVRRKLLHLVAMGRRGLSHSG

Query:  LRQKTDQIQNEDG
        LRQK DQI NEDG
Subjt:  LRQKTDQIQNEDG

A0A5A7UQD0 Protein ROOT PRIMORDIUM DEFECTIVE 16.1e-4785.84Show/hide
Query:  LEKRAVSIVHEFLTSTVEKTVEVKKINYFRKWFGIELNVRDLFLDHLGIFYLSTKGKRHTVFLREAYERDCLIESNPVYTVRRKLLHLVAMGRRGLSHSG
        LEKRAVSIVHEF+T TVEK VEV+KI++FRKWFGIELN+RDLFLDH GIFYLSTKGKRHTVFLREAYER CLI+ NPVYTVRRKLL LVAMGRRGLS S 
Subjt:  LEKRAVSIVHEFLTSTVEKTVEVKKINYFRKWFGIELNVRDLFLDHLGIFYLSTKGKRHTVFLREAYERDCLIESNPVYTVRRKLLHLVAMGRRGLSHSG

Query:  LRQKTDQIQNEDG
        LRQK DQI NEDG
Subjt:  LRQKTDQIQNEDG

A0A5D3CI38 Protein ROOT PRIMORDIUM DEFECTIVE 16.1e-4785.84Show/hide
Query:  LEKRAVSIVHEFLTSTVEKTVEVKKINYFRKWFGIELNVRDLFLDHLGIFYLSTKGKRHTVFLREAYERDCLIESNPVYTVRRKLLHLVAMGRRGLSHSG
        LEKRAVSIVHEF+T TVEK VEV+KI++FRKWFGIELN+RDLFLDH GIFYLSTKGKRHTVFLREAYER CLI+ NPVYTVRRKLL LVAMGRRGLS S 
Subjt:  LEKRAVSIVHEFLTSTVEKTVEVKKINYFRKWFGIELNVRDLFLDHLGIFYLSTKGKRHTVFLREAYERDCLIESNPVYTVRRKLLHLVAMGRRGLSHSG

Query:  LRQKTDQIQNEDG
        LRQK DQI NEDG
Subjt:  LRQKTDQIQNEDG

A0A6J1DW95 LOW QUALITY PROTEIN: protein ROOT PRIMORDIUM DEFECTIVE 16.1e-4784.21Show/hide
Query:  LEKRAVSIVHEFLTSTVEKTVEVKKINYFRKWFGIELNVRDLFLDHLGIFYLSTKGKRHTVFLREAYERDCLIESNPVYTVRRKLLHLVAMGRRGLSHSG
        LEKRAVSIVHEF+T TVEK VEV+KI++FRKWFGIELN+RDLFLDH GIFYLSTKGKRHTVFLREAYER CLI+ NPVYTVRRKLL LV MGRRGLSHSG
Subjt:  LEKRAVSIVHEFLTSTVEKTVEVKKINYFRKWFGIELNVRDLFLDHLGIFYLSTKGKRHTVFLREAYERDCLIESNPVYTVRRKLLHLVAMGRRGLSHSG

Query:  LRQKTDQIQNEDGN
        LRQK +QI +EDG+
Subjt:  LRQKTDQIQNEDGN

SwissProt top hitse value%identityAlignment
A0MFS5 Protein WHAT'S THIS FACTOR 1 homolog, chloroplastic2.1e-1239.13Show/hide
Query:  EKRAVSIVHEFLTSTVEKTVEVKKINYFRKWFGIELNVRDLFLDHLGIFYLSTKGKRHTVFLREAYERDCLIESNPVYTVRRKLLHLVAMGR
        EK A  ++HE L+ T EK   V  + +FR+ F     +R + + H  +FY+S KG+R +VFLREAY    LI+ +P+  V+ K+  LV++ R
Subjt:  EKRAVSIVHEFLTSTVEKTVEVKKINYFRKWFGIELNVRDLFLDHLGIFYLSTKGKRHTVFLREAYERDCLIESNPVYTVRRKLLHLVAMGR

B6TTV8 Protein WHAT'S THIS FACTOR 1, chloroplastic3.3e-1335.25Show/hide
Query:  EKRAVSIVHEFLTSTVEKTVEVKKINYFRKWFGIELNVRDLFLDHLGIFYLSTKGKRHTVFLREAYERDCLIESNPVYTVRRKLLHLVAM----------
        EK A  +VHE L+ TVEK   V  + +FR+ F    ++R + + H  +FY+S KG R +VFLREAY+   L+E N +  ++ K+  LVA+          
Subjt:  EKRAVSIVHEFLTSTVEKTVEVKKINYFRKWFGIELNVRDLFLDHLGIFYLSTKGKRHTVFLREAYERDCLIESNPVYTVRRKLLHLVAM----------

Query:  -GRRGLSHSGLRQKTDQIQNED
         G      +G  Q  DQ+ +E+
Subjt:  -GRRGLSHSGLRQKTDQIQNED

Q65XL5 Protein WHAT'S THIS FACTOR 1 homolog, chloroplastic4.7e-1239.13Show/hide
Query:  EKRAVSIVHEFLTSTVEKTVEVKKINYFRKWFGIELNVRDLFLDHLGIFYLSTKGKRHTVFLREAYERDCLIESNPVYTVRRKLLHLVAMGR
        EK A  +VHE L+ T+EK   V  + +FR+ F    ++R + + H  +FY+S KG R +VFLREAY+   L+E + +  ++ K+  LVA+ R
Subjt:  EKRAVSIVHEFLTSTVEKTVEVKKINYFRKWFGIELNVRDLFLDHLGIFYLSTKGKRHTVFLREAYERDCLIESNPVYTVRRKLLHLVAMGR

Q689D6 Protein ROOT PRIMORDIUM DEFECTIVE 14.4e-1843.1Show/hide
Query:  LEKRAVSIVHEFLTSTVEKTVEVKKINYFRKWFGIELNVRDLFLDHLGIFYLSTK---GKRHTVFLREAYERDCLIESNPVYTVRRKLLHLVAMG-RRGL
        LEKR+V+ +HE L+ TVEK + +++I +FR    +   +++  L H GIFY+ST+   GK HTVFLRE Y+R  L+E N VY  RR+L  LV M  R+  
Subjt:  LEKRAVSIVHEFLTSTVEKTVEVKKINYFRKWFGIELNVRDLFLDHLGIFYLSTK---GKRHTVFLREAYERDCLIESNPVYTVRRKLLHLVAMG-RRGL

Query:  SHSGLRQKTDQIQNED
          + L +  D + +ED
Subjt:  SHSGLRQKTDQIQNED

Arabidopsis top hitse value%identityAlignment
AT1G06440.1 Ubiquitin carboxyl-terminal hydrolase family protein5.3e-3568.52Show/hide
Query:  LEKRAVSIVHEFLTSTVEKTVEVKKINYFRKWFGIELNVRDLFLDHLGIFYLSTKGKRHTVFLREAYERDCLIESNPVYTVRRKLLHLVAMGRR-GLSHS
        +EKRAV+I HEFL  TVEK VEV+KI++FRK FGI+LN+RDLFLDH G+FY+STKGKRHTVFLREAYER  LI+ NPVY  RRKLL LV +GR   LS S
Subjt:  LEKRAVSIVHEFLTSTVEKTVEVKKINYFRKWFGIELNVRDLFLDHLGIFYLSTKGKRHTVFLREAYERDCLIESNPVYTVRRKLLHLVAMGRR-GLSHS

Query:  GLRQKTDQ
        G    ++Q
Subjt:  GLRQKTDQ

AT4G33495.1 Ubiquitin carboxyl-terminal hydrolase family protein3.1e-1943.1Show/hide
Query:  LEKRAVSIVHEFLTSTVEKTVEVKKINYFRKWFGIELNVRDLFLDHLGIFYLSTK---GKRHTVFLREAYERDCLIESNPVYTVRRKLLHLVAMG-RRGL
        LEKR+V+ +HE L+ TVEK + +++I +FR    +   +++  L H GIFY+ST+   GK HTVFLRE Y+R  L+E N VY  RR+L  LV M  R+  
Subjt:  LEKRAVSIVHEFLTSTVEKTVEVKKINYFRKWFGIELNVRDLFLDHLGIFYLSTK---GKRHTVFLREAYERDCLIESNPVYTVRRKLLHLVAMG-RRGL

Query:  SHSGLRQKTDQIQNED
          + L +  D + +ED
Subjt:  SHSGLRQKTDQIQNED

AT5G21970.1 Ubiquitin carboxyl-terminal hydrolase family protein8.8e-1441.24Show/hide
Query:  KILEKRAVSIVHEFLTSTVEKTVEVKKINYFRKWFGIELNVRDLFLDHLGIFYLSTKGKRHTVFLREAYERDCLIESNPVYTVRRKLLHLVAMGRRG
        K  +KRA++++HE L+ T+EK +    + +FR+ F +   +  +FL H GIFY+S +GKR +VFL E YE   LIE  P+   + KLL     G RG
Subjt:  KILEKRAVSIVHEFLTSTVEKTVEVKKINYFRKWFGIELNVRDLFLDHLGIFYLSTKGKRHTVFLREAYERDCLIESNPVYTVRRKLLHLVAMGRRG

AT5G45790.1 Ubiquitin carboxyl-terminal hydrolase family protein7.0e-2753.15Show/hide
Query:  EKRAVSIVHEFLTSTVEKTVEVKKINYFRKWFGIELNVRDLFLDHLGIFYLSTKGKRHTVFLREAYERDCLIESNPVYTVRRKLLHLVAMGRRGLSHSGL
        EKR V+++HE L+ TVEK VEV+++ +FRK  GIE+NVR++ L H GIFY+STKG   T+FLREAY + CLIE NP+Y VRRK+L LV +  R      L
Subjt:  EKRAVSIVHEFLTSTVEKTVEVKKINYFRKWFGIELNVRDLFLDHLGIFYLSTKGKRHTVFLREAYERDCLIESNPVYTVRRKLLHLVAMGRRGLSHSGL

Query:  RQKTDQIQNED
         Q+ D+   E+
Subjt:  RQKTDQIQNED

AT5G45790.2 Ubiquitin carboxyl-terminal hydrolase family protein7.0e-2753.15Show/hide
Query:  EKRAVSIVHEFLTSTVEKTVEVKKINYFRKWFGIELNVRDLFLDHLGIFYLSTKGKRHTVFLREAYERDCLIESNPVYTVRRKLLHLVAMGRRGLSHSGL
        EKR V+++HE L+ TVEK VEV+++ +FRK  GIE+NVR++ L H GIFY+STKG   T+FLREAY + CLIE NP+Y VRRK+L LV +  R      L
Subjt:  EKRAVSIVHEFLTSTVEKTVEVKKINYFRKWFGIELNVRDLFLDHLGIFYLSTKGKRHTVFLREAYERDCLIESNPVYTVRRKLLHLVAMGRRGLSHSGL

Query:  RQKTDQIQNED
         Q+ D+   E+
Subjt:  RQKTDQIQNED


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGTTGCATCAAGAGCTAGAGATCCAACGTTTGAGAAATTTATGGATAATTACAAAAATCTTCTCAAAGTGGTTGCTATTCAAGATCCTGGAAAAGCGAGCGGTTTCAAT
TGTTCACGAATTCTTGACTTCGACTGTAGAGAAGACGGTGGAGGTAAAGAAAATCAACTATTTTAGGAAATGGTTTGGTATTGAATTGAATGTAAGAGATCTATTCTTGG
ATCATCTTGGGATATTTTATCTCTCAACCAAGGGAAAGAGACATACCGTTTTTCTAAGAGAAGCGTATGAGAGGGATTGTTTAATAGAATCGAATCCGGTTTATACAGTA
AGGAGAAAACTTCTACATTTAGTTGCGATGGGGCGTCGTGGTCTATCTCATAGTGGCTTGAGACAGAAGACAGATCAAATTCAGAATGAAGACGGGAATTGTCTCTAG
mRNA sequenceShow/hide mRNA sequence
CTTCTTCTTTCAAATTAGGGTTTCCATTCCAATGTGTAATGGTGTTTCTTCTCTACGAATCTTGCCCAAGTCATGTGGATTTATTCAAACAATATCTGTTTCGTTCACAG
GCTCACAACGGGAGAATTTGCCATTGATTCTCTCTCAATTACCTTAGTTCTGGCCGAGGCTTTCTCAAGCTCGTTTGGGACGCATCTATGGCGGGTAAGTCGAAGCAATA
CTGAGAACTGAATGTGTATATTCATTTCCAAGTATTTTCTAAAGGAAACCCTGGATTTCTTTTCAATTTTTTGGTTGTCTTGACTTCTGAGGGATTTTAAATGTCGTATA
TTGGGCATTGCCTATTGCCTTGATTTGAGATATATGTTGATGGCTAAAAGAAAATGACCGTAGATTTCACTTTGAGAGGTGGAACGAGCTTAGTGAAAACTATTCAGGAG
ATATTTCGTCAAAATTAGCACTCTCATCATAGTATAAACTGCTATTGTGCTAATGTTGTGATTTAATTTGAAGCCCACGAAATTTTTATAGGTTTTTATATTTGTTTGTT
CATGAACGAAGTGTTGGCTGCATTTATATGCGAAGAAAGCAGTTGTGTATTGTGAGACAGGGTGAGCCAAAGAAAATTGTGCATTAAATGGGAACTCATATAGTTAGGTC
CATTTCTAAAAGTTACCGTCATCTCAATATCAATATGGTTGTTAGATGTAAAACGACATTTTCTCAATATGTTGCATCAAGAGCTAGAGATCCAACGTTTGAGAAATTTA
TGGATAATTACAAAAATCTTCTCAAAGTGGTTGCTATTCAAGATCCTGGAAAAGCGAGCGGTTTCAATTGTTCACGAATTCTTGACTTCGACTGTAGAGAAGACGGTGGA
GGTAAAGAAAATCAACTATTTTAGGAAATGGTTTGGTATTGAATTGAATGTAAGAGATCTATTCTTGGATCATCTTGGGATATTTTATCTCTCAACCAAGGGAAAGAGAC
ATACCGTTTTTCTAAGAGAAGCGTATGAGAGGGATTGTTTAATAGAATCGAATCCGGTTTATACAGTAAGGAGAAAACTTCTACATTTAGTTGCGATGGGGCGTCGTGGT
CTATCTCATAGTGGCTTGAGACAGAAGACAGATCAAATTCAGAATGAAGACGGGAATTGTCTCTAGATAACAAATGAATTAAGGGCAACAAATGTTTCGAAGCTCGTTAA
TGTCCCTACCTTCGAAGTAATTTATGAAACACGGGCATCAATCTGAAAGCACATGAAGTTATTTGAGTGCAGAATGCTGGAGAGGTTAACACTTCACTAAGGTATTTGAA
TGTATTGGGGGTAGTTGGTAATTAATTACCAATATGAAAGAGCCTTCTTAAATATAGAGAAATTGGAGAATGCCTATGTTGATGCATCTTTTTACATATATGAACATTGA
ACACCATTCTTTCAGAGAAAGGTTGAAGAACGTGGGAATTTGACCCTCTTTGCAATCTCTCTAGCGACTGGCGGATCACGAGTTTTAACACAGCGAGATAGGGATTTGTT
TGAGATATTTTTTTTTAAAAAAAATTAGTTCAACAATAATATTTGAGGATGGAATATTGGACCCTAAGATGTTTTGGTCAAGGTTATATATCACACTTCAATTACTGCTG
AGGATGATACTTTTATTTGAGAAGAAGAACAAATTGATTTGGAAGTCTGAAATTCCTTCTTTGTGGTCTGTAGACGATCATGTGTCATGACCTGAAAGAAGCTTAATTTA
CTATGTCTTTAAGGGGCGGTCTCGTTGTTCACAAGTAAGTTTAATTTTAAGATTTCTTGTTGTGTTCTAAGTCCAGACTTTGGAAGATGTAAGTACCCTCGAATATGTTT
CTCAGAAAAAAAAAGACCTTGAATATGCAGTGGGACGAACTCCAATTTGCAGTTATATAAAAAATGCTTAATTCACGTAGATGCATTTCATTCAAGATGGCACTGAATAT
ATTGACCACCCCCTTAATTATACATTTCCATTGTAACTTCATTTACGAATTTTTAGTTGGAGGTTGAAATCCCTTCTTTCACCTCTGTATTGAATTTCCCTGCTGTCGCT
ACTTTGTTGTGAAAAGACA
Protein sequenceShow/hide protein sequence
MLHQELEIQRLRNLWIITKIFSKWLLFKILEKRAVSIVHEFLTSTVEKTVEVKKINYFRKWFGIELNVRDLFLDHLGIFYLSTKGKRHTVFLREAYERDCLIESNPVYTV
RRKLLHLVAMGRRGLSHSGLRQKTDQIQNEDGNCL