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Sed0012057 (gene) of Chayote v1 genome

Gene IDSed0012057
OrganismSechium edule (Chayote v1)
DescriptionDynein light chain
Genome locationLG02:45334972..45337761
RNA-Seq ExpressionSed0012057
SyntenySed0012057
Gene Ontology termsGO:0007017 - microtubule-based process (biological process)
GO:0005737 - cytoplasm (cellular component)
GO:0005874 - microtubule (cellular component)
GO:0030286 - dynein complex (cellular component)
GO:0045505 - dynein intermediate chain binding (molecular function)
GO:0051959 - dynein light intermediate chain binding (molecular function)
InterPro domainsIPR001372 - Dynein light chain, type 1/2
IPR037177 - Dynein light chain superfamily


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAA8518956.1 hypothetical protein F0562_016270 [Nyssa sinensis]5.1e-4073.15Show/hide
Query:  MLEGKAVVRETDMPEGIQGHVLQLAYKALDQHEVSDCQSIACFIKQRFDEVYGPSWHCVVGKAFGGCITHLCGSFISFHVDTMEFLVFKDGRDCSKSVEE
        MLEGKAV+RETDMPE +Q HV++LAY+ALD HE SDCQSIA +IKQ+FDE YGP+WHCVVGK FG CITHLCGSFI F VD MEFLVFKDG+D ++S EE
Subjt:  MLEGKAVVRETDMPEGIQGHVLQLAYKALDQHEVSDCQSIACFIKQRFDEVYGPSWHCVVGKAFGGCITHLCGSFISFHVDTMEFLVFKDGRDCSKSVEE

Query:  SAGVRRHE
        + GV + E
Subjt:  SAGVRRHE

KAG7027933.1 putative receptor protein kinase ZmPK1, partial [Cucurbita argyrosperma subsp. argyrosperma]1.0e-4076.15Show/hide
Query:  MLEGKAVVRETDMPEGIQGHVLQLAYKALDQHEVSDCQSIACFIKQRFDEVYGPSWHCVVGKAFGGCITHLCGSFISFHVDTMEFLVFKDGRDCSKSVEE
        MLEGKAVVRETDM E IQGH L LAYKALDQHEVSD QSIA FIKQR DE YGP+W CVVGKAFGGCITH+CG+FISFHVDTMEFL+FKD  DC K+V+ 
Subjt:  MLEGKAVVRETDMPEGIQGHVLQLAYKALDQHEVSDCQSIACFIKQRFDEVYGPSWHCVVGKAFGGCITHLCGSFISFHVDTMEFLVFKDGRDCSKSVEE

Query:  SAGVRRHES
        + G   H++
Subjt:  SAGVRRHES

KGN58830.1 hypothetical protein Csa_001625 [Cucumis sativus]3.9e-4887.74Show/hide
Query:  MLEGKAVVRETDMPEGIQGHVLQLAYKALDQHEVSDCQSIACFIKQRFDEVYGPSWHCVVGKAFGGCITHLCGSFISFHVDTMEFLVFKDGRDCSKSVEE
        MLEGKAVVRETDMP+GIQ HVL+LAYKALDQHEVSDCQSIA FIKQRFDE YGP+WHCV GKAFGGCITHLCGS+I FHVDTMEFLVFKDGRDC KSVEE
Subjt:  MLEGKAVVRETDMPEGIQGHVLQLAYKALDQHEVSDCQSIACFIKQRFDEVYGPSWHCVVGKAFGGCITHLCGSFISFHVDTMEFLVFKDGRDCSKSVEE

Query:  SAGVRR
        + GV R
Subjt:  SAGVRR

XP_008442502.1 PREDICTED: dynein light chain 1, cytoplasmic-like [Cucumis melo]3.5e-4989.62Show/hide
Query:  MLEGKAVVRETDMPEGIQGHVLQLAYKALDQHEVSDCQSIACFIKQRFDEVYGPSWHCVVGKAFGGCITHLCGSFISFHVDTMEFLVFKDGRDCSKSVEE
        MLEGKAVVRETDMP+GIQ HVL+LAYKALDQHEVSDCQSIA FIKQRFDE YGP+WHCV GKAFGGCITHLCGSFI FHVDTMEFLVFKDGRDCSKSVEE
Subjt:  MLEGKAVVRETDMPEGIQGHVLQLAYKALDQHEVSDCQSIACFIKQRFDEVYGPSWHCVVGKAFGGCITHLCGSFISFHVDTMEFLVFKDGRDCSKSVEE

Query:  SAGVRR
        + GV R
Subjt:  SAGVRR

XP_022145583.1 dynein light chain-like [Momordica charantia]4.3e-4785.85Show/hide
Query:  MLEGKAVVRETDMPEGIQGHVLQLAYKALDQHEVSDCQSIACFIKQRFDEVYGPSWHCVVGKAFGGCITHLCGSFISFHVDTMEFLVFKDGRDCSKSVEE
        MLEGKA VRETDMPEGIQ HVL+LAYKALD HEVSDCQSIA FIKQRFDE YGP+WHCVVGKAFGGCITHLCGSFI FHVD MEFL+FKDGRD SKS+EE
Subjt:  MLEGKAVVRETDMPEGIQGHVLQLAYKALDQHEVSDCQSIACFIKQRFDEVYGPSWHCVVGKAFGGCITHLCGSFISFHVDTMEFLVFKDGRDCSKSVEE

Query:  SAGVRR
        + GVR+
Subjt:  SAGVRR

TrEMBL top hitse value%identityAlignment
A0A0A0LA26 Dynein light chain1.9e-4887.74Show/hide
Query:  MLEGKAVVRETDMPEGIQGHVLQLAYKALDQHEVSDCQSIACFIKQRFDEVYGPSWHCVVGKAFGGCITHLCGSFISFHVDTMEFLVFKDGRDCSKSVEE
        MLEGKAVVRETDMP+GIQ HVL+LAYKALDQHEVSDCQSIA FIKQRFDE YGP+WHCV GKAFGGCITHLCGS+I FHVDTMEFLVFKDGRDC KSVEE
Subjt:  MLEGKAVVRETDMPEGIQGHVLQLAYKALDQHEVSDCQSIACFIKQRFDEVYGPSWHCVVGKAFGGCITHLCGSFISFHVDTMEFLVFKDGRDCSKSVEE

Query:  SAGVRR
        + GV R
Subjt:  SAGVRR

A0A1S3B5U2 Dynein light chain1.7e-4989.62Show/hide
Query:  MLEGKAVVRETDMPEGIQGHVLQLAYKALDQHEVSDCQSIACFIKQRFDEVYGPSWHCVVGKAFGGCITHLCGSFISFHVDTMEFLVFKDGRDCSKSVEE
        MLEGKAVVRETDMP+GIQ HVL+LAYKALDQHEVSDCQSIA FIKQRFDE YGP+WHCV GKAFGGCITHLCGSFI FHVDTMEFLVFKDGRDCSKSVEE
Subjt:  MLEGKAVVRETDMPEGIQGHVLQLAYKALDQHEVSDCQSIACFIKQRFDEVYGPSWHCVVGKAFGGCITHLCGSFISFHVDTMEFLVFKDGRDCSKSVEE

Query:  SAGVRR
        + GV R
Subjt:  SAGVRR

A0A2P5EZ32 Dynein light chain4.2e-4074.04Show/hide
Query:  MLEGKAVVRETDMPEGIQGHVLQLAYKALDQHEVSDCQSIACFIKQRFDEVYGPSWHCVVGKAFGGCITHLCGSFISFHVDTMEFLVFKDGRDCSKSVEE
        MLEGKAVVRETDMPE +Q HV++LAYKALD HEVSDCQSIA +IKQ+FDE YGP+W+CVVGK FG CITHLCGSFI FHV+ MEFL+FKDG+D +++++E
Subjt:  MLEGKAVVRETDMPEGIQGHVLQLAYKALDQHEVSDCQSIACFIKQRFDEVYGPSWHCVVGKAFGGCITHLCGSFISFHVDTMEFLVFKDGRDCSKSVEE

Query:  SAGV
        + GV
Subjt:  SAGV

A0A5J4ZMN8 Dynein light chain2.5e-4073.15Show/hide
Query:  MLEGKAVVRETDMPEGIQGHVLQLAYKALDQHEVSDCQSIACFIKQRFDEVYGPSWHCVVGKAFGGCITHLCGSFISFHVDTMEFLVFKDGRDCSKSVEE
        MLEGKAV+RETDMPE +Q HV++LAY+ALD HE SDCQSIA +IKQ+FDE YGP+WHCVVGK FG CITHLCGSFI F VD MEFLVFKDG+D ++S EE
Subjt:  MLEGKAVVRETDMPEGIQGHVLQLAYKALDQHEVSDCQSIACFIKQRFDEVYGPSWHCVVGKAFGGCITHLCGSFISFHVDTMEFLVFKDGRDCSKSVEE

Query:  SAGVRRHE
        + GV + E
Subjt:  SAGVRRHE

A0A6J1CWC6 Dynein light chain2.1e-4785.85Show/hide
Query:  MLEGKAVVRETDMPEGIQGHVLQLAYKALDQHEVSDCQSIACFIKQRFDEVYGPSWHCVVGKAFGGCITHLCGSFISFHVDTMEFLVFKDGRDCSKSVEE
        MLEGKA VRETDMPEGIQ HVL+LAYKALD HEVSDCQSIA FIKQRFDE YGP+WHCVVGKAFGGCITHLCGSFI FHVD MEFL+FKDGRD SKS+EE
Subjt:  MLEGKAVVRETDMPEGIQGHVLQLAYKALDQHEVSDCQSIACFIKQRFDEVYGPSWHCVVGKAFGGCITHLCGSFISFHVDTMEFLVFKDGRDCSKSVEE

Query:  SAGVRR
        + GVR+
Subjt:  SAGVRR

SwissProt top hitse value%identityAlignment
O02414 Dynein light chain LC6, flagellar outer arm4.5e-1540.66Show/hide
Query:  MLEGKAVVRETDMPEGIQGHVLQLAYKALDQHEVSDCQSIACFIKQRFDEVYGPSWHCVVGKAFGGCITHLCGSFISFHVDTMEFLVFKDG
        M E KAV++  DMPE +Q   +  A +AL++  +   + IA +IK+ FD+ Y P+WHC+VG+ FG  +TH    FI F++  +  L+FK G
Subjt:  MLEGKAVVRETDMPEGIQGHVLQLAYKALDQHEVSDCQSIACFIKQRFDEVYGPSWHCVVGKAFGGCITHLCGSFISFHVDTMEFLVFKDG

O96860 Dynein light chain 2, cytoplasmic1.7e-1439.56Show/hide
Query:  MLEGKAVVRETDMPEGIQGHVLQLAYKALDQHEVSDCQSIACFIKQRFDEVYGPSWHCVVGKAFGGCITHLCGSFISFHVDTMEFLVFKDG
        M + KAV++  DM E +Q   +  A +AL+++ +   + IA FIK+ FD+ Y P+WHC+VG+ FG  +TH    FI F++  +  L+FK G
Subjt:  MLEGKAVVRETDMPEGIQGHVLQLAYKALDQHEVSDCQSIACFIKQRFDEVYGPSWHCVVGKAFGGCITHLCGSFISFHVDTMEFLVFKDG

Q22799 Dynein light chain 1, cytoplasmic2.2e-1437.36Show/hide
Query:  MLEGKAVVRETDMPEGIQGHVLQLAYKALDQHEVSDCQSIACFIKQRFDEVYGPSWHCVVGKAFGGCITHLCGSFISFHVDTMEFLVFKDG
        M++ KAV++  DM + +Q   +  A +AL+++ +   + IA +IK+ FD+ Y P+WHC+VG+ FG  +TH    FI F++  +  L+FK G
Subjt:  MLEGKAVVRETDMPEGIQGHVLQLAYKALDQHEVSDCQSIACFIKQRFDEVYGPSWHCVVGKAFGGCITHLCGSFISFHVDTMEFLVFKDG

Q94748 Probable dynein light chain1.2e-1542.86Show/hide
Query:  MLEGKAVVRETDMPEGIQGHVLQLAYKALDQHEVSDCQSIACFIKQRFDEVYGPSWHCVVGKAFGGCITHLCGSFISFHVDTMEFLVFKDG
        M E KAV++  DM E +Q   +  A  ALD++E+   + +A +IK+ FD  Y P+WHC+VGK FG  +TH    FI F++    FL+FK G
Subjt:  MLEGKAVVRETDMPEGIQGHVLQLAYKALDQHEVSDCQSIACFIKQRFDEVYGPSWHCVVGKAFGGCITHLCGSFISFHVDTMEFLVFKDG

Q94758 Dynein light chain9.0e-1642.86Show/hide
Query:  MLEGKAVVRETDMPEGIQGHVLQLAYKALDQHEVSDCQSIACFIKQRFDEVYGPSWHCVVGKAFGGCITHLCGSFISFHVDTMEFLVFKDG
        M E KAV++  DM E +Q   + +A  A+D+H++   + IA  IK+ FD  Y P+WHC+VG+ FG  +TH   +FI F++D   FL+FK G
Subjt:  MLEGKAVVRETDMPEGIQGHVLQLAYKALDQHEVSDCQSIACFIKQRFDEVYGPSWHCVVGKAFGGCITHLCGSFISFHVDTMEFLVFKDG

Arabidopsis top hitse value%identityAlignment
AT1G52240.2 RHO guanyl-nucleotide exchange factor 117.3e-2151.69Show/hide
Query:  MLEGKAVVRETDMPEGIQGHVLQLAYKALDQHEVSDCQSIACFIKQRFDEVYGPSWHCVVGKAFGGCITHLCGSFISFHVDTMEFLVFK
        MLEGKA+V ++DMP  +Q   +  A +ALD  +V DC+SIA  IK+ FDE YG  W CVVG  FG   TH  G+FI F ++T++FL+FK
Subjt:  MLEGKAVVRETDMPEGIQGHVLQLAYKALDQHEVSDCQSIACFIKQRFDEVYGPSWHCVVGKAFGGCITHLCGSFISFHVDTMEFLVFK

AT3G16120.1 Dynein light chain type 1 family protein1.6e-2052.81Show/hide
Query:  MLEGKAVVRETDMPEGIQGHVLQLAYKALDQHEVSDCQSIACFIKQRFDEVYGPSWHCVVGKAFGGCITHLCGSFISFHVDTMEFLVFK
        MLEGKA V ETDMP  +Q   +++A ++LD  +V D  SIA  IK+ FDE YG  W CVVG  FG   TH  G+FI FH+ T+ FL+FK
Subjt:  MLEGKAVVRETDMPEGIQGHVLQLAYKALDQHEVSDCQSIACFIKQRFDEVYGPSWHCVVGKAFGGCITHLCGSFISFHVDTMEFLVFK

AT4G15930.1 Dynein light chain type 1 family protein1.9e-1335.63Show/hide
Query:  KAVVRETDMPEGIQGHVLQLAYKALDQHEVSDCQSIACFIKQRFDEVYGPSWHCVVGKAFGGCITHLCGSFISFHVDTMEFLVFKDG
        +AV++  DM + +Q   +++A  A +++ V   + IA  IK+ FD+ +G +WHC+VG+ FG  +TH    F+ F++D    L+FK G
Subjt:  KAVVRETDMPEGIQGHVLQLAYKALDQHEVSDCQSIACFIKQRFDEVYGPSWHCVVGKAFGGCITHLCGSFISFHVDTMEFLVFKDG

AT4G27360.1 Dynein light chain type 1 family protein2.0e-1848.31Show/hide
Query:  MLEGKAVVRETDMPEGIQGHVLQLAYKALDQHEVSDCQSIACFIKQRFDEVYGPSWHCVVGKAFGGCITHLCGSFISFHVDTMEFLVFK
        MLEGKAV+ +TDM + ++   L LA KALD  +V++   IA FIK+ FD  YG  W C+VG  FG  +TH  G FI F V ++  L+FK
Subjt:  MLEGKAVVRETDMPEGIQGHVLQLAYKALDQHEVSDCQSIACFIKQRFDEVYGPSWHCVVGKAFGGCITHLCGSFISFHVDTMEFLVFK

AT5G20110.1 Dynein light chain type 1 family protein5.1e-1442.31Show/hide
Query:  DMPEGIQGHVLQLAYKALDQHEVSDCQSIACFIKQRFDEVYGPSWHCVVGKAFGGCITHLCGSFISFHVDTMEFLVFK
        DMP  +Q H  + A   LD  E    + +A  +K+ FD+ YGP+WHC+VG +FG  +TH  G FI F +D +  L+FK
Subjt:  DMPEGIQGHVLQLAYKALDQHEVSDCQSIACFIKQRFDEVYGPSWHCVVGKAFGGCITHLCGSFISFHVDTMEFLVFK


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGTTGGAGGGTAAAGCTGTGGTCCGCGAAACAGACATGCCAGAGGGGATCCAGGGCCATGTCCTTCAGTTGGCTTATAAAGCACTTGATCAACACGAAGTTTCCGACTG
TCAATCCATTGCATGTTTCATCAAACAGAGGTTTGACGAAGTTTATGGCCCATCATGGCATTGTGTGGTGGGCAAAGCCTTTGGAGGTTGCATTACACATTTATGTGGTA
GTTTCATCTCTTTCCATGTGGATACAATGGAGTTTCTGGTCTTCAAGGATGGAAGAGATTGCTCGAAAAGCGTTGAAGAAAGTGCTGGAGTTCGCCGCCACGAAAGTTAA
mRNA sequenceShow/hide mRNA sequence
TATTTCTGTGTCACAATGTGTTGATTTAACTCCTGCTAATGCAAACAAAGTTTGCTAATTTTGTTGTTTTGAAGGTAGGAGTAAAGAGAGAGGCAAACACTGAAATATCA
TCGTTTGGTTTTGAAGCACAGCCACCAGATTATTCTTTTCTTTTCTTTTTGTTAATCATAAAAAATACACTTCACTTGTCTGACAATTGGGCTATAAATTTGCAGAGGTT
TGTGGCAGCAGGCTTTTGCAGGCTGGTTGGTACAGAGAAAAAAGCCAAGTGGTCATCAGTTTTTGAAGATGTTGGAGGGTAAAGCTGTGGTCCGCGAAACAGACATGCCA
GAGGGGATCCAGGGCCATGTCCTTCAGTTGGCTTATAAAGCACTTGATCAACACGAAGTTTCCGACTGTCAATCCATTGCATGTTTCATCAAACAGAGGTTTGACGAAGT
TTATGGCCCATCATGGCATTGTGTGGTGGGCAAAGCCTTTGGAGGTTGCATTACACATTTATGTGGTAGTTTCATCTCTTTCCATGTGGATACAATGGAGTTTCTGGTCT
TCAAGGATGGAAGAGATTGCTCGAAAAGCGTTGAAGAAAGTGCTGGAGTTCGCCGCCACGAAAGTTAAGTAGAGACCGAGTATAATGGGGTTACATACTACAGCCTTCTT
GATTTGATTGTGAGTGTTAGCATTTCTATTATGTTGTTTTAATGTTCTAAGACTGTATTGATATCCAATCGTGTCGTAGCTCGAATGAGAGGTTGATATGAAAACAGAAA
ACCAAAATCAAAACAACAATGGTACAGTGTGTGATAATCCAATATCTTTAGATACAAACACTTATTCCATCAGTTCTGTTAGATCTTACTTTACAAAGAAAGCTTACATG
TGTTTGGTGTCTTAATCTTGCAGCATGTGACAGAAAAATCATCACCGCACCATGTTCAAAACATGAAGCCTTGTGAGAACATAACATAAAAATAAAAACAGAAGGAAAAG
AGCAAGAAACCTTGCAGGAGAGTGCCAAAATGAGCACAGCACAATCGGCATCTCGTAACAACGACCTCGGAATTAGAGGTTCGATCTCCCATCCTGCATATTATCAACAA
AAAAAAAAAAAAAAAAACCTTGTAGGACATTTGATAACCTGCTAGTCAATTCCAGCATTGTTAGTAAGGAAGAGGTAATCTGCAACCCGAGATCTAGAAAAGAAGACATT
TTTTATTTATTTATTTCTACTTTTCTGATCTAAACCTCAGGATGCAGATTACCCTATCCTTACCCAACAAAAATCATAAAAATTTAAAAAAGGTAGAGAAAGTAGAAAGT
TTTGACTGAGGAAGAAGCTTTGGTTTTAGAAAGAGCTGAAGTTCATATGGTAAATTCATCAGTATTTATAATGGGTTTTGAAGCCCAAAAATATATTCCAAAG
Protein sequenceShow/hide protein sequence
MLEGKAVVRETDMPEGIQGHVLQLAYKALDQHEVSDCQSIACFIKQRFDEVYGPSWHCVVGKAFGGCITHLCGSFISFHVDTMEFLVFKDGRDCSKSVEESAGVRRHES