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Sed0012014 (gene) of Chayote v1 genome

Gene IDSed0012014
OrganismSechium edule (Chayote v1)
DescriptionNAD(P)H dehydrogenase subunit 5
Genome locationContig00347:66847..67783
RNA-Seq ExpressionSed0012014
SyntenySed0012014
Gene Ontology termsGO:0009535 - chloroplast thylakoid membrane (cellular component)
GO:0016021 - integral component of membrane (cellular component)
GO:0048038 - quinone binding (molecular function)
InterPro domainsNA


Homology Show/hide homology
GenBank top hitse value%identityAlignment
EXB56973.1 hypothetical protein L484_000755 [Morus notabilis]1.3e-1074Show/hide
Query:  EKRCNSSSFGNEHAEPNLLHVKPALFRSGKSYGFMKPCAMARIRSQSYLR
        +K  + +S      EPNLLHVKPALFRSGKSYGFMKPCAMARIRSQSY R
Subjt:  EKRCNSSSFGNEHAEPNLLHVKPALFRSGKSYGFMKPCAMARIRSQSYLR

KAB5511226.1 hypothetical protein DKX38_030151 [Salix brachista]5.2e-1243.28Show/hide
Query:  KSSILSLWIEEKGGS--------AGRGFWTLMSIRMNHPFHGGKSLPARQEDSKLQILSRKVVHFSGSRRGVETHKNSGMEMEKRC---NSSSFGNEHAE
        +S ILSLW EEK  S        A +  WTLMSIRMNHPFHGGKSLPARQEDSKLQILSR  ++  G    + T K+ G    K C    +++ G  H  
Subjt:  KSSILSLWIEEKGGS--------AGRGFWTLMSIRMNHPFHGGKSLPARQEDSKLQILSRKVVHFSGSRRGVETHKNSGMEMEKRC---NSSSFGNEHAE

Query:  PNLLHVKPALFRSGKSYGFMKPCAMARIRSQSYL
         +    +  +FR+G+      P   A I+    L
Subjt:  PNLLHVKPALFRSGKSYGFMKPCAMARIRSQSYL

KAF3583690.1 hypothetical protein F2Q69_00032187 [Brassica cretica]5.9e-0856.94Show/hide
Query:  MRLCTLRIGIHFLKDSGFRAL----------------GYLYDPIDCVKPAVATELGK-SSILSLWIEEKGGS
        M LCTLRIGIHFLKD GFRA                 GYL D IDCVKPAVATELGK    L  W E+  GS
Subjt:  MRLCTLRIGIHFLKDSGFRAL----------------GYLYDPIDCVKPAVATELGK-SSILSLWIEEKGGS

KVH99458.1 NADH:ubiquinone/plastoquinone oxidoreductase, chloroplast chain 5, C-terminal [Cynara cardunculus var. scolymus]5.9e-0877.5Show/hide
Query:  GYLYDPIDCVKPAVATELGKSSILSLWIEEKGGSAGRGFW
        GYLY+PIDCVKPAVA E GKS ILSLW EEKGG A RG +
Subjt:  GYLYDPIDCVKPAVATELGKSSILSLWIEEKGGSAGRGFW

PPS07120.1 hypothetical protein GOBAR_AA13525 [Gossypium barbadense]2.7e-1344.26Show/hide
Query:  MRLCTLRIGIHFLKDSGFRALGYLYDPIDCVKPAVATELGKSSI------------------------------LSLWIEEKGGSAGRGFWTLMSIRMNH
        M LCTLRIGIHFLKD GFRALGYLYDPI CVK A+ TE GKS I                               + W+ E   S     W  M IRMNH
Subjt:  MRLCTLRIGIHFLKDSGFRALGYLYDPIDCVKPAVATELGKSSI------------------------------LSLWIEEKGGSAGRGFWTLMSIRMNH

Query:  PFHGGKSLPARQEDSKLQILSR
         FHG  +L    +  K +ILS+
Subjt:  PFHGGKSLPARQEDSKLQILSR

TrEMBL top hitse value%identityAlignment
A0A0A0L231 Uncharacterized protein1.5e-8698.75Show/hide
Query:  MRLCTLRIGIHFLKDSGFRALGYLYDPIDCVKPAVATELGKSSILSLWIEEKGGSAGRGFWTLMSIRMNHPFHGGKSLPARQEDSKLQILSRKVVHFSGS
        MRLCTLRIGIHFLKDSGFRALGYLYDPIDCVKPAVATE GKSSI SLWIEEKGGSAGRGFWTLMSIRMNHPFHGGKSLPARQEDSKLQILSRKVVHFSGS
Subjt:  MRLCTLRIGIHFLKDSGFRALGYLYDPIDCVKPAVATELGKSSILSLWIEEKGGSAGRGFWTLMSIRMNHPFHGGKSLPARQEDSKLQILSRKVVHFSGS

Query:  RRGVETHKNSGMEMEKRCNSSSFGNEHAEPNLLHVKPALFRSGKSYGFMKPCAMARIRSQ
        RRGVETHKNSGMEMEKRCNSSSFGNEHAEPNLLHVKPALFRSGKSYGFMKPCAMARIRSQ
Subjt:  RRGVETHKNSGMEMEKRCNSSSFGNEHAEPNLLHVKPALFRSGKSYGFMKPCAMARIRSQ

A0A103XYX3 NAD(P)H dehydrogenase subunit 52.9e-0877.5Show/hide
Query:  GYLYDPIDCVKPAVATELGKSSILSLWIEEKGGSAGRGFW
        GYLY+PIDCVKPAVA E GKS ILSLW EEKGG A RG +
Subjt:  GYLYDPIDCVKPAVATELGKSSILSLWIEEKGGSAGRGFW

A0A2P5XUU9 Uncharacterized protein ycf681.3e-1344.26Show/hide
Query:  MRLCTLRIGIHFLKDSGFRALGYLYDPIDCVKPAVATELGKSSI------------------------------LSLWIEEKGGSAGRGFWTLMSIRMNH
        M LCTLRIGIHFLKD GFRALGYLYDPI CVK A+ TE GKS I                               + W+ E   S     W  M IRMNH
Subjt:  MRLCTLRIGIHFLKDSGFRALGYLYDPIDCVKPAVATELGKSSI------------------------------LSLWIEEKGGSAGRGFWTLMSIRMNH

Query:  PFHGGKSLPARQEDSKLQILSR
         FHG  +L    +  K +ILS+
Subjt:  PFHGGKSLPARQEDSKLQILSR

A0A5N5IXQ9 Uncharacterized protein ycf682.5e-1243.28Show/hide
Query:  KSSILSLWIEEKGGS--------AGRGFWTLMSIRMNHPFHGGKSLPARQEDSKLQILSRKVVHFSGSRRGVETHKNSGMEMEKRC---NSSSFGNEHAE
        +S ILSLW EEK  S        A +  WTLMSIRMNHPFHGGKSLPARQEDSKLQILSR  ++  G    + T K+ G    K C    +++ G  H  
Subjt:  KSSILSLWIEEKGGS--------AGRGFWTLMSIRMNHPFHGGKSLPARQEDSKLQILSRKVVHFSGSRRGVETHKNSGMEMEKRC---NSSSFGNEHAE

Query:  PNLLHVKPALFRSGKSYGFMKPCAMARIRSQSYL
         +    +  +FR+G+      P   A I+    L
Subjt:  PNLLHVKPALFRSGKSYGFMKPCAMARIRSQSYL

W9R592 Uncharacterized protein6.1e-1174Show/hide
Query:  EKRCNSSSFGNEHAEPNLLHVKPALFRSGKSYGFMKPCAMARIRSQSYLR
        +K  + +S      EPNLLHVKPALFRSGKSYGFMKPCAMARIRSQSY R
Subjt:  EKRCNSSSFGNEHAEPNLLHVKPALFRSGKSYGFMKPCAMARIRSQSYLR

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGCGGTTATGCACTCTTCGAATAGGAATCCATTTTCTGAAAGATTCTGGCTTTCGTGCTTTGGGATATCTATATGATCCGATTGATTGCGTAAAGCCCGCGGTAGCAAC
GGAACTGGGGAAATCCTCCATTTTGTCTCTGTGGATCGAGGAGAAAGGGGGCTCGGCGGGAAGAGGATTTTGGACTCTCATGTCGATCCGAATGAATCATCCTTTCCACG
GAGGTAAATCTTTGCCTGCTAGGCAAGAGGATAGCAAGTTACAAATTCTGTCGCGAAAAGTTGTTCATTTTTCGGGGTCTCGAAGGGGCGTGGAAACACATAAAAACTCT
GGAATGGAAATGGAAAAGAGATGTAACTCCAGTTCCTTCGGAAATGAACATGCTGAGCCAAATCTTCTTCATGTAAAACCTGCTTTATTTAGATCGGGAAAATCGTACGG
TTTTATGAAACCGTGTGCTATGGCTCGAATCCGTAGTCAATCCTATTTACGATAG
mRNA sequenceShow/hide mRNA sequence
ATGCGGTTATGCACTCTTCGAATAGGAATCCATTTTCTGAAAGATTCTGGCTTTCGTGCTTTGGGATATCTATATGATCCGATTGATTGCGTAAAGCCCGCGGTAGCAAC
GGAACTGGGGAAATCCTCCATTTTGTCTCTGTGGATCGAGGAGAAAGGGGGCTCGGCGGGAAGAGGATTTTGGACTCTCATGTCGATCCGAATGAATCATCCTTTCCACG
GAGGTAAATCTTTGCCTGCTAGGCAAGAGGATAGCAAGTTACAAATTCTGTCGCGAAAAGTTGTTCATTTTTCGGGGTCTCGAAGGGGCGTGGAAACACATAAAAACTCT
GGAATGGAAATGGAAAAGAGATGTAACTCCAGTTCCTTCGGAAATGAACATGCTGAGCCAAATCTTCTTCATGTAAAACCTGCTTTATTTAGATCGGGAAAATCGTACGG
TTTTATGAAACCGTGTGCTATGGCTCGAATCCGTAGTCAATCCTATTTACGATAG
Protein sequenceShow/hide protein sequence
MRLCTLRIGIHFLKDSGFRALGYLYDPIDCVKPAVATELGKSSILSLWIEEKGGSAGRGFWTLMSIRMNHPFHGGKSLPARQEDSKLQILSRKVVHFSGSRRGVETHKNS
GMEMEKRCNSSSFGNEHAEPNLLHVKPALFRSGKSYGFMKPCAMARIRSQSYLR