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Sed0011991 (gene) of Chayote v1 genome

Gene IDSed0011991
OrganismSechium edule (Chayote v1)
Description50S ribosomal protein 5, chloroplastic
Genome locationLG03:15396340..15398959
RNA-Seq ExpressionSed0011991
SyntenySed0011991
Gene Ontology termsGO:0032544 - plastid translation (biological process)
GO:0005840 - ribosome (cellular component)
GO:0009536 - plastid (cellular component)
InterPro domainsIPR040307 - 50S ribosomal protein 5, chloroplastic


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAG7013851.1 50S ribosomal protein 5, chloroplastic [Cucurbita argyrosperma subsp. argyrosperma]2.0e-5081.01Show/hide
Query:  MAFLLCSNPLPTSLLSSPF----PPSPSCFPTISAAATKSMLLIKPIGFQPKKL-GVRLRNPTFVENTASLIVKAASEINATGETDSSKPQPPAEAKK-D
        MAFLLCSNPL  SL SS F     PSPSCFP  + A   SMLL+KP GFQPK   GVRLRNP+FVENT S IVKAASEI+ATGETDS++P+P AEAKK D
Subjt:  MAFLLCSNPLPTSLLSSPF----PPSPSCFPTISAAATKSMLLIKPIGFQPKKL-GVRLRNPTFVENTASLIVKAASEINATGETDSSKPQPPAEAKK-D

Query:  VSVDKLPLESKLQERLEQKARMKLAKKIRLRRKRLVRKRHLRKKGRWPPSKMKKLKNV
        VSVDKLPLESKLQERLEQKARMKLAKKIRLRRKRLVRKRHLRKKGRWPPSKMKKLKNV
Subjt:  VSVDKLPLESKLQERLEQKARMKLAKKIRLRRKRLVRKRHLRKKGRWPPSKMKKLKNV

XP_022154476.1 50S ribosomal protein 5, chloroplastic [Momordica charantia]7.3e-5382.28Show/hide
Query:  MAFLLCSNPLPTSLLSSPF----PPSPSCFPTISAAATKSMLLIKPIGFQPKKL-GVRLRNPTFVENTASLIVKAASEINATGETDSSKPQPPAEAKK-D
        MAFLLCSNPL TSL SSPF     PSPSCFPT SAA + S+LL++P+GFQPK   GVRLRN +FVENTASLIVKA SEI+ TGETDS++PQPPAEAKK D
Subjt:  MAFLLCSNPLPTSLLSSPF----PPSPSCFPTISAAATKSMLLIKPIGFQPKKL-GVRLRNPTFVENTASLIVKAASEINATGETDSSKPQPPAEAKK-D

Query:  VSVDKLPLESKLQERLEQKARMKLAKKIRLRRKRLVRKRHLRKKGRWPPSKMKKLKNV
        V VDKLPLESKLQERLEQK RMKLAKKIRLRRKRLVRKRHLRKKGRWPPSKMKKLKNV
Subjt:  VSVDKLPLESKLQERLEQKARMKLAKKIRLRRKRLVRKRHLRKKGRWPPSKMKKLKNV

XP_022949869.1 50S ribosomal protein 5 alpha, chloroplastic-like [Cucurbita moschata]8.1e-5281.25Show/hide
Query:  MAFLLCSNPLPTSLLSSPF------PPSPSCFPTISAAATKSMLLIKPIGFQPKKL-GVRLRNPTFVENTASLIVKAASEINATGETDSSKPQPPAEAKK
        MAFLLCSNPL  SL SS F       PSPSCFP  + AA  SMLL+KP GFQPK   GVRLRNP+FVENT S IVKAASEI+ATGETDS++P+PPAEAKK
Subjt:  MAFLLCSNPLPTSLLSSPF------PPSPSCFPTISAAATKSMLLIKPIGFQPKKL-GVRLRNPTFVENTASLIVKAASEINATGETDSSKPQPPAEAKK

Query:  -DVSVDKLPLESKLQERLEQKARMKLAKKIRLRRKRLVRKRHLRKKGRWPPSKMKKLKNV
         DVSVDKLPLESKLQERLEQKARMKLAKKIRLRRKRLVRKRHLRKKGRWPPSKMKKLKNV
Subjt:  -DVSVDKLPLESKLQERLEQKARMKLAKKIRLRRKRLVRKRHLRKKGRWPPSKMKKLKNV

XP_023543496.1 50S ribosomal protein 5 alpha, chloroplastic-like [Cucurbita pepo subsp. pepo]4.4e-5079.38Show/hide
Query:  MAFLLCSNPLPTSLLSSPF------PPSPSCFPTISAAATKSMLLIKPIGFQPKKL-GVRLRNPTFVENTASLIVKAASEINATGETDSSKPQPPAEAKK
        MAFLLCSNPL  SL SS F       PSPSCFP ++ AA  SMLL+KP GFQPK   GVRLRNP+FVENT S  VKAASEI+ATGETDS++P+P AEAKK
Subjt:  MAFLLCSNPLPTSLLSSPF------PPSPSCFPTISAAATKSMLLIKPIGFQPKKL-GVRLRNPTFVENTASLIVKAASEINATGETDSSKPQPPAEAKK

Query:  -DVSVDKLPLESKLQERLEQKARMKLAKKIRLRRKRLVRKRHLRKKGRWPPSKMKKLKNV
         DV VDKLPLESKLQERLEQKARMKLAKKIRLRRKRLVRKRHLRKKGRWPPSKMKKLKNV
Subjt:  -DVSVDKLPLESKLQERLEQKARMKLAKKIRLRRKRLVRKRHLRKKGRWPPSKMKKLKNV

XP_038881132.1 50S ribosomal protein 5, chloroplastic [Benincasa hispida]3.7e-4980.25Show/hide
Query:  AFLLCSNPLPTSLLSSPF----PPSPSCFPTISAAATKSMLLIKPIGFQPKKL-GVRLRNPTFVENTASLIVKAASEINATGETDSSKPQPPAEAKK-DV
        +FLLCSNPL TSL S PF     PSPSCFP  SAA +  MLL+KPIGFQPK   GVRL  P+FVEN ASLIVKAASEI+A G+TDSS+ QPPAEAKK DV
Subjt:  AFLLCSNPLPTSLLSSPF----PPSPSCFPTISAAATKSMLLIKPIGFQPKKL-GVRLRNPTFVENTASLIVKAASEINATGETDSSKPQPPAEAKK-DV

Query:  SVDKLPLESKLQERLEQKARMKLAKKIRLRRKRLVRKRHLRKKGRWPPSKMKKLKNV
         VDKLPLESKLQERLEQKARMKLAKKIRLRRKRLV+KRHLRKKGRWPPSKMKKLKNV
Subjt:  SVDKLPLESKLQERLEQKARMKLAKKIRLRRKRLVRKRHLRKKGRWPPSKMKKLKNV

TrEMBL top hitse value%identityAlignment
A0A0A0L3F4 Uncharacterized protein1.1e-4680.39Show/hide
Query:  AFLLCSNPLPTSLLSSPFPPSPSCFPTISAAATKSMLLIKPIGFQPKKL-GVRLRNPTFVENTASLIVKAASEINATGETDSSKPQPPAEAKK-DVSVDK
        +FLL SNPL TS   S   PSPSCFP  SA  + SMLL+KPIGFQPK   GVRLRN +FVENTASL+VKAASE +ATGETDSS  QP AEAKK DV VDK
Subjt:  AFLLCSNPLPTSLLSSPFPPSPSCFPTISAAATKSMLLIKPIGFQPKKL-GVRLRNPTFVENTASLIVKAASEINATGETDSSKPQPPAEAKK-DVSVDK

Query:  LPLESKLQERLEQKARMKLAKKIRLRRKRLVRKRHLRKKGRWPPSKMKKLKNV
        LPLESKLQERLEQKARMKLAKKIRLRRKRLV+KRHLRKKGRWPPSKMKKLKNV
Subjt:  LPLESKLQERLEQKARMKLAKKIRLRRKRLVRKRHLRKKGRWPPSKMKKLKNV

A0A6J1DNT9 50S ribosomal protein 5, chloroplastic3.5e-5382.28Show/hide
Query:  MAFLLCSNPLPTSLLSSPF----PPSPSCFPTISAAATKSMLLIKPIGFQPKKL-GVRLRNPTFVENTASLIVKAASEINATGETDSSKPQPPAEAKK-D
        MAFLLCSNPL TSL SSPF     PSPSCFPT SAA + S+LL++P+GFQPK   GVRLRN +FVENTASLIVKA SEI+ TGETDS++PQPPAEAKK D
Subjt:  MAFLLCSNPLPTSLLSSPF----PPSPSCFPTISAAATKSMLLIKPIGFQPKKL-GVRLRNPTFVENTASLIVKAASEINATGETDSSKPQPPAEAKK-D

Query:  VSVDKLPLESKLQERLEQKARMKLAKKIRLRRKRLVRKRHLRKKGRWPPSKMKKLKNV
        V VDKLPLESKLQERLEQK RMKLAKKIRLRRKRLVRKRHLRKKGRWPPSKMKKLKNV
Subjt:  VSVDKLPLESKLQERLEQKARMKLAKKIRLRRKRLVRKRHLRKKGRWPPSKMKKLKNV

A0A6J1EBJ3 50S ribosomal protein 5, chloroplastic-like2.4e-4678.43Show/hide
Query:  MAFLLCSNPLPTSLLSSPFPPSPSCFPTISAAATKSMLLIKPIGFQPKKL-GVRLRNPTFVENTASLIVKAASEINATGETDSSKPQPPAEAKKDVSVDK
        MAFLL SNP+ TSL SS FPPSPSCFP +++AA  SMLL+KP  FQPK   G  LRNP+FVEN +SLIVKAASEI+AT ETDSS+PQPPA     V VDK
Subjt:  MAFLLCSNPLPTSLLSSPFPPSPSCFPTISAAATKSMLLIKPIGFQPKKL-GVRLRNPTFVENTASLIVKAASEINATGETDSSKPQPPAEAKKDVSVDK

Query:  LPLESKLQERLEQKARMKLAKKIRLRRKRLVRKRHLRKKGRWPPSKMKKLKNV
        LPLESKLQER EQKARMKLAKKIRLRRKRLV+KRHLRKKGRWPPSKMKKLKNV
Subjt:  LPLESKLQERLEQKARMKLAKKIRLRRKRLVRKRHLRKKGRWPPSKMKKLKNV

A0A6J1GE62 50S ribosomal protein 5 alpha, chloroplastic-like3.9e-5281.25Show/hide
Query:  MAFLLCSNPLPTSLLSSPF------PPSPSCFPTISAAATKSMLLIKPIGFQPKKL-GVRLRNPTFVENTASLIVKAASEINATGETDSSKPQPPAEAKK
        MAFLLCSNPL  SL SS F       PSPSCFP  + AA  SMLL+KP GFQPK   GVRLRNP+FVENT S IVKAASEI+ATGETDS++P+PPAEAKK
Subjt:  MAFLLCSNPLPTSLLSSPF------PPSPSCFPTISAAATKSMLLIKPIGFQPKKL-GVRLRNPTFVENTASLIVKAASEINATGETDSSKPQPPAEAKK

Query:  -DVSVDKLPLESKLQERLEQKARMKLAKKIRLRRKRLVRKRHLRKKGRWPPSKMKKLKNV
         DVSVDKLPLESKLQERLEQKARMKLAKKIRLRRKRLVRKRHLRKKGRWPPSKMKKLKNV
Subjt:  -DVSVDKLPLESKLQERLEQKARMKLAKKIRLRRKRLVRKRHLRKKGRWPPSKMKKLKNV

A0A6J1HS41 50S ribosomal protein 5 alpha, chloroplastic-like9.0e-4979.75Show/hide
Query:  MAFLLCSNPLPTSLLS---SPFP-PSPSCFPTISAAATKSMLLIKPIGFQPKKL-GVRLRNPTFVENTASLIVKAASEINATGETDSSKPQPPAEAKK-D
        MAFLLCSNPL  SL S   SP P PSPSCFP  + +A  SM L+KP GFQPK   GVRLRNP+FVENT S IVKAASEI+ TGETDS++P+P AEAKK D
Subjt:  MAFLLCSNPLPTSLLS---SPFP-PSPSCFPTISAAATKSMLLIKPIGFQPKKL-GVRLRNPTFVENTASLIVKAASEINATGETDSSKPQPPAEAKK-D

Query:  VSVDKLPLESKLQERLEQKARMKLAKKIRLRRKRLVRKRHLRKKGRWPPSKMKKLKNV
        V VDKLPLESKLQERLEQKARMKLAKKIRLRRKRLVRKRHLRKKGRWPPSKMKKLKNV
Subjt:  VSVDKLPLESKLQERLEQKARMKLAKKIRLRRKRLVRKRHLRKKGRWPPSKMKKLKNV

SwissProt top hitse value%identityAlignment
P11891 50S ribosomal protein 5, chloroplastic1.8e-1442.68Show/hide
Query:  LLCSNPLPTSLL--SSPFPPSPSCFPT------ISAAATKSMLLIKPIGFQPKKLGVRLRNPTFVENTASLIVKAASEINATGETDSSKPQPPAEAKKDV
        LLC N   T+ +  SS   P P+  P       +     K   ++ PI  +P+K      N  F+ + A     A ++ N     + S+ +  ++    V
Subjt:  LLCSNPLPTSLL--SSPFPPSPSCFPT------ISAAATKSMLLIKPIGFQPKKLGVRLRNPTFVENTASLIVKAASEINATGETDSSKPQPPAEAKKDV

Query:  SVDKLPLESKLQERLEQKARMKLAKKIRLRRKRLVRKRHLRKKGRWPPSKMKKLKNV
        SVDKLPLESKL+ER E+  +MKLAKKIRL+RKRLV+KR LRKKG WPPSKMKKL+ V
Subjt:  SVDKLPLESKLQERLEQKARMKLAKKIRLRRKRLVRKRHLRKKGRWPPSKMKKLKNV

P27684 50S ribosomal protein 5 alpha, chloroplastic8.2e-1546.58Show/hide
Query:  LSSPFPPSPSCFPTISAAATKSMLLIK----PIGFQPKKLGVRL--RNPTFVENTASLI--VKAASEINATGETDSSKPQPPAEAKKDVSVDKLPLESKL
        L SP     S  P  S A + S   IK     +   P   G RL    P   +   +++  V AA+E  A  + D SK +     + ++SV  LPLESKL
Subjt:  LSSPFPPSPSCFPTISAAATKSMLLIK----PIGFQPKKLGVRL--RNPTFVENTASLI--VKAASEINATGETDSSKPQPPAEAKKDVSVDKLPLESKL

Query:  QERLEQKARMKLAKKIRLRRKRLVRKRHLRKKGRWPPSKMKKLKNV
        Q +LEQK +MK+AKKIRLRR RL+RKR LRK+G WPPSKMKKLKNV
Subjt:  QERLEQKARMKLAKKIRLRRKRLVRKRHLRKKGRWPPSKMKKLKNV

Q9LER7 50S ribosomal protein 5, chloroplastic2.0e-1347.71Show/hide
Query:  LLCSNPLPT-SLLSSPFPPSPSCFPTISAAATKSMLLIKPIGFQPKKLGVRLRNPTFVENTASLIVKAASEINATGETDSSKPQPPAEAKKDVSVDKLPL
        LLC N LP+ S LSS    S S     S +    +L +KP   + K   V L   +   +   ++VKAA+     G    SK +P       V VDKLPL
Subjt:  LLCSNPLPT-SLLSSPFPPSPSCFPTISAAATKSMLLIKPIGFQPKKLGVRLRNPTFVENTASLIVKAASEINATGETDSSKPQPPAEAKKDVSVDKLPL

Query:  ESKLQER---LEQKARMKLAKKIRLRRKRLVRKRHLRKKGRWPPSKMKKLKNV
        ESK  +    LE + +MKLAKKIRLRRKRLVRKR +RKKGRWPPSKMKK KNV
Subjt:  ESKLQER---LEQKARMKLAKKIRLRRKRLVRKRHLRKKGRWPPSKMKKLKNV

Arabidopsis top hitse value%identityAlignment
AT3G56910.1 plastid-specific 50S ribosomal protein 51.4e-1447.71Show/hide
Query:  LLCSNPLPT-SLLSSPFPPSPSCFPTISAAATKSMLLIKPIGFQPKKLGVRLRNPTFVENTASLIVKAASEINATGETDSSKPQPPAEAKKDVSVDKLPL
        LLC N LP+ S LSS    S S     S +    +L +KP   + K   V L   +   +   ++VKAA+     G    SK +P       V VDKLPL
Subjt:  LLCSNPLPT-SLLSSPFPPSPSCFPTISAAATKSMLLIKPIGFQPKKLGVRLRNPTFVENTASLIVKAASEINATGETDSSKPQPPAEAKKDVSVDKLPL

Query:  ESKLQER---LEQKARMKLAKKIRLRRKRLVRKRHLRKKGRWPPSKMKKLKNV
        ESK  +    LE + +MKLAKKIRLRRKRLVRKR +RKKGRWPPSKMKK KNV
Subjt:  ESKLQER---LEQKARMKLAKKIRLRRKRLVRKRHLRKKGRWPPSKMKKLKNV


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGGCTTTTCTTCTCTGCTCCAATCCCCTTCCCACCTCTCTCCTTTCATCGCCATTTCCGCCGTCGCCGTCATGTTTTCCGACGATCTCCGCCGCCGCCACGAAATCTAT
GTTGCTCATTAAGCCTATTGGGTTTCAGCCAAAAAAATTAGGAGTTCGACTTCGAAACCCCACTTTTGTTGAGAATACCGCGTCATTGATTGTCAAAGCTGCATCCGAGA
TTAATGCTACAGGAGAAACTGATAGTAGTAAACCACAGCCCCCTGCAGAAGCTAAAAAAGATGTTTCAGTTGACAAACTTCCATTAGAATCAAAGCTGCAAGAGAGACTG
GAGCAGAAGGCAAGGATGAAGCTAGCAAAAAAGATTAGGCTGCGAAGGAAGCGCCTCGTTCGTAAGCGCCATTTGAGGAAGAAGGGACGATGGCCTCCTTCGAAGATGAA
GAAGTTGAAGAATGTTTGA
mRNA sequenceShow/hide mRNA sequence
GATAAATAGAACTTATCCAAAGGAAGCTAAGGGTTCTCAGACCGGAGCAAACCATCAATGGCTTTTCTTCTCTGCTCCAATCCCCTTCCCACCTCTCTCCTTTCATCGCC
ATTTCCGCCGTCGCCGTCATGTTTTCCGACGATCTCCGCCGCCGCCACGAAATCTATGTTGCTCATTAAGCCTATTGGGTTTCAGCCAAAAAAATTAGGAGTTCGACTTC
GAAACCCCACTTTTGTTGAGAATACCGCGTCATTGATTGTCAAAGCTGCATCCGAGATTAATGCTACAGGAGAAACTGATAGTAGTAAACCACAGCCCCCTGCAGAAGCT
AAAAAAGATGTTTCAGTTGACAAACTTCCATTAGAATCAAAGCTGCAAGAGAGACTGGAGCAGAAGGCAAGGATGAAGCTAGCAAAAAAGATTAGGCTGCGAAGGAAGCG
CCTCGTTCGTAAGCGCCATTTGAGGAAGAAGGGACGATGGCCTCCTTCGAAGATGAAGAAGTTGAAGAATGTTTGATAATCTTTGGCTCTTTCAATTCCTGCAGGTTTAG
AGGTGACCCTACTTCTCCTCATTGCTTTCATTTTATTCTGTCTAATATTTTTTGTACTTTCATGAAAATGTACTTGTTTCTTTATATATCTGAAAGAATTCAGTGAGTAA
TGGAATGTGCAAATTGTGCGTAGATTTCAATGACTAATGGTGAGTTTAAAGATGATCTGTACATGAATACTTGATTTAGATTTGTATGAGTATATCCCCTTCTTAAAACA
TTCAACTCCCC
Protein sequenceShow/hide protein sequence
MAFLLCSNPLPTSLLSSPFPPSPSCFPTISAAATKSMLLIKPIGFQPKKLGVRLRNPTFVENTASLIVKAASEINATGETDSSKPQPPAEAKKDVSVDKLPLESKLQERL
EQKARMKLAKKIRLRRKRLVRKRHLRKKGRWPPSKMKKLKNV