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Sed0011938 (gene) of Chayote v1 genome

Gene IDSed0011938
OrganismSechium edule (Chayote v1)
DescriptionUnknown protein
Genome locationLG04:44018274..44018549
RNA-Seq ExpressionSed0011938
SyntenySed0011938
Gene Ontology termsGO:0045168 - cell-cell signaling involved in cell fate commitment (biological process)
GO:0005576 - extracellular region (cellular component)
InterPro domainsIPR039617 - CLAVATA3/ESR (CLE)-related protein


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAA0061638.1 hypothetical protein E6C27_scaffold212G00060 [Cucumis melo var. makuwa]1.2e-1867.03Show/hide
Query:  SLRFITKLAPLMAVLVMVMLVTTVVGRHATP-PWTLEEGTAE-SLNGIMVMRKLGYSKSQMEHLRRL-SASTERYTPGGPDSKHHSQPPTL
        +LR    LAPLMAVL MVMLVT    RHAT  PWT+EE T   S +  M+MRK GYSK QMEHLRRL S+ST RY PGGPDS+HHSQPP L
Subjt:  SLRFITKLAPLMAVLVMVMLVTTVVGRHATP-PWTLEEGTAE-SLNGIMVMRKLGYSKSQMEHLRRL-SASTERYTPGGPDSKHHSQPPTL

KAE8647339.1 hypothetical protein Csa_003556, partial [Cucumis sativus]2.5e-1666.67Show/hide
Query:  SLRFITKLA-PLMAVLVMVMLVTTVVGRHATP-PWTLEEGTAE-SLNGIMVMRKLGYSKSQMEHLRRL-SASTERYTPGGPDSKHHSQPP
        +LRF   LA PLMAVL M MLVT     HAT   WT+EE T   S +  MVMRK GYSK QMEHLRRL S+STERY PGGPDS+HHSQPP
Subjt:  SLRFITKLA-PLMAVLVMVMLVTTVVGRHATP-PWTLEEGTAE-SLNGIMVMRKLGYSKSQMEHLRRL-SASTERYTPGGPDSKHHSQPP

KAG6572409.1 hypothetical protein SDJN03_29137, partial [Cucurbita argyrosperma subsp. sororia]3.9e-1759.34Show/hide
Query:  RFITKLAPLMAVLVMVMLVTTVVGRHATPPWTLEE-------GTAESLNGIMVMRKLGYSKSQMEHLRRLSASTERYTPGGPDSKHHSQPP
        RF  K APL AV+ MVMLVT   GRHA P  T E        G++ S +  M+MR+LGY+KSQMEHLRRLS+ST RY PGGPDS+HHS+ P
Subjt:  RFITKLAPLMAVLVMVMLVTTVVGRHATPPWTLEE-------GTAESLNGIMVMRKLGYSKSQMEHLRRLSASTERYTPGGPDSKHHSQPP

KAG6589262.1 hypothetical protein SDJN03_17827, partial [Cucurbita argyrosperma subsp. sororia]2.0e-2673.33Show/hide
Query:  MASLRFITKLAPLMAVLVMVMLVTTVVGRHATPPWTLEEGTAESLNGIMVMRKLGYSKSQMEHLRRLSASTERYTPGGPDSKHHSQPPTL
        MA+LRF +KLAP MAVL + ML+ TV GRHATPPWT EE T ES + IM+MRK GYSK+QMEHL+RLS+STERYTPGGPDS+HHS PP L
Subjt:  MASLRFITKLAPLMAVLVMVMLVTTVVGRHATPPWTLEEGTAESLNGIMVMRKLGYSKSQMEHLRRLSASTERYTPGGPDSKHHSQPPTL

TrEMBL top hitse value%identityAlignment
A0A0A0KGI4 Uncharacterized protein4.2e-1766.3Show/hide
Query:  SLRFITKLA-PLMAVLVMVMLVTTVVGRHATP-PWTLEEGTAE-SLNGIMVMRKLGYSKSQMEHLRRL-SASTERYTPGGPDSKHHSQPPTL
        +LRF   LA PLMAVL M MLVT     HAT   WT+EE T   S +  MVMRK GYSK QMEHLRRL S+STERY PGGPDS+HHSQPP L
Subjt:  SLRFITKLA-PLMAVLVMVMLVTTVVGRHATP-PWTLEEGTAE-SLNGIMVMRKLGYSKSQMEHLRRL-SASTERYTPGGPDSKHHSQPPTL

A0A5D3C664 Uncharacterized protein5.8e-1967.03Show/hide
Query:  SLRFITKLAPLMAVLVMVMLVTTVVGRHATP-PWTLEEGTAE-SLNGIMVMRKLGYSKSQMEHLRRL-SASTERYTPGGPDSKHHSQPPTL
        +LR    LAPLMAVL MVMLVT    RHAT  PWT+EE T   S +  M+MRK GYSK QMEHLRRL S+ST RY PGGPDS+HHSQPP L
Subjt:  SLRFITKLAPLMAVLVMVMLVTTVVGRHATP-PWTLEEGTAE-SLNGIMVMRKLGYSKSQMEHLRRL-SASTERYTPGGPDSKHHSQPPTL

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGGCCAGTCTTCGTTTTATCACAAAACTAGCTCCATTAATGGCTGTCCTTGTCATGGTGATGCTTGTCACGACGGTCGTCGGCCGCCATGCAACACCGCCGTGGACGCT
GGAGGAAGGCACGGCTGAGAGCCTCAACGGCATTATGGTAATGCGTAAATTAGGTTATAGCAAAAGCCAAATGGAGCATTTGAGAAGACTTTCTGCCTCTACGGAAAGAT
ACACTCCTGGAGGACCTGACTCTAAACATCATTCTCAACCACCTACTTTACTTTAG
mRNA sequenceShow/hide mRNA sequence
ATGGCCAGTCTTCGTTTTATCACAAAACTAGCTCCATTAATGGCTGTCCTTGTCATGGTGATGCTTGTCACGACGGTCGTCGGCCGCCATGCAACACCGCCGTGGACGCT
GGAGGAAGGCACGGCTGAGAGCCTCAACGGCATTATGGTAATGCGTAAATTAGGTTATAGCAAAAGCCAAATGGAGCATTTGAGAAGACTTTCTGCCTCTACGGAAAGAT
ACACTCCTGGAGGACCTGACTCTAAACATCATTCTCAACCACCTACTTTACTTTAG
Protein sequenceShow/hide protein sequence
MASLRFITKLAPLMAVLVMVMLVTTVVGRHATPPWTLEEGTAESLNGIMVMRKLGYSKSQMEHLRRLSASTERYTPGGPDSKHHSQPPTLL