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Sed0012032 (gene) of Chayote v1 genome

Gene IDSed0012032
OrganismSechium edule (Chayote v1)
DescriptionNuclear transcription factor Y subunit B
Genome locationLG07:2593575..2594163
RNA-Seq ExpressionSed0012032
SyntenySed0012032
Gene Ontology termsGO:0045944 - positive regulation of transcription by RNA polymerase II (biological process)
GO:0016602 - CCAAT-binding factor complex (cellular component)
GO:0000978 - RNA polymerase II proximal promoter sequence-specific DNA binding (molecular function)
GO:0001228 - DNA-binding transcription activator activity, RNA polymerase II-specific (molecular function)
GO:0046982 - protein heterodimerization activity (molecular function)
InterPro domainsIPR003956 - Transcription factor, NFYB/HAP3, conserved site
IPR003958 - Transcription factor CBF/NF-Y/archaeal histone domain
IPR009072 - Histone-fold
IPR027113 - Transcription factor NFYB/HAP3


Homology Show/hide homology
GenBank top hitse value%identityAlignment
XP_008451614.1 PREDICTED: nuclear transcription factor Y subunit B-1 [Cucumis melo]9.5e-6687.16Show/hide
Query:  MDENTGKPERLVEFKYDFCTGGGGGVGGSTGGSSEEARSSGVGVVKEQDRFLPIANVGRIMKQILPPNAKISKEAKETMQECVSEFISFVTGEASEKCRE
        MDENTG PER VEFKYDF  GG  GVGGSTGGSSEEA +   GVVKEQDR LPIANVGRIMKQILPPNAKISKEAKETMQECVSEFISFVTGEAS+KC +
Subjt:  MDENTGKPERLVEFKYDFCTGGGGGVGGSTGGSSEEARSSGVGVVKEQDRFLPIANVGRIMKQILPPNAKISKEAKETMQECVSEFISFVTGEASEKCRE

Query:  EKRKTVNGDDICCALATLGFDDYAEPLKRYLVRYREMEGERAHQDKGC
        EKRKTVNGDDICCALATLGFDDYAEPL+RYLVRYR+MEGERA Q+KGC
Subjt:  EKRKTVNGDDICCALATLGFDDYAEPLKRYLVRYREMEGERAHQDKGC

XP_011659350.1 nuclear transcription factor Y subunit B-5 [Cucumis sativus]1.2e-6586.49Show/hide
Query:  MDENTGKPERLVEFKYDFCTGGGGGVGGSTGGSSEEARSSGVGVVKEQDRFLPIANVGRIMKQILPPNAKISKEAKETMQECVSEFISFVTGEASEKCRE
        MDENTG PER +EFKYDF  GG  GVGGSTGGSSEEA +   GVVKEQDR LPIANVGRIMKQILPPNAKISKEAKETMQECVSEFISFVTGEAS+KC +
Subjt:  MDENTGKPERLVEFKYDFCTGGGGGVGGSTGGSSEEARSSGVGVVKEQDRFLPIANVGRIMKQILPPNAKISKEAKETMQECVSEFISFVTGEASEKCRE

Query:  EKRKTVNGDDICCALATLGFDDYAEPLKRYLVRYREMEGERAHQDKGC
        EKRKTVNGDDICCALATLGFDDYAEPL+RYLVRYR+MEGERA Q+KGC
Subjt:  EKRKTVNGDDICCALATLGFDDYAEPLKRYLVRYREMEGERAHQDKGC

XP_022991512.1 nuclear transcription factor Y subunit B-1 [Cucurbita maxima]8.6e-6787.84Show/hide
Query:  MDENTGKPERLVEFKYDFCTGGGGGVGGSTGGSSEEARSSGVGVVKEQDRFLPIANVGRIMKQILPPNAKISKEAKETMQECVSEFISFVTGEASEKCRE
        MD+NT  PERLVEFKYDF TGGGGGVGGSTGGSSEEA S   G VKEQDR LPIANVGRIMKQILPPNAKISKEAKETMQECVSEFISFVTGEAS+KC +
Subjt:  MDENTGKPERLVEFKYDFCTGGGGGVGGSTGGSSEEARSSGVGVVKEQDRFLPIANVGRIMKQILPPNAKISKEAKETMQECVSEFISFVTGEASEKCRE

Query:  EKRKTVNGDDICCALATLGFDDYAEPLKRYLVRYREMEGERAHQDKGC
        EKRKTVNGDDICCALATLGFDDYAEPL+RYL+RYRE+EGERA Q+KGC
Subjt:  EKRKTVNGDDICCALATLGFDDYAEPLKRYLVRYREMEGERAHQDKGC

XP_023549145.1 nuclear transcription factor Y subunit B-1-like [Cucurbita pepo subsp. pepo]8.6e-6787.84Show/hide
Query:  MDENTGKPERLVEFKYDFCTGGGGGVGGSTGGSSEEARSSGVGVVKEQDRFLPIANVGRIMKQILPPNAKISKEAKETMQECVSEFISFVTGEASEKCRE
        MD+NT  PERLVEFKYDF TGGGGGVGGSTGGSSEEA S   G VKEQDR LPIANVGRIMKQILPPNAKISKEAKETMQECVSEFISFVTGEAS+KC +
Subjt:  MDENTGKPERLVEFKYDFCTGGGGGVGGSTGGSSEEARSSGVGVVKEQDRFLPIANVGRIMKQILPPNAKISKEAKETMQECVSEFISFVTGEASEKCRE

Query:  EKRKTVNGDDICCALATLGFDDYAEPLKRYLVRYREMEGERAHQDKGC
        EKRKTVNGDDICCALATLGFDDYAEPL+RYL+RYRE+EGERA Q+KGC
Subjt:  EKRKTVNGDDICCALATLGFDDYAEPLKRYLVRYREMEGERAHQDKGC

XP_038876756.1 nuclear transcription factor Y subunit B-1-like [Benincasa hispida]1.7e-6789.19Show/hide
Query:  MDENTGKPERLVEFKYDFCTGGGGGVGGSTGGSSEEARSSGVGVVKEQDRFLPIANVGRIMKQILPPNAKISKEAKETMQECVSEFISFVTGEASEKCRE
        MDENTG PERLVEFKYDF  GGG GVGGSTGGSSEEA +   GVVKEQDR LPIANVGRIMKQILPPNAKISKEAKETMQECVSEFISFVTGEAS+KC +
Subjt:  MDENTGKPERLVEFKYDFCTGGGGGVGGSTGGSSEEARSSGVGVVKEQDRFLPIANVGRIMKQILPPNAKISKEAKETMQECVSEFISFVTGEASEKCRE

Query:  EKRKTVNGDDICCALATLGFDDYAEPLKRYLVRYREMEGERAHQDKGC
        EKRKTVNGDDICCALATLGFDDYAEPL+RYLVRYREMEGERA Q+KGC
Subjt:  EKRKTVNGDDICCALATLGFDDYAEPLKRYLVRYREMEGERAHQDKGC

TrEMBL top hitse value%identityAlignment
A0A0A0K954 CBFD_NFYB_HMF domain-containing protein6.0e-6686.49Show/hide
Query:  MDENTGKPERLVEFKYDFCTGGGGGVGGSTGGSSEEARSSGVGVVKEQDRFLPIANVGRIMKQILPPNAKISKEAKETMQECVSEFISFVTGEASEKCRE
        MDENTG PER +EFKYDF  GG  GVGGSTGGSSEEA +   GVVKEQDR LPIANVGRIMKQILPPNAKISKEAKETMQECVSEFISFVTGEAS+KC +
Subjt:  MDENTGKPERLVEFKYDFCTGGGGGVGGSTGGSSEEARSSGVGVVKEQDRFLPIANVGRIMKQILPPNAKISKEAKETMQECVSEFISFVTGEASEKCRE

Query:  EKRKTVNGDDICCALATLGFDDYAEPLKRYLVRYREMEGERAHQDKGC
        EKRKTVNGDDICCALATLGFDDYAEPL+RYLVRYR+MEGERA Q+KGC
Subjt:  EKRKTVNGDDICCALATLGFDDYAEPLKRYLVRYREMEGERAHQDKGC

A0A1S3BT19 nuclear transcription factor Y subunit B-14.6e-6687.16Show/hide
Query:  MDENTGKPERLVEFKYDFCTGGGGGVGGSTGGSSEEARSSGVGVVKEQDRFLPIANVGRIMKQILPPNAKISKEAKETMQECVSEFISFVTGEASEKCRE
        MDENTG PER VEFKYDF  GG  GVGGSTGGSSEEA +   GVVKEQDR LPIANVGRIMKQILPPNAKISKEAKETMQECVSEFISFVTGEAS+KC +
Subjt:  MDENTGKPERLVEFKYDFCTGGGGGVGGSTGGSSEEARSSGVGVVKEQDRFLPIANVGRIMKQILPPNAKISKEAKETMQECVSEFISFVTGEASEKCRE

Query:  EKRKTVNGDDICCALATLGFDDYAEPLKRYLVRYREMEGERAHQDKGC
        EKRKTVNGDDICCALATLGFDDYAEPL+RYLVRYR+MEGERA Q+KGC
Subjt:  EKRKTVNGDDICCALATLGFDDYAEPLKRYLVRYREMEGERAHQDKGC

A0A5A7VLD2 Nuclear transcription factor Y subunit B-12.4e-6287.23Show/hide
Query:  PERLVEFKYDFCTGGGGGVGGSTGGSSEEARSSGVGVVKEQDRFLPIANVGRIMKQILPPNAKISKEAKETMQECVSEFISFVTGEASEKCREEKRKTVN
        PER VEFKYDF  GG  GVGGSTGGSSEEA +   GVVKEQDR LPIANVGRIMKQILPPNAKISKEAKETMQECVSEFISFVTGEAS+KC +EKRKTVN
Subjt:  PERLVEFKYDFCTGGGGGVGGSTGGSSEEARSSGVGVVKEQDRFLPIANVGRIMKQILPPNAKISKEAKETMQECVSEFISFVTGEASEKCREEKRKTVN

Query:  GDDICCALATLGFDDYAEPLKRYLVRYREMEGERAHQDKGC
        GDDICCALATLGFDDYAEPL+RYLVRYR+MEGERA Q+KGC
Subjt:  GDDICCALATLGFDDYAEPLKRYLVRYREMEGERAHQDKGC

A0A6J1GM85 nuclear transcription factor Y subunit B-1-like1.0e-6587.25Show/hide
Query:  MDENTGKPERLVEFKYDFCTGGG-GGVGGSTGGSSEEARSSGVGVVKEQDRFLPIANVGRIMKQILPPNAKISKEAKETMQECVSEFISFVTGEASEKCR
        MD+NT  PERLVEFKYDF TGGG GGVGGSTGGSSEEA S   G VKEQDR LPIANVGRIMKQILPPNAKISKEAKETMQECVSEFISFVTGEAS+KC 
Subjt:  MDENTGKPERLVEFKYDFCTGGG-GGVGGSTGGSSEEARSSGVGVVKEQDRFLPIANVGRIMKQILPPNAKISKEAKETMQECVSEFISFVTGEASEKCR

Query:  EEKRKTVNGDDICCALATLGFDDYAEPLKRYLVRYREMEGERAHQDKGC
        +EKRKTVNGDDICCALATLGFDDYAEPL+RYL+RYRE+EGERA Q+KGC
Subjt:  EEKRKTVNGDDICCALATLGFDDYAEPLKRYLVRYREMEGERAHQDKGC

A0A6J1JM11 nuclear transcription factor Y subunit B-14.2e-6787.84Show/hide
Query:  MDENTGKPERLVEFKYDFCTGGGGGVGGSTGGSSEEARSSGVGVVKEQDRFLPIANVGRIMKQILPPNAKISKEAKETMQECVSEFISFVTGEASEKCRE
        MD+NT  PERLVEFKYDF TGGGGGVGGSTGGSSEEA S   G VKEQDR LPIANVGRIMKQILPPNAKISKEAKETMQECVSEFISFVTGEAS+KC +
Subjt:  MDENTGKPERLVEFKYDFCTGGGGGVGGSTGGSSEEARSSGVGVVKEQDRFLPIANVGRIMKQILPPNAKISKEAKETMQECVSEFISFVTGEASEKCRE

Query:  EKRKTVNGDDICCALATLGFDDYAEPLKRYLVRYREMEGERAHQDKGC
        EKRKTVNGDDICCALATLGFDDYAEPL+RYL+RYRE+EGERA Q+KGC
Subjt:  EKRKTVNGDDICCALATLGFDDYAEPLKRYLVRYREMEGERAHQDKGC

SwissProt top hitse value%identityAlignment
O82248 Nuclear transcription factor Y subunit B-51.1e-4079.05Show/hide
Query:  VVKEQDRFLPIANVGRIMKQILPPNAKISKEAKETMQECVSEFISFVTGEASEKCREEKRKTVNGDDICCALATLGFDDYAEPLKRYLVRYREMEGERA-
        +VKEQDR LPIANVGRIMK ILP NAK+SKEAKETMQECVSEFISFVTGEAS+KC +EKRKTVNGDDIC A+A LGFDDYA  LK+YL RYR +EGE+  
Subjt:  VVKEQDRFLPIANVGRIMKQILPPNAKISKEAKETMQECVSEFISFVTGEASEKCREEKRKTVNGDDICCALATLGFDDYAEPLKRYLVRYREMEGERA-

Query:  HQDKG
        H  KG
Subjt:  HQDKG

Q0J7P4 Nuclear transcription factor Y subunit B-116.7e-3867.77Show/hide
Query:  GGGGVGGSTGGSSEEARSSGVGVVKEQDRFLPIANVGRIMKQILPPNAKISKEAKETMQECVSEFISFVTGEASEKCREEKRKTVNGDDICCALATLGFD
        GGGG G S G         G    KEQDRFLPIANV RIMK+ LP NAKISKE+KET+QECVSEFISFVTGEAS+KC+ EKRKT+NGDD+  A+ TLGF+
Subjt:  GGGGVGGSTGGSSEEARSSGVGVVKEQDRFLPIANVGRIMKQILPPNAKISKEAKETMQECVSEFISFVTGEASEKCREEKRKTVNGDDICCALATLGFD

Query:  DYAEPLKRYLVRYREMEGERA
         Y  PLK YL RYRE EGE+A
Subjt:  DYAEPLKRYLVRYREMEGERA

Q60EQ4 Nuclear transcription factor Y subunit B-36.7e-3865.83Show/hide
Query:  GGGGGVGGSTGGSSEEARSSGVGVVKEQDRFLPIANVGRIMKQILPPNAKISKEAKETMQECVSEFISFVTGEASEKCREEKRKTVNGDDICCALATLGF
        GGGGG GG  GG          G V+EQDRFLPIAN+ RIMK+ +P N KI+K+AKET+QECVSEFISF+T EAS+KC+ EKRKT+NGDD+  A+ATLGF
Subjt:  GGGGGVGGSTGGSSEEARSSGVGVVKEQDRFLPIANVGRIMKQILPPNAKISKEAKETMQECVSEFISFVTGEASEKCREEKRKTVNGDDICCALATLGF

Query:  DDYAEPLKRYLVRYREMEGE
        +DY EPLK YL +YREMEG+
Subjt:  DDYAEPLKRYLVRYREMEGE

Q67XJ2 Nuclear transcription factor Y subunit B-101.3e-3865.62Show/hide
Query:  TGGGGGVGGSTGGSSEEARSSGVGVVKEQDRFLPIANVGRIMKQILPPNAKISKEAKETMQECVSEFISFVTGEASEKCREEKRKTVNGDDICCALATLG
        TGGGGG G    G  +  RS     V+EQDRFLPIAN+ RIMK+ LP N KI+K+AKETMQECVSEFISFVT EAS+KC+ EKRKT+NGDD+  A+ATLG
Subjt:  TGGGGGVGGSTGGSSEEARSSGVGVVKEQDRFLPIANVGRIMKQILPPNAKISKEAKETMQECVSEFISFVTGEASEKCREEKRKTVNGDDICCALATLG

Query:  FDDYAEPLKRYLVRYREMEGERAHQDKG
        F+DY +PLK YL+RYREMEG+     KG
Subjt:  FDDYAEPLKRYLVRYREMEGERAHQDKG

Q9FGJ3 Nuclear transcription factor Y subunit B-22.3e-3869.57Show/hide
Query:  GGSTGGSSEEARSSGVGVVKEQDRFLPIANVGRIMKQILPPNAKISKEAKETMQECVSEFISFVTGEASEKCREEKRKTVNGDDICCALATLGFDDYAEP
        GG   G+++  +SS     +EQDRFLPIANV RIMK+ LP NAKISK+AKETMQECVSEFISFVTGEAS+KC++EKRKT+NGDD+  A+ TLGF+DY EP
Subjt:  GGSTGGSSEEARSSGVGVVKEQDRFLPIANVGRIMKQILPPNAKISKEAKETMQECVSEFISFVTGEASEKCREEKRKTVNGDDICCALATLGFDDYAEP

Query:  LKRYLVRYREMEGER
        LK YL R+RE+EGER
Subjt:  LKRYLVRYREMEGER

Arabidopsis top hitse value%identityAlignment
AT2G13570.1 nuclear factor Y, subunit B71.8e-3863.2Show/hide
Query:  GGGGVGGSTGGSSEEARSSGVGVVKEQDRFLPIANVGRIMKQILPPNAKISKEAKETMQECVSEFISFVTGEASEKCREEKRKTVNGDDICCALATLGFD
        G  GV  +  GS     ++     KEQDRFLPIANVGRIMK++LP N KISK+AKET+QECVSEFISFVTGEAS+KC+ EKRKT+NGDDI  A+ TLGF+
Subjt:  GGGGVGGSTGGSSEEARSSGVGVVKEQDRFLPIANVGRIMKQILPPNAKISKEAKETMQECVSEFISFVTGEASEKCREEKRKTVNGDDICCALATLGFD

Query:  DYAEPLKRYLVRYREMEGERAHQDK
        DY  PLK YL +YR+ EGE+ +  K
Subjt:  DYAEPLKRYLVRYREMEGERAHQDK

AT2G38880.2 nuclear factor Y, subunit B12.4e-3863.11Show/hide
Query:  GVGGSTGGSSEEARSSGVGVVKEQDRFLPIANVGRIMKQILPPNAKISKEAKETMQECVSEFISFVTGEASEKCREEKRKTVNGDDICCALATLGFDDYA
        G GG +GGS           V+EQDR+LPIAN+ RIMK+ LPPN KI K+AK+T+QECVSEFISF+T EAS+KC++EKRKTVNGDD+  A+ATLGF+DY 
Subjt:  GVGGSTGGSSEEARSSGVGVVKEQDRFLPIANVGRIMKQILPPNAKISKEAKETMQECVSEFISFVTGEASEKCREEKRKTVNGDDICCALATLGFDDYA

Query:  EPLKRYLVRYREMEGERAHQDK
        EPLK YL RYRE+EG+     K
Subjt:  EPLKRYLVRYREMEGERAHQDK

AT2G47810.1 nuclear factor Y, subunit B57.8e-4279.05Show/hide
Query:  VVKEQDRFLPIANVGRIMKQILPPNAKISKEAKETMQECVSEFISFVTGEASEKCREEKRKTVNGDDICCALATLGFDDYAEPLKRYLVRYREMEGERA-
        +VKEQDR LPIANVGRIMK ILP NAK+SKEAKETMQECVSEFISFVTGEAS+KC +EKRKTVNGDDIC A+A LGFDDYA  LK+YL RYR +EGE+  
Subjt:  VVKEQDRFLPIANVGRIMKQILPPNAKISKEAKETMQECVSEFISFVTGEASEKCREEKRKTVNGDDICCALATLGFDDYAEPLKRYLVRYREMEGERA-

Query:  HQDKG
        H  KG
Subjt:  HQDKG

AT3G53340.1 nuclear factor Y, subunit B109.6e-4065.62Show/hide
Query:  TGGGGGVGGSTGGSSEEARSSGVGVVKEQDRFLPIANVGRIMKQILPPNAKISKEAKETMQECVSEFISFVTGEASEKCREEKRKTVNGDDICCALATLG
        TGGGGG G    G  +  RS     V+EQDRFLPIAN+ RIMK+ LP N KI+K+AKETMQECVSEFISFVT EAS+KC+ EKRKT+NGDD+  A+ATLG
Subjt:  TGGGGGVGGSTGGSSEEARSSGVGVVKEQDRFLPIANVGRIMKQILPPNAKISKEAKETMQECVSEFISFVTGEASEKCREEKRKTVNGDDICCALATLG

Query:  FDDYAEPLKRYLVRYREMEGERAHQDKG
        F+DY +PLK YL+RYREMEG+     KG
Subjt:  FDDYAEPLKRYLVRYREMEGERAHQDKG

AT5G47640.1 nuclear factor Y, subunit B21.6e-3969.57Show/hide
Query:  GGSTGGSSEEARSSGVGVVKEQDRFLPIANVGRIMKQILPPNAKISKEAKETMQECVSEFISFVTGEASEKCREEKRKTVNGDDICCALATLGFDDYAEP
        GG   G+++  +SS     +EQDRFLPIANV RIMK+ LP NAKISK+AKETMQECVSEFISFVTGEAS+KC++EKRKT+NGDD+  A+ TLGF+DY EP
Subjt:  GGSTGGSSEEARSSGVGVVKEQDRFLPIANVGRIMKQILPPNAKISKEAKETMQECVSEFISFVTGEASEKCREEKRKTVNGDDICCALATLGFDDYAEP

Query:  LKRYLVRYREMEGER
        LK YL R+RE+EGER
Subjt:  LKRYLVRYREMEGER


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGGATGAAAACACAGGCAAACCAGAGAGATTAGTAGAATTTAAGTATGATTTCTGCACCGGAGGCGGCGGAGGAGTCGGTGGCAGCACCGGTGGCTCGAGCGAGGAAGC
GCGTAGCAGTGGAGTCGGGGTCGTAAAAGAGCAGGATCGGTTTCTTCCCATAGCAAACGTGGGGAGGATCATGAAGCAAATTCTTCCTCCAAACGCTAAAATCTCCAAGG
AAGCCAAGGAAACTATGCAAGAATGTGTGTCGGAGTTCATCAGCTTCGTCACGGGCGAGGCGTCGGAGAAGTGCCGCGAGGAGAAGAGGAAGACTGTTAATGGTGATGAC
ATTTGCTGTGCCTTGGCTACACTTGGATTTGATGATTATGCTGAGCCTTTGAAGAGGTATTTAGTTAGGTATAGAGAAATGGAAGGGGAGAGAGCTCACCAAGATAAGGG
ATGTTGA
mRNA sequenceShow/hide mRNA sequence
GGATCACTCTCCAATAGACATCATCAATATATATAAGTGGGAGAGACAAGTTTGGGGCACTTGAAAGGAGCAACGTGTCTACGTTTTAGAGGATAGAAAAAGCTTCTTTT
TTTTTTCCTCCTTTCCCTTTCTCTTTTTTAGATGGATGAAAACACAGGCAAACCAGAGAGATTAGTAGAATTTAAGTATGATTTCTGCACCGGAGGCGGCGGAGGAGTCG
GTGGCAGCACCGGTGGCTCGAGCGAGGAAGCGCGTAGCAGTGGAGTCGGGGTCGTAAAAGAGCAGGATCGGTTTCTTCCCATAGCAAACGTGGGGAGGATCATGAAGCAA
ATTCTTCCTCCAAACGCTAAAATCTCCAAGGAAGCCAAGGAAACTATGCAAGAATGTGTGTCGGAGTTCATCAGCTTCGTCACGGGCGAGGCGTCGGAGAAGTGCCGCGA
GGAGAAGAGGAAGACTGTTAATGGTGATGACATTTGCTGTGCCTTGGCTACACTTGGATTTGATGATTATGCTGAGCCTTTGAAGAGGTATTTAGTTAGGTATAGAGAAA
TGGAAGGGGAGAGAGCTCACCAAGATAAGGGATGTTGAG
Protein sequenceShow/hide protein sequence
MDENTGKPERLVEFKYDFCTGGGGGVGGSTGGSSEEARSSGVGVVKEQDRFLPIANVGRIMKQILPPNAKISKEAKETMQECVSEFISFVTGEASEKCREEKRKTVNGDD
ICCALATLGFDDYAEPLKRYLVRYREMEGERAHQDKGC