| GenBank top hits | e value | %identity | Alignment |
|---|
| KAA0035480.1 pol protein [Cucumis melo var. makuwa] | 8.0e-63 | 42.86 | Show/hide |
Query: RCLTCRQVKALEQRPPVCCTVPSVPQWKWEEISMDFIAGLPRTPRKFTQIWVIVDRLTKSAHFIP-ETLIPWNKGAACFWSEIIRYHGVPVRIVSHRDSR
RCL C+QVKAL Q+P SVP+WKWE +SMDFI GLPRT R FT IWV+VDRLTKSAHF+P ++ +K A + SEI+R HGVPV IVS RD+R
Subjt: RCLTCRQVKALEQRPPVCCTVPSVPQWKWEEISMDFIAGLPRTPRKFTQIWVIVDRLTKSAHFIP-ETLIPWNKGAACFWSEIIRYHGVPVRIVSHRDSR
Query: FTSRFSRALR-------------------KVERVNQILEDMLRACVLDFPGAWD----------------------------------------------
FTS+F + L+ + ER+NQ+LEDMLRAC L+FPG+WD
Subjt: FTSRFSRALR-------------------KVERVNQILEDMLRACVLDFPGAWD----------------------------------------------
Query: ---------QDSDRWSLPITTI-----------IDRRFDGSIR-----GLVRQALSVPVFGKRKVHSVFHVSMLRQYVPDPSHIVDFEPLQLNEDLSFEE
+ D+ L + + + RF G G V L++P VH VFHVSMLR+YV DPSH+VD+EPL+++E+LS+ E
Subjt: ---------QDSDRWSLPITTI-----------IDRRFDGSIR-----GLVRQALSVPVFGKRKVHSVFHVSMLRQYVPDPSHIVDFEPLQLNEDLSFEE
Query: KPVGILAFETKTLRNREIRLVKVQWRSQSSEEATWEREDEMRL
+PV +LA E K LRN+EI LVKV WR+ EEATWERED+MR+
Subjt: KPVGILAFETKTLRNREIRLVKVQWRSQSSEEATWEREDEMRL
|
|
| KAA0040695.1 pol protein [Cucumis melo var. makuwa] | 3.8e-65 | 43.31 | Show/hide |
Query: RCLTCRQVKALEQRPPVCCTVPSVPQWKWEEISMDFIAGLPRTPRKFTQIWVIVDRLTKSAHFIP-ETLIPWNKGAACFWSEIIRYHGVPVRIVSHRDSR
RCL C+QVKA Q+P S+P+WKWE +SMDFI GLPRT R FT IWV+VDRLTK AHF+P ++ +K A + SEI+R HGVPV IVS+RD+R
Subjt: RCLTCRQVKALEQRPPVCCTVPSVPQWKWEEISMDFIAGLPRTPRKFTQIWVIVDRLTKSAHFIP-ETLIPWNKGAACFWSEIIRYHGVPVRIVSHRDSR
Query: FTSRFSRALR-------------------KVERVNQILEDMLRACVLDFPGAWD----------------------------------------------
FTS+F + L+ + ER+NQ+LEDMLRAC L+FPG+WD
Subjt: FTSRFSRALR-------------------KVERVNQILEDMLRACVLDFPGAWD----------------------------------------------
Query: ---QDSDRWSLPITTI-----------IDRRFDGSIR-----GLVRQALSVPVFGKRKVHSVFHVSMLRQYVPDPSHIVDFEPLQLNEDLSFEEKPVGIL
+ D+ L + + + RF G G V L +P VH V HVSMLR+YVPDPSH+VD+EPL+++E+LS+ E+PV +L
Subjt: ---QDSDRWSLPITTI-----------IDRRFDGSIR-----GLVRQALSVPVFGKRKVHSVFHVSMLRQYVPDPSHIVDFEPLQLNEDLSFEEKPVGIL
Query: AFETKTLRNREIRLVKVQWRSQSSEEATWEREDEMRLHHPELFQ
A E KTLRN+EI LVKV WR+ EEATWERED+MR +PELF+
Subjt: AFETKTLRNREIRLVKVQWRSQSSEEATWEREDEMRLHHPELFQ
|
|
| KAA0051051.1 reverse transcriptase [Cucumis melo var. makuwa] | 2.7e-63 | 43.07 | Show/hide |
Query: RCLTCRQVKALEQRPPVCCTVPSVPQWKWEEISMDFIAGLPRTPRKFTQIWVIVDRLTKSAHFIP-ETLIPWNKGAACFWSEIIRYHGVPVRIVSHRDSR
RCL C+QVKA Q+P S+P+WKWE +SMDFI GLPRT R FT IWV+VDRLTKSAHF+P ++ +K A + SEI+R HGVP+ IVS RD+
Subjt: RCLTCRQVKALEQRPPVCCTVPSVPQWKWEEISMDFIAGLPRTPRKFTQIWVIVDRLTKSAHFIP-ETLIPWNKGAACFWSEIIRYHGVPVRIVSHRDSR
Query: FTSRFSRALR-------------------KVERVNQILEDMLRACVLDFPGAWDQD--------------------------------------------
FTS+F + L+ + ER+NQ+LEDMLRAC L+FPG +
Subjt: FTSRFSRALR-------------------KVERVNQILEDMLRACVLDFPGAWDQD--------------------------------------------
Query: SDRWSLPITTI-----------IDRRFDGSIR-----GLVRQALSVPVFGKRKVHSVFHVSMLRQYVPDPSHIVDFEPLQLNEDLSFEEKPVGILAFETK
D+ L + + + RF G G V L++P VH VFHVSMLR+YVPDPSH+VD+EPL+++E+LS+ E+PV +LA E K
Subjt: SDRWSLPITTI-----------IDRRFDGSIR-----GLVRQALSVPVFGKRKVHSVFHVSMLRQYVPDPSHIVDFEPLQLNEDLSFEEKPVGILAFETK
Query: TLRNREIRLVKVQWRSQSSEEATWEREDEMRLHHPELFQ
TLRN+EI LVKV WR+ EEATWERED+MR +P+LF+
Subjt: TLRNREIRLVKVQWRSQSSEEATWEREDEMRLHHPELFQ
|
|
| KAA0053631.1 ty3-gypsy retrotransposon protein [Cucumis melo var. makuwa] | 1.3e-65 | 42.86 | Show/hide |
Query: RCLTCRQVKALEQRPPVCCTVPSVPQWKWEEISMDFIAGLPRTPRKFTQIWVIVDRLTKSAHFIP-ETLIPWNKGAACFWSEIIRYHGVPVRIVSHRDSR
+CL C+QVKA Q+P S+P+WKWE +SMDFI GLPRT R FT IWV+VDRLTKSAHF+P ++ +K A + SEI+R HGVPV IVS RD+R
Subjt: RCLTCRQVKALEQRPPVCCTVPSVPQWKWEEISMDFIAGLPRTPRKFTQIWVIVDRLTKSAHFIP-ETLIPWNKGAACFWSEIIRYHGVPVRIVSHRDSR
Query: FTSRFSRALR-------------------KVERVNQILEDMLRACVLDFPGAWD----------------------------------------------
FTS+F + L+ + ER+NQ+LEDMLRAC L+FPG+WD
Subjt: FTSRFSRALR-------------------KVERVNQILEDMLRACVLDFPGAWD----------------------------------------------
Query: ---------QDSDRWSLPITTI-----------IDRRFDGSIR-----GLVRQALSVPVFGKRKVHSVFHVSMLRQYVPDPSHIVDFEPLQLNEDLSFEE
+ D+ L + + + RF G G V L++P VH VFHVSMLR+YVPDPSH+VD+EPL+++E+LS+ E
Subjt: ---------QDSDRWSLPITTI-----------IDRRFDGSIR-----GLVRQALSVPVFGKRKVHSVFHVSMLRQYVPDPSHIVDFEPLQLNEDLSFEE
Query: KPVGILAFETKTLRNREIRLVKVQWRSQSSEEATWEREDEMRLHHPELFQ
+PV +LA E KTLRN+EI LVKV WR+ EEATWERED+MR +PELF+
Subjt: KPVGILAFETKTLRNREIRLVKVQWRSQSSEEATWEREDEMRLHHPELFQ
|
|
| TYK01415.1 ty3-gypsy retrotransposon protein [Cucumis melo var. makuwa] | 1.6e-63 | 42 | Show/hide |
Query: RCLTCRQVKALEQRPPVCCTVPSVPQWKWEEISMDFIAGLPRTPRKFTQIWVIVDRLTKSAHFIP-ETLIPWNKGAACFWSEIIRYHGVPVRIVSHRDSR
+CL C+QVKA Q+P S+P+WKWE +SMDFI GLPRT R FT IWV+VDRLTKSAHF+P ++ +K A + SEI+R HGVPV I+S RD+R
Subjt: RCLTCRQVKALEQRPPVCCTVPSVPQWKWEEISMDFIAGLPRTPRKFTQIWVIVDRLTKSAHFIP-ETLIPWNKGAACFWSEIIRYHGVPVRIVSHRDSR
Query: FTSRFSRALR-------------------KVERVNQILEDMLRACVLDFPGAWDQD--------------------------------------------
FTS+F + L+ + ER+NQ+LEDMLRAC L+F G+WD
Subjt: FTSRFSRALR-------------------KVERVNQILEDMLRACVLDFPGAWDQD--------------------------------------------
Query: -----------SDRWSLPITTI-----------IDRRFDGSIR-----GLVRQALSVPVFGKRKVHSVFHVSMLRQYVPDPSHIVDFEPLQLNEDLSFEE
D+ L + + + RF G G V L++P VH VFHVSMLR+YVPDPSH+VD+EPL+++E+LS+ E
Subjt: -----------SDRWSLPITTI-----------IDRRFDGSIR-----GLVRQALSVPVFGKRKVHSVFHVSMLRQYVPDPSHIVDFEPLQLNEDLSFEE
Query: KPVGILAFETKTLRNREIRLVKVQWRSQSSEEATWEREDEMRLHHPELFQ
+PV +LA E K LRNREI LVKV WR+ EEATWE+ED+MR +PELF+
Subjt: KPVGILAFETKTLRNREIRLVKVQWRSQSSEEATWEREDEMRLHHPELFQ
|
|
| TrEMBL top hits | e value | %identity | Alignment |
|---|
| A0A5A7SWR6 Reverse transcriptase | 3.9e-63 | 42.86 | Show/hide |
Query: RCLTCRQVKALEQRPPVCCTVPSVPQWKWEEISMDFIAGLPRTPRKFTQIWVIVDRLTKSAHFIP-ETLIPWNKGAACFWSEIIRYHGVPVRIVSHRDSR
RCL C+QVKAL Q+P SVP+WKWE +SMDFI GLPRT R FT IWV+VDRLTKSAHF+P ++ +K A + SEI+R HGVPV IVS RD+R
Subjt: RCLTCRQVKALEQRPPVCCTVPSVPQWKWEEISMDFIAGLPRTPRKFTQIWVIVDRLTKSAHFIP-ETLIPWNKGAACFWSEIIRYHGVPVRIVSHRDSR
Query: FTSRFSRALR-------------------KVERVNQILEDMLRACVLDFPGAWD----------------------------------------------
FTS+F + L+ + ER+NQ+LEDMLRAC L+FPG+WD
Subjt: FTSRFSRALR-------------------KVERVNQILEDMLRACVLDFPGAWD----------------------------------------------
Query: ---------QDSDRWSLPITTI-----------IDRRFDGSIR-----GLVRQALSVPVFGKRKVHSVFHVSMLRQYVPDPSHIVDFEPLQLNEDLSFEE
+ D+ L + + + RF G G V L++P VH VFHVSMLR+YV DPSH+VD+EPL+++E+LS+ E
Subjt: ---------QDSDRWSLPITTI-----------IDRRFDGSIR-----GLVRQALSVPVFGKRKVHSVFHVSMLRQYVPDPSHIVDFEPLQLNEDLSFEE
Query: KPVGILAFETKTLRNREIRLVKVQWRSQSSEEATWEREDEMRL
+PV +LA E K LRN+EI LVKV WR+ EEATWERED+MR+
Subjt: KPVGILAFETKTLRNREIRLVKVQWRSQSSEEATWEREDEMRL
|
|
| A0A5A7TGX4 Reverse transcriptase | 1.8e-65 | 43.31 | Show/hide |
Query: RCLTCRQVKALEQRPPVCCTVPSVPQWKWEEISMDFIAGLPRTPRKFTQIWVIVDRLTKSAHFIP-ETLIPWNKGAACFWSEIIRYHGVPVRIVSHRDSR
RCL C+QVKA Q+P S+P+WKWE +SMDFI GLPRT R FT IWV+VDRLTK AHF+P ++ +K A + SEI+R HGVPV IVS+RD+R
Subjt: RCLTCRQVKALEQRPPVCCTVPSVPQWKWEEISMDFIAGLPRTPRKFTQIWVIVDRLTKSAHFIP-ETLIPWNKGAACFWSEIIRYHGVPVRIVSHRDSR
Query: FTSRFSRALR-------------------KVERVNQILEDMLRACVLDFPGAWD----------------------------------------------
FTS+F + L+ + ER+NQ+LEDMLRAC L+FPG+WD
Subjt: FTSRFSRALR-------------------KVERVNQILEDMLRACVLDFPGAWD----------------------------------------------
Query: ---QDSDRWSLPITTI-----------IDRRFDGSIR-----GLVRQALSVPVFGKRKVHSVFHVSMLRQYVPDPSHIVDFEPLQLNEDLSFEEKPVGIL
+ D+ L + + + RF G G V L +P VH V HVSMLR+YVPDPSH+VD+EPL+++E+LS+ E+PV +L
Subjt: ---QDSDRWSLPITTI-----------IDRRFDGSIR-----GLVRQALSVPVFGKRKVHSVFHVSMLRQYVPDPSHIVDFEPLQLNEDLSFEEKPVGIL
Query: AFETKTLRNREIRLVKVQWRSQSSEEATWEREDEMRLHHPELFQ
A E KTLRN+EI LVKV WR+ EEATWERED+MR +PELF+
Subjt: AFETKTLRNREIRLVKVQWRSQSSEEATWEREDEMRLHHPELFQ
|
|
| A0A5A7UC07 Reverse transcriptase | 1.3e-63 | 43.07 | Show/hide |
Query: RCLTCRQVKALEQRPPVCCTVPSVPQWKWEEISMDFIAGLPRTPRKFTQIWVIVDRLTKSAHFIP-ETLIPWNKGAACFWSEIIRYHGVPVRIVSHRDSR
RCL C+QVKA Q+P S+P+WKWE +SMDFI GLPRT R FT IWV+VDRLTKSAHF+P ++ +K A + SEI+R HGVP+ IVS RD+
Subjt: RCLTCRQVKALEQRPPVCCTVPSVPQWKWEEISMDFIAGLPRTPRKFTQIWVIVDRLTKSAHFIP-ETLIPWNKGAACFWSEIIRYHGVPVRIVSHRDSR
Query: FTSRFSRALR-------------------KVERVNQILEDMLRACVLDFPGAWDQD--------------------------------------------
FTS+F + L+ + ER+NQ+LEDMLRAC L+FPG +
Subjt: FTSRFSRALR-------------------KVERVNQILEDMLRACVLDFPGAWDQD--------------------------------------------
Query: SDRWSLPITTI-----------IDRRFDGSIR-----GLVRQALSVPVFGKRKVHSVFHVSMLRQYVPDPSHIVDFEPLQLNEDLSFEEKPVGILAFETK
D+ L + + + RF G G V L++P VH VFHVSMLR+YVPDPSH+VD+EPL+++E+LS+ E+PV +LA E K
Subjt: SDRWSLPITTI-----------IDRRFDGSIR-----GLVRQALSVPVFGKRKVHSVFHVSMLRQYVPDPSHIVDFEPLQLNEDLSFEEKPVGILAFETK
Query: TLRNREIRLVKVQWRSQSSEEATWEREDEMRLHHPELFQ
TLRN+EI LVKV WR+ EEATWERED+MR +P+LF+
Subjt: TLRNREIRLVKVQWRSQSSEEATWEREDEMRLHHPELFQ
|
|
| A0A5A7UJG5 Ty3-gypsy retrotransposon protein | 6.4e-66 | 42.86 | Show/hide |
Query: RCLTCRQVKALEQRPPVCCTVPSVPQWKWEEISMDFIAGLPRTPRKFTQIWVIVDRLTKSAHFIP-ETLIPWNKGAACFWSEIIRYHGVPVRIVSHRDSR
+CL C+QVKA Q+P S+P+WKWE +SMDFI GLPRT R FT IWV+VDRLTKSAHF+P ++ +K A + SEI+R HGVPV IVS RD+R
Subjt: RCLTCRQVKALEQRPPVCCTVPSVPQWKWEEISMDFIAGLPRTPRKFTQIWVIVDRLTKSAHFIP-ETLIPWNKGAACFWSEIIRYHGVPVRIVSHRDSR
Query: FTSRFSRALR-------------------KVERVNQILEDMLRACVLDFPGAWD----------------------------------------------
FTS+F + L+ + ER+NQ+LEDMLRAC L+FPG+WD
Subjt: FTSRFSRALR-------------------KVERVNQILEDMLRACVLDFPGAWD----------------------------------------------
Query: ---------QDSDRWSLPITTI-----------IDRRFDGSIR-----GLVRQALSVPVFGKRKVHSVFHVSMLRQYVPDPSHIVDFEPLQLNEDLSFEE
+ D+ L + + + RF G G V L++P VH VFHVSMLR+YVPDPSH+VD+EPL+++E+LS+ E
Subjt: ---------QDSDRWSLPITTI-----------IDRRFDGSIR-----GLVRQALSVPVFGKRKVHSVFHVSMLRQYVPDPSHIVDFEPLQLNEDLSFEE
Query: KPVGILAFETKTLRNREIRLVKVQWRSQSSEEATWEREDEMRLHHPELFQ
+PV +LA E KTLRN+EI LVKV WR+ EEATWERED+MR +PELF+
Subjt: KPVGILAFETKTLRNREIRLVKVQWRSQSSEEATWEREDEMRLHHPELFQ
|
|
| A0A5D3BQF6 Ty3-gypsy retrotransposon protein | 7.8e-64 | 42 | Show/hide |
Query: RCLTCRQVKALEQRPPVCCTVPSVPQWKWEEISMDFIAGLPRTPRKFTQIWVIVDRLTKSAHFIP-ETLIPWNKGAACFWSEIIRYHGVPVRIVSHRDSR
+CL C+QVKA Q+P S+P+WKWE +SMDFI GLPRT R FT IWV+VDRLTKSAHF+P ++ +K A + SEI+R HGVPV I+S RD+R
Subjt: RCLTCRQVKALEQRPPVCCTVPSVPQWKWEEISMDFIAGLPRTPRKFTQIWVIVDRLTKSAHFIP-ETLIPWNKGAACFWSEIIRYHGVPVRIVSHRDSR
Query: FTSRFSRALR-------------------KVERVNQILEDMLRACVLDFPGAWDQD--------------------------------------------
FTS+F + L+ + ER+NQ+LEDMLRAC L+F G+WD
Subjt: FTSRFSRALR-------------------KVERVNQILEDMLRACVLDFPGAWDQD--------------------------------------------
Query: -----------SDRWSLPITTI-----------IDRRFDGSIR-----GLVRQALSVPVFGKRKVHSVFHVSMLRQYVPDPSHIVDFEPLQLNEDLSFEE
D+ L + + + RF G G V L++P VH VFHVSMLR+YVPDPSH+VD+EPL+++E+LS+ E
Subjt: -----------SDRWSLPITTI-----------IDRRFDGSIR-----GLVRQALSVPVFGKRKVHSVFHVSMLRQYVPDPSHIVDFEPLQLNEDLSFEE
Query: KPVGILAFETKTLRNREIRLVKVQWRSQSSEEATWEREDEMRLHHPELFQ
+PV +LA E K LRNREI LVKV WR+ EEATWE+ED+MR +PELF+
Subjt: KPVGILAFETKTLRNREIRLVKVQWRSQSSEEATWEREDEMRLHHPELFQ
|
|