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Sed0011941 (gene) of Chayote v1 genome

Gene IDSed0011941
OrganismSechium edule (Chayote v1)
DescriptionBHLH transcription factor
Genome locationLG08:1167567..1167926
RNA-Seq ExpressionSed0011941
SyntenySed0011941
Gene Ontology termsGO:0006355 - regulation of transcription, DNA-templated (biological process)
GO:0040008 - regulation of growth (biological process)
GO:0005634 - nucleus (cellular component)
GO:0046983 - protein dimerization activity (molecular function)
InterPro domainsIPR011598 - Myc-type, basic helix-loop-helix (bHLH) domain
IPR036638 - Helix-loop-helix DNA-binding domain superfamily
IPR044293 - Transcription factor PRE


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAF7850557.1 hypothetical protein BT93_L5308 [Corymbia citriodora subsp. variegata]1.8e-1472.31Show/hide
Query:  SKPIYDEQIIDLVSKLQQLLPRIRQSQSEKVSAGKVLEETCRYIRSLQSEVDDLSHKLSELLQNN
        S  I D+QIIDLVSKLQQLLP IR  +S+KVSA KVL+ETC YIRSL  EVDDLS +LSELL N+
Subjt:  SKPIYDEQIIDLVSKLQQLLPRIRQSQSEKVSAGKVLEETCRYIRSLQSEVDDLSHKLSELLQNN

XP_002511551.1 transcription factor PRE6 [Ricinus communis]1.1e-1372.58Show/hide
Query:  SKPIYDEQIIDLVSKLQQLLPRIRQSQSEKVSAGKVLEETCRYIRSLQSEVDDLSHKLSELL
        S  I D+QI+DLVSKLQQLLP IR  +S+KVSA KVL+ETC YIRSL  EVDDLS +LSELL
Subjt:  SKPIYDEQIIDLVSKLQQLLPRIRQSQSEKVSAGKVLEETCRYIRSLQSEVDDLSHKLSELL

XP_006439625.1 transcription factor PRE6 [Citrus clementina]8.7e-1472.58Show/hide
Query:  SKPIYDEQIIDLVSKLQQLLPRIRQSQSEKVSAGKVLEETCRYIRSLQSEVDDLSHKLSELL
        S  I D+QI DLVSKLQQLLP +R ++S+KVSAGKVL+ETC YIRSL  EVDDLS +LSELL
Subjt:  SKPIYDEQIIDLVSKLQQLLPRIRQSQSEKVSAGKVLEETCRYIRSLQSEVDDLSHKLSELL

XP_010037162.1 transcription factor PRE3 [Eucalyptus grandis]8.7e-1470.77Show/hide
Query:  SKPIYDEQIIDLVSKLQQLLPRIRQSQSEKVSAGKVLEETCRYIRSLQSEVDDLSHKLSELLQNN
        S  I D+QIIDLVSKLQQLLP IR  +S+KVSA KVL+ETC +IRSL  EVDDLS +LSELL N+
Subjt:  SKPIYDEQIIDLVSKLQQLLPRIRQSQSEKVSAGKVLEETCRYIRSLQSEVDDLSHKLSELLQNN

XP_030476612.1 transcription factor PRE3-like [Syzygium oleosum]3.0e-1472.31Show/hide
Query:  SKPIYDEQIIDLVSKLQQLLPRIRQSQSEKVSAGKVLEETCRYIRSLQSEVDDLSHKLSELLQNN
        S  I D+QIIDLVSKLQQLLP IR  +S+KVSA KVL+ETC YIRSL  EVDDLS +LSELL N+
Subjt:  SKPIYDEQIIDLVSKLQQLLPRIRQSQSEKVSAGKVLEETCRYIRSLQSEVDDLSHKLSELLQNN

TrEMBL top hitse value%identityAlignment
A0A059A4U4 BHLH domain-containing protein4.2e-1470.77Show/hide
Query:  SKPIYDEQIIDLVSKLQQLLPRIRQSQSEKVSAGKVLEETCRYIRSLQSEVDDLSHKLSELLQNN
        S  I D+QIIDLVSKLQQLLP IR  +S+KVSA KVL+ETC +IRSL  EVDDLS +LSELL N+
Subjt:  SKPIYDEQIIDLVSKLQQLLPRIRQSQSEKVSAGKVLEETCRYIRSLQSEVDDLSHKLSELLQNN

A0A067GBS6 BHLH domain-containing protein4.2e-1472.58Show/hide
Query:  SKPIYDEQIIDLVSKLQQLLPRIRQSQSEKVSAGKVLEETCRYIRSLQSEVDDLSHKLSELL
        S  I D+QI DLVSKLQQLLP +R ++S+KVSAGKVL+ETC YIRSL  EVDDLS +LSELL
Subjt:  SKPIYDEQIIDLVSKLQQLLPRIRQSQSEKVSAGKVLEETCRYIRSLQSEVDDLSHKLSELL

A0A2H5NG18 BHLH domain-containing protein4.2e-1472.58Show/hide
Query:  SKPIYDEQIIDLVSKLQQLLPRIRQSQSEKVSAGKVLEETCRYIRSLQSEVDDLSHKLSELL
        S  I D+QI DLVSKLQQLLP +R ++S+KVSAGKVL+ETC YIRSL  EVDDLS +LSELL
Subjt:  SKPIYDEQIIDLVSKLQQLLPRIRQSQSEKVSAGKVLEETCRYIRSLQSEVDDLSHKLSELL

B9R976 Transcription regulator, putative5.5e-1472.58Show/hide
Query:  SKPIYDEQIIDLVSKLQQLLPRIRQSQSEKVSAGKVLEETCRYIRSLQSEVDDLSHKLSELL
        S  I D+QI+DLVSKLQQLLP IR  +S+KVSA KVL+ETC YIRSL  EVDDLS +LSELL
Subjt:  SKPIYDEQIIDLVSKLQQLLPRIRQSQSEKVSAGKVLEETCRYIRSLQSEVDDLSHKLSELL

V4TMG9 BHLH domain-containing protein4.2e-1472.58Show/hide
Query:  SKPIYDEQIIDLVSKLQQLLPRIRQSQSEKVSAGKVLEETCRYIRSLQSEVDDLSHKLSELL
        S  I D+QI DLVSKLQQLLP +R ++S+KVSAGKVL+ETC YIRSL  EVDDLS +LSELL
Subjt:  SKPIYDEQIIDLVSKLQQLLPRIRQSQSEKVSAGKVLEETCRYIRSLQSEVDDLSHKLSELL

SwissProt top hitse value%identityAlignment
B8APB5 Transcription factor ILI64.5e-1362.9Show/hide
Query:  SKPIYDEQIIDLVSKLQQLLPRIRQSQSEKVSAGKVLEETCRYIRSLQSEVDDLSHKLSELL
        S  I DEQI DLVSKLQ LLP  R   +++V + +VL+ETC YIRSL  EVDDLS +LSELL
Subjt:  SKPIYDEQIIDLVSKLQQLLPRIRQSQSEKVSAGKVLEETCRYIRSLQSEVDDLSHKLSELL

Q0DUR2 Transcription factor ILI64.5e-1362.9Show/hide
Query:  SKPIYDEQIIDLVSKLQQLLPRIRQSQSEKVSAGKVLEETCRYIRSLQSEVDDLSHKLSELL
        S  I DEQI DLVSKLQ LLP  R   +++V + +VL+ETC YIRSL  EVDDLS +LSELL
Subjt:  SKPIYDEQIIDLVSKLQQLLPRIRQSQSEKVSAGKVLEETCRYIRSLQSEVDDLSHKLSELL

Q8GW32 Transcription factor PRE61.1e-1466.13Show/hide
Query:  SKPIYDEQIIDLVSKLQQLLPRIRQSQSEKVSAGKVLEETCRYIRSLQSEVDDLSHKLSELL
        S  I D+QI DLVSKLQ L+P +R+ +S+KVSA KVL+ETC YIR+L  EVDDLS +LSELL
Subjt:  SKPIYDEQIIDLVSKLQQLLPRIRQSQSEKVSAGKVLEETCRYIRSLQSEVDDLSHKLSELL

Q9CA64 Transcription factor PRE31.0e-1261.9Show/hide
Query:  IYDEQIIDLVSKLQQLLPRIRQS-QSEKVSAGKVLEETCRYIRSLQSEVDDLSHKLSELLQNN
        I ++QI DL+ KLQQLLP +R S +S+KVSA +VL++TC YIR+L  EVDDLS +LSELL N+
Subjt:  IYDEQIIDLVSKLQQLLPRIRQS-QSEKVSAGKVLEETCRYIRSLQSEVDDLSHKLSELLQNN

Q9FLE9 Transcription factor PRE15.0e-1261.29Show/hide
Query:  IYDEQIIDLVSKLQQLLPRIRQ-SQSEKVSAGKVLEETCRYIRSLQSEVDDLSHKLSELLQN
        I D Q+IDLVSKL+Q+LP I Q  +S+K SA KVL+ETC YIR+L  EVD+LS +LS+LL++
Subjt:  IYDEQIIDLVSKLQQLLPRIRQ-SQSEKVSAGKVLEETCRYIRSLQSEVDDLSHKLSELLQN

Arabidopsis top hitse value%identityAlignment
AT1G26945.1 basic helix-loop-helix (bHLH) DNA-binding superfamily protein7.6e-1666.13Show/hide
Query:  SKPIYDEQIIDLVSKLQQLLPRIRQSQSEKVSAGKVLEETCRYIRSLQSEVDDLSHKLSELL
        S  I D+QI DLVSKLQ L+P +R+ +S+KVSA KVL+ETC YIR+L  EVDDLS +LSELL
Subjt:  SKPIYDEQIIDLVSKLQQLLPRIRQSQSEKVSAGKVLEETCRYIRSLQSEVDDLSHKLSELL

AT1G74500.1 activation-tagged BRI1(brassinosteroid-insensitive 1)-suppressor 17.1e-1461.9Show/hide
Query:  IYDEQIIDLVSKLQQLLPRIRQS-QSEKVSAGKVLEETCRYIRSLQSEVDDLSHKLSELLQNN
        I ++QI DL+ KLQQLLP +R S +S+KVSA +VL++TC YIR+L  EVDDLS +LSELL N+
Subjt:  IYDEQIIDLVSKLQQLLPRIRQS-QSEKVSAGKVLEETCRYIRSLQSEVDDLSHKLSELLQNN

AT3G28857.1 basic helix-loop-helix (bHLH) DNA-binding family protein4.6e-1361.29Show/hide
Query:  IYDEQIIDLVSKLQQLLPRIRQ-SQSEKVSAGKVLEETCRYIRSLQSEVDDLSHKLSELLQN
        I D+Q+IDLVSKL+Q LP I +  +S+KVSA KVL+ETC YIR L  EVD+LS +LS+LL +
Subjt:  IYDEQIIDLVSKLQQLLPRIRQ-SQSEKVSAGKVLEETCRYIRSLQSEVDDLSHKLSELLQN

AT5G15160.1 BANQUO 24.6e-1356.92Show/hide
Query:  SKPIYDEQIIDLVSKLQQLLPRIRQS-QSEKVSAGKVLEETCRYIRSLQSEVDDLSHKLSELLQN
        S  I D+QI DL+SKL+Q +P IRQ+ +S  VSA KVL+ETC YIR+L  E DDLS +L++LL++
Subjt:  SKPIYDEQIIDLVSKLQQLLPRIRQS-QSEKVSAGKVLEETCRYIRSLQSEVDDLSHKLSELLQN

AT5G39860.1 basic helix-loop-helix (bHLH) DNA-binding family protein3.5e-1361.29Show/hide
Query:  IYDEQIIDLVSKLQQLLPRIRQ-SQSEKVSAGKVLEETCRYIRSLQSEVDDLSHKLSELLQN
        I D Q+IDLVSKL+Q+LP I Q  +S+K SA KVL+ETC YIR+L  EVD+LS +LS+LL++
Subjt:  IYDEQIIDLVSKLQQLLPRIRQ-SQSEKVSAGKVLEETCRYIRSLQSEVDDLSHKLSELLQN


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGGAAGCCTATATAAAAAGAGGTGAGGGCAGTGGATTTTTCCCATGCAATTTGTTCTTTTTCACAATTCTTTCCAAACCCATATATGATGAACAAATTATCGATCTCGT
TTCCAAGTTGCAGCAACTCCTTCCTCGGATTCGCCAAAGCCAATCTGAGAAGGTTTCAGCAGGTAAAGTGTTAGAGGAGACGTGTAGGTACATAAGGAGTTTGCAAAGTG
AGGTGGATGATCTAAGTCACAAACTTTCAGAGTTGCTCCAAAATAACTAA
mRNA sequenceShow/hide mRNA sequence
ATGGAAGCCTATATAAAAAGAGGTGAGGGCAGTGGATTTTTCCCATGCAATTTGTTCTTTTTCACAATTCTTTCCAAACCCATATATGATGAACAAATTATCGATCTCGT
TTCCAAGTTGCAGCAACTCCTTCCTCGGATTCGCCAAAGCCAATCTGAGAAGGTTTCAGCAGGTAAAGTGTTAGAGGAGACGTGTAGGTACATAAGGAGTTTGCAAAGTG
AGGTGGATGATCTAAGTCACAAACTTTCAGAGTTGCTCCAAAATAACTAA
Protein sequenceShow/hide protein sequence
MEAYIKRGEGSGFFPCNLFFFTILSKPIYDEQIIDLVSKLQQLLPRIRQSQSEKVSAGKVLEETCRYIRSLQSEVDDLSHKLSELLQNN