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Sed0012008 (gene) of Chayote v1 genome

Gene IDSed0012008
OrganismSechium edule (Chayote v1)
Descriptionsigma factor binding protein 2, chloroplastic-like
Genome locationLG12:7656936..7657676
RNA-Seq ExpressionSed0012008
SyntenySed0012008
Gene Ontology termsGO:0051091 - positive regulation of DNA-binding transcription factor activity (biological process)
InterPro domainsIPR008889 - VQ
IPR039335 - Sigma factor binding protein 1/2


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAG7027710.1 Sigma factor binding protein 1, chloroplastic, partial [Cucurbita argyrosperma subsp. argyrosperma]1.4e-2055.56Show/hide
Query:  MDSSLIASEVQEISKQATRKRKASNKKNQPLKVVYISNPMRVQTCAAKFRALVQELTGRDAEFPDPARCHSASSLRETNAQKIQKGDENEELVLDLAAIE
        M+SSL+  EV+E  K+  R RK  ++KNQPLKVVYISNPMRVQ  AA+FR LVQELTG+DA    P+   ++    ETN +KIQ  D++E+L+L  AA+E
Subjt:  MDSSLIASEVQEISKQATRKRKASNKKNQPLKVVYISNPMRVQTCAAKFRALVQELTGRDAEFPDPARCHSASSLRETNAQKIQKGDENEELVLDLAAIE

Query:  DFNDVFLG
        D +D FLG
Subjt:  DFNDVFLG

XP_011652185.1 uncharacterized protein LOC105434994 [Cucumis sativus]1.9e-2250.72Show/hide
Query:  MDSSLIASEVQEISK---QATRKRKASNKKNQPLKVVYISNPMRVQTCAAKFRALVQELTGRDAEFPDPARCHSASSLRETNAQKIQK------GDENE-
        MD SL+ SE+    K   + TRKRK+  +  QPLKVVYISNPMRV T A++FRALVQELTGRDAEFPDP + + ASS    N   ++K      G+E+E 
Subjt:  MDSSLIASEVQEISK---QATRKRKASNKKNQPLKVVYISNPMRVQTCAAKFRALVQELTGRDAEFPDPARCHSASSLRETNAQKIQK------GDENE-

Query:  ELVLDLAAIEDFNDVFLGDSYDSLEDIFTREIMDKLAA
        EL++D +  +D    FL  SY+SLEDI  R++M+   A
Subjt:  ELVLDLAAIEDFNDVFLGDSYDSLEDIFTREIMDKLAA

XP_022147780.1 sigma factor binding protein 2, chloroplastic-like [Momordica charantia]2.6e-2759.2Show/hide
Query:  MDSSLIASEVQEISKQATRKRKASNKKNQPLKVVYISNPMRVQTCAAKFRALVQELTGRDAEFPDPARCHSAS-SLRETNAQKIQKGDENEELVLDLA-A
        MD +LI SE++ + K+ TRKRK S +KNQPLKVVYISNPMRV T A++FRALVQELTGRDAEFPDPA+ H AS  + E N +K ++GD++EE  LD+A  
Subjt:  MDSSLIASEVQEISKQATRKRKASNKKNQPLKVVYISNPMRVQTCAAKFRALVQELTGRDAEFPDPARCHSAS-SLRETNAQKIQKGDENEELVLDLA-A

Query:  IEDFNDVFLGDSYDSLEDIFTREIM
        +ED ND FL   Y+S E++  RE++
Subjt:  IEDFNDVFLGDSYDSLEDIFTREIM

XP_022941301.1 uncharacterized protein LOC111446639 [Cucurbita moschata]5.8e-2755.47Show/hide
Query:  MDSSLIASEVQEISKQATRKRKASNKKNQPLKVVYISNPMRVQTCAAKFRALVQELTGRDAEFPDPARCHSASSLRETNAQKIQKGDENEELVLDLAAIE
        M+SSL+  +V+E  K+  R RK  ++KNQPLKVVYISNPMRVQ  AA+FR LVQELTG+DA    P+   ++    ETN +KIQ  D++E+L+L  AA+E
Subjt:  MDSSLIASEVQEISKQATRKRKASNKKNQPLKVVYISNPMRVQTCAAKFRALVQELTGRDAEFPDPARCHSASSLRETNAQKIQKGDENEELVLDLAAIE

Query:  DFNDVFLGDSYDSLEDIFTREIMDKLAA
        D +D FLG SY+S E IF R+++DKLAA
Subjt:  DFNDVFLGDSYDSLEDIFTREIMDKLAA

XP_023539403.1 uncharacterized protein LOC111800056 [Cucurbita pepo subsp. pepo]1.7e-2353.38Show/hide
Query:  MDSSLIASEVQEISKQATRKRKASNKKNQPLKVVYISNPMRVQTCAAKFRALVQELTGRDA-EFPDPARCHSASSLRETNAQKIQKGDENEELVLDL---
        M+SSL+  +V+E  K+  RKRK  ++KNQPLKVVYISNPMRVQ  AA+FR LVQ+LTG+DA +FP  A   +     ETN +KIQ  D++++  L L   
Subjt:  MDSSLIASEVQEISKQATRKRKASNKKNQPLKVVYISNPMRVQTCAAKFRALVQELTGRDA-EFPDPARCHSASSLRETNAQKIQKGDENEELVLDL---

Query:  -AAIEDFNDVFLGDSYDSLEDIFTREIMDKLAA
         A +ED +D FLG SY+SLE IF R+++D+LAA
Subjt:  -AAIEDFNDVFLGDSYDSLEDIFTREIMDKLAA

TrEMBL top hitse value%identityAlignment
A0A0A0LFH5 VQ domain-containing protein9.3e-2350.72Show/hide
Query:  MDSSLIASEVQEISK---QATRKRKASNKKNQPLKVVYISNPMRVQTCAAKFRALVQELTGRDAEFPDPARCHSASSLRETNAQKIQK------GDENE-
        MD SL+ SE+    K   + TRKRK+  +  QPLKVVYISNPMRV T A++FRALVQELTGRDAEFPDP + + ASS    N   ++K      G+E+E 
Subjt:  MDSSLIASEVQEISK---QATRKRKASNKKNQPLKVVYISNPMRVQTCAAKFRALVQELTGRDAEFPDPARCHSASSLRETNAQKIQK------GDENE-

Query:  ELVLDLAAIEDFNDVFLGDSYDSLEDIFTREIMDKLAA
        EL++D +  +D    FL  SY+SLEDI  R++M+   A
Subjt:  ELVLDLAAIEDFNDVFLGDSYDSLEDIFTREIMDKLAA

A0A1S3B8H6 uncharacterized protein LOC1034871677.4e-2046.97Show/hide
Query:  MDSSLIASEVQEIS---KQATRKRKASNKKNQPLKVVYISNPMRVQTCAAKFRALVQELTGRDAEFPDPARCHSAS-SLRETNAQKIQKGDENEELVLDL
        MD +L+ SE+   +   K+ TRKRK+  +  QPLKVVYISNPMRV T A++FRALVQELTGRDAEFPDP++ + AS  +   + +K    D+ E+   +L
Subjt:  MDSSLIASEVQEIS---KQATRKRKASNKKNQPLKVVYISNPMRVQTCAAKFRALVQELTGRDAEFPDPARCHSAS-SLRETNAQKIQKGDENEELVLDL

Query:  AAIEDFNDVFLGDSYDSLEDIFTREIMDKLAA
              +D F   S++SLEDI  R++M+   A
Subjt:  AAIEDFNDVFLGDSYDSLEDIFTREIMDKLAA

A0A5D3DPQ4 Sigma factor binding protein 27.4e-2046.97Show/hide
Query:  MDSSLIASEVQEIS---KQATRKRKASNKKNQPLKVVYISNPMRVQTCAAKFRALVQELTGRDAEFPDPARCHSAS-SLRETNAQKIQKGDENEELVLDL
        MD +L+ SE+   +   K+ TRKRK+  +  QPLKVVYISNPMRV T A++FRALVQELTGRDAEFPDP++ + AS  +   + +K    D+ E+   +L
Subjt:  MDSSLIASEVQEIS---KQATRKRKASNKKNQPLKVVYISNPMRVQTCAAKFRALVQELTGRDAEFPDPARCHSAS-SLRETNAQKIQKGDENEELVLDL

Query:  AAIEDFNDVFLGDSYDSLEDIFTREIMDKLAA
              +D F   S++SLEDI  R++M+   A
Subjt:  AAIEDFNDVFLGDSYDSLEDIFTREIMDKLAA

A0A6J1D137 sigma factor binding protein 2, chloroplastic-like1.3e-2759.2Show/hide
Query:  MDSSLIASEVQEISKQATRKRKASNKKNQPLKVVYISNPMRVQTCAAKFRALVQELTGRDAEFPDPARCHSAS-SLRETNAQKIQKGDENEELVLDLA-A
        MD +LI SE++ + K+ TRKRK S +KNQPLKVVYISNPMRV T A++FRALVQELTGRDAEFPDPA+ H AS  + E N +K ++GD++EE  LD+A  
Subjt:  MDSSLIASEVQEISKQATRKRKASNKKNQPLKVVYISNPMRVQTCAAKFRALVQELTGRDAEFPDPARCHSAS-SLRETNAQKIQKGDENEELVLDLA-A

Query:  IEDFNDVFLGDSYDSLEDIFTREIM
        +ED ND FL   Y+S E++  RE++
Subjt:  IEDFNDVFLGDSYDSLEDIFTREIM

A0A6J1FKR4 uncharacterized protein LOC1114466392.8e-2755.47Show/hide
Query:  MDSSLIASEVQEISKQATRKRKASNKKNQPLKVVYISNPMRVQTCAAKFRALVQELTGRDAEFPDPARCHSASSLRETNAQKIQKGDENEELVLDLAAIE
        M+SSL+  +V+E  K+  R RK  ++KNQPLKVVYISNPMRVQ  AA+FR LVQELTG+DA    P+   ++    ETN +KIQ  D++E+L+L  AA+E
Subjt:  MDSSLIASEVQEISKQATRKRKASNKKNQPLKVVYISNPMRVQTCAAKFRALVQELTGRDAEFPDPARCHSASSLRETNAQKIQKGDENEELVLDLAAIE

Query:  DFNDVFLGDSYDSLEDIFTREIMDKLAA
        D +D FLG SY+S E IF R+++DKLAA
Subjt:  DFNDVFLGDSYDSLEDIFTREIMDKLAA

SwissProt top hitse value%identityAlignment
O80669 Sigma factor binding protein 2, chloroplastic1.1e-0760.47Show/hide
Query:  RKRKASNKKNQPLKVVYISNPMRVQTCAAKFRALVQELTGRDA
        ++++ S   ++P+KV YISNPMRV+TC +KFR LVQELTG+DA
Subjt:  RKRKASNKKNQPLKVVYISNPMRVQTCAAKFRALVQELTGRDA

Q9LDH1 Sigma factor binding protein 1, chloroplastic3.5e-1150Show/hide
Query:  SSLIASEVQEISKQATRKRKASNKKNQPLKVVYISNPMRVQTCAAKFRALVQELTGRDAEFPDPARCHSASS
        +SL   +   +S+++ +++K +   N+P+KV YISNPMRVQTCA+KFR LVQELTG+DA    P   +S SS
Subjt:  SSLIASEVQEISKQATRKRKASNKKNQPLKVVYISNPMRVQTCAAKFRALVQELTGRDAEFPDPARCHSASS

Arabidopsis top hitse value%identityAlignment
AT2G41180.1 VQ motif-containing protein7.6e-0960.47Show/hide
Query:  RKRKASNKKNQPLKVVYISNPMRVQTCAAKFRALVQELTGRDA
        ++++ S   ++P+KV YISNPMRV+TC +KFR LVQELTG+DA
Subjt:  RKRKASNKKNQPLKVVYISNPMRVQTCAAKFRALVQELTGRDA

AT3G56710.1 sigma factor binding protein 12.5e-1250Show/hide
Query:  SSLIASEVQEISKQATRKRKASNKKNQPLKVVYISNPMRVQTCAAKFRALVQELTGRDAEFPDPARCHSASS
        +SL   +   +S+++ +++K +   N+P+KV YISNPMRVQTCA+KFR LVQELTG+DA    P   +S SS
Subjt:  SSLIASEVQEISKQATRKRKASNKKNQPLKVVYISNPMRVQTCAAKFRALVQELTGRDAEFPDPARCHSASS


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGGATTCAAGTTTAATTGCAAGTGAAGTGCAAGAAATCTCCAAGCAAGCAACAAGGAAAAGAAAGGCATCCAATAAGAAGAACCAACCACTAAAAGTTGTGTACATATC
GAATCCGATGAGAGTTCAAACCTGCGCGGCTAAGTTTCGAGCCTTGGTCCAAGAACTCACAGGCCGAGACGCCGAGTTCCCGGACCCGGCTCGATGTCATTCGGCATCGA
GCCTTCGAGAGACTAATGCTCAAAAGATACAAAAAGGGGACGAGAATGAAGAGTTGGTGCTTGATTTGGCCGCAATTGAGGATTTTAATGATGTTTTTCTTGGGGATTCG
TATGATAGCTTGGAAGATATTTTCACCAGGGAAATTATGGACAAATTGGCTGCGTGA
mRNA sequenceShow/hide mRNA sequence
TTTGTCTTTTCTTTTCCTCAAGGATCTCTCTCTACTTTCCTAGAAATCTCCTACCTTGTATATCTCGCAGCCACTACACCCTCTTATCTTTCAATTTCCCATCAAAACCC
TCCAATTTTTCCAAACCAAAACTCAAAAATGGATTCAAGTTTAATTGCAAGTGAAGTGCAAGAAATCTCCAAGCAAGCAACAAGGAAAAGAAAGGCATCCAATAAGAAGA
ACCAACCACTAAAAGTTGTGTACATATCGAATCCGATGAGAGTTCAAACCTGCGCGGCTAAGTTTCGAGCCTTGGTCCAAGAACTCACAGGCCGAGACGCCGAGTTCCCG
GACCCGGCTCGATGTCATTCGGCATCGAGCCTTCGAGAGACTAATGCTCAAAAGATACAAAAAGGGGACGAGAATGAAGAGTTGGTGCTTGATTTGGCCGCAATTGAGGA
TTTTAATGATGTTTTTCTTGGGGATTCGTATGATAGCTTGGAAGATATTTTCACCAGGGAAATTATGGACAAATTGGCTGCGTGACTCATAAACCTTCATCTAATTAGGT
AATTTTGAAGGTTTTTTTTTATCAATTTTATGTTCAAATAAAACCATCCTTACGAATGTAGATGGTAATGCAGTTCAACACCAAATTAATAGTTTGATTCTCATTATTTG
ACTCTTCTTTATTTGAGAGCACAGATTTGTGTTAAAAAAACTTTATGCTCAAGTAAAATATCATTGTATCTACATACACGC
Protein sequenceShow/hide protein sequence
MDSSLIASEVQEISKQATRKRKASNKKNQPLKVVYISNPMRVQTCAAKFRALVQELTGRDAEFPDPARCHSASSLRETNAQKIQKGDENEELVLDLAAIEDFNDVFLGDS
YDSLEDIFTREIMDKLAA