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Sed0012061 (gene) of Chayote v1 genome

Gene IDSed0012061
OrganismSechium edule (Chayote v1)
DescriptionrRNA N-glycosidase
Genome locationLG04:30886422..30886940
RNA-Seq ExpressionSed0012061
SyntenySed0012061
Gene Ontology termsNA
InterPro domainsIPR000772 - Ricin B, lectin domain
IPR035992 - Ricin B-like lectins


Homology Show/hide homology
GenBank top hitse value%identityAlignment
Q70US9.1 RecName: Full=Volkensin; AltName: Allergen=Ade v RIP; Contains: RecName: Full=Volkensin A chain; Short=VKA; AltName: Full=Ribosome-inactivating protein volkensin; Short=RIP VK; AltName: Full=rRNA N-glycosidase; Contains: RecName: Full=Volkensin B chain; Short=VKB [Adenia volkensii]9.9e-0633.33Show/hide
Query:  RCLDFNPPLYKGSNHDYDVPAELFPC-SNNRVNQFWILSPEGYIRSSGNLCLIYDPYVNNPKTPATVRACDKSSVEAKKWKIWPEHGTITHVAMPRHVLT
        RC+D     +   N       +++PC S+   NQ W L  +G IR  G  CL     V +P+  A +  C      A KW++W ++GTI + A  R VLT
Subjt:  RCLDFNPPLYKGSNHDYDVPAELFPC-SNNRVNQFWILSPEGYIRSSGNLCLIYDPYVNNPKTPATVRACDKSSVEAKKWKIWPEHGTITHVAMPRHVLT

Query:  APFAGPYSFVDVEQNTYASSQTW
        AP       ++++ N YA+SQ W
Subjt:  APFAGPYSFVDVEQNTYASSQTW

XP_002529062.1 ricin-like [Ricinus communis]1.8e-0736.89Show/hide
Query:  CLDFNPPLYKGSNHDYDVPAELFPC-SNNRVNQFWILSPEGYIRSSGNLCLIYDPYVNNPKTPATVRACDKSSVEAKKWKIWPEHGTITHVAMPRHVLTA
        C+D     Y   N       +L+PC SN+ VNQ W L  +G IRS+G  CL  + +   P     +  C  +   A  W+IW E+GTI  ++    VL A
Subjt:  CLDFNPPLYKGSNHDYDVPAELFPC-SNNRVNQFWILSPEGYIRSSGNLCLIYDPYVNNPKTPATVRACDKSSVEAKKWKIWPEHGTITHVAMPRHVLTA

Query:  PFAGPYSFVDVEQNTYASSQTW
        P  G ++ + VE NTYA+SQ+W
Subjt:  PFAGPYSFVDVEQNTYASSQTW

TrEMBL top hitse value%identityAlignment
B9SSU3 rRNA N-glycosidase8.7e-0836.89Show/hide
Query:  CLDFNPPLYKGSNHDYDVPAELFPC-SNNRVNQFWILSPEGYIRSSGNLCLIYDPYVNNPKTPATVRACDKSSVEAKKWKIWPEHGTITHVAMPRHVLTA
        C+D     Y   N       +L+PC SN+ VNQ W L  +G IRS+G  CL  + +   P     +  C  +   A  W+IW E+GTI  ++    VL A
Subjt:  CLDFNPPLYKGSNHDYDVPAELFPC-SNNRVNQFWILSPEGYIRSSGNLCLIYDPYVNNPKTPATVRACDKSSVEAKKWKIWPEHGTITHVAMPRHVLTA

Query:  PFAGPYSFVDVEQNTYASSQTW
        P  G ++ + VE NTYA+SQ+W
Subjt:  PFAGPYSFVDVEQNTYASSQTW

SwissProt top hitse value%identityAlignment
Q70US9 Volkensin (Fragment)1.3e-0833.33Show/hide
Query:  RCLDFNPPLYKGSNHDYDVPAELFPC-SNNRVNQFWILSPEGYIRSSGNLCLIYDPYVNNPKTPATVRACDKSSVEAKKWKIWPEHGTITHVAMPRHVLT
        RC+D     +   N       +++PC S+   NQ W L  +G IR  G  CL     V +P+  A +  C      A KW++W ++GTI + A  R VLT
Subjt:  RCLDFNPPLYKGSNHDYDVPAELFPC-SNNRVNQFWILSPEGYIRSSGNLCLIYDPYVNNPKTPATVRACDKSSVEAKKWKIWPEHGTITHVAMPRHVLT

Query:  APFAGPYSFVDVEQNTYASSQTW
        AP       ++++ N YA+SQ W
Subjt:  APFAGPYSFVDVEQNTYASSQTW

Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGACAAAAGTTGCATTTTGCATCATTGTTGGGCTTGTTTCACTGGCTGCCTCCAACACCATGGCTGTGGACATTGACTATGTCCCATTCAACCTACAAGTACATATTGC
CAATGGAGAACCAAAACATATGCGGTGTTTGGATTTCAACCCTCCATTGTACAAGGGCTCGAACCACGACTACGACGTTCCAGCCGAACTCTTCCCGTGCTCAAATAATA
GAGTGAACCAATTCTGGATTTTGTCCCCAGAGGGCTATATTCGATCTTCTGGAAACTTGTGCTTGATCTATGACCCCTACGTCAACAATCCAAAAACCCCTGCAACGGTA
AGGGCTTGCGATAAATCGAGCGTAGAAGCGAAGAAATGGAAGATTTGGCCTGAACATGGCACCATCACCCACGTTGCGATGCCCCGCCATGTCCTCACAGCGCCTTTTGC
CGGGCCATATTCGTTTGTGGATGTTGAGCAAAACACATACGCTTCATCACAGACTTGGGAATTCTTATATAGCAACTAA
mRNA sequenceShow/hide mRNA sequence
ATGACAAAAGTTGCATTTTGCATCATTGTTGGGCTTGTTTCACTGGCTGCCTCCAACACCATGGCTGTGGACATTGACTATGTCCCATTCAACCTACAAGTACATATTGC
CAATGGAGAACCAAAACATATGCGGTGTTTGGATTTCAACCCTCCATTGTACAAGGGCTCGAACCACGACTACGACGTTCCAGCCGAACTCTTCCCGTGCTCAAATAATA
GAGTGAACCAATTCTGGATTTTGTCCCCAGAGGGCTATATTCGATCTTCTGGAAACTTGTGCTTGATCTATGACCCCTACGTCAACAATCCAAAAACCCCTGCAACGGTA
AGGGCTTGCGATAAATCGAGCGTAGAAGCGAAGAAATGGAAGATTTGGCCTGAACATGGCACCATCACCCACGTTGCGATGCCCCGCCATGTCCTCACAGCGCCTTTTGC
CGGGCCATATTCGTTTGTGGATGTTGAGCAAAACACATACGCTTCATCACAGACTTGGGAATTCTTATATAGCAACTAA
Protein sequenceShow/hide protein sequence
MTKVAFCIIVGLVSLAASNTMAVDIDYVPFNLQVHIANGEPKHMRCLDFNPPLYKGSNHDYDVPAELFPCSNNRVNQFWILSPEGYIRSSGNLCLIYDPYVNNPKTPATV
RACDKSSVEAKKWKIWPEHGTITHVAMPRHVLTAPFAGPYSFVDVEQNTYASSQTWEFLYSN