CuGenDBv2

Gene ID	Sed0012077
Organism	Sechium edule (Chayote v1)
Description	50S ribosomal protein L23, chloroplastic
Genome location	Contig00347:53387..53667
RNA-Seq Expression	Sed0012077
Synteny	Sed0012077
Gene Ontology terms	GO:0006412 - translation (biological process) GO:0005840 - ribosome (cellular component) GO:0009507 - chloroplast (cellular component) GO:0003729 - mRNA binding (molecular function) GO:0003735 - structural constituent of ribosome (molecular function) GO:0019843 - rRNA binding (molecular function)
InterPro domains	IPR001014 - Ribosomal protein L23/L25, conserved site IPR012677 - Nucleotide-binding alpha-beta plait domain superfamily IPR012678 - Ribosomal protein L23/L15e core domain superfamily IPR013025 - Ribosomal protein L25/L23

Homology

Show/hide homology

GenBank top hits

e value

%identity

Alignment

AWI70990.1 ribosomal protein L23 [Streptoechites chinensis]

1.5e-36

87.1

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Query:  MDGIKYAVFTDKSIRLLGKNQYTSNVESGSTRTEIKHWVELFFGV------------KGRRMGPIMGHTMHYRRMIITLQPGYSIPPLRKKRT
        MDGIKYAVFTDKSIRLLGKNQYTSNVESGSTRTEIKHWVELFFGV            KGRRMGPIMGHTMHYRRMIITLQPGYSIPPLRKKRT
Subjt:  MDGIKYAVFTDKSIRLLGKNQYTSNVESGSTRTEIKHWVELFFGV------------KGRRMGPIMGHTMHYRRMIITLQPGYSIPPLRKKRT

YP_003359400.1 ribosomal protein L23 [Olea europaea]

1.5e-36

87.1

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Query:  MDGIKYAVFTDKSIRLLGKNQYTSNVESGSTRTEIKHWVELFFGV------------KGRRMGPIMGHTMHYRRMIITLQPGYSIPPLRKKRT
        MDGIKYAVFTDKSIRLLGKNQYTSNVESGSTRTEIKHWVELFFGV            KGRRMGPIMGHTMHYRRMIITLQPGYSIPPLRKKRT
Subjt:  MDGIKYAVFTDKSIRLLGKNQYTSNVESGSTRTEIKHWVELFFGV------------KGRRMGPIMGHTMHYRRMIITLQPGYSIPPLRKKRT

YP_009127236.1 ribosomal protein L23 [Libidibia coriaria]

1.5e-36

87.1

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Query:  MDGIKYAVFTDKSIRLLGKNQYTSNVESGSTRTEIKHWVELFFG------------VKGRRMGPIMGHTMHYRRMIITLQPGYSIPPLRKKRT
        MDGIKYAVFTDKSIRLLGKNQYTSNVESGSTRTEIKHWVELFFG            VKGRRMGPIMGHTMHYRRMIITLQPGYSIPPLRKKRT
Subjt:  MDGIKYAVFTDKSIRLLGKNQYTSNVESGSTRTEIKHWVELFFG------------VKGRRMGPIMGHTMHYRRMIITLQPGYSIPPLRKKRT

YP_009262332.1 ribosomal protein L23 [Spondias tuberosa]

1.5e-36

87.1

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Query:  MDGIKYAVFTDKSIRLLGKNQYTSNVESGSTRTEIKHWVELFFGV------------KGRRMGPIMGHTMHYRRMIITLQPGYSIPPLRKKRT
        MDGIKYAVFTDKSIRLLGKNQYTSNVESGSTRTEIKHWVELFFGV            KGRRMGPIMGHTMHYRRMIITLQPGYSIPPLRKKRT
Subjt:  MDGIKYAVFTDKSIRLLGKNQYTSNVESGSTRTEIKHWVELFFGV------------KGRRMGPIMGHTMHYRRMIITLQPGYSIPPLRKKRT

YP_009338672.1 ribosomal protein L23 [Averrhoa carambola]

1.5e-36

87.1

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Query:  MDGIKYAVFTDKSIRLLGKNQYTSNVESGSTRTEIKHWVELFFGV------------KGRRMGPIMGHTMHYRRMIITLQPGYSIPPLRKKRT
        MDGIKYAVFTDKSIRLLGKNQYTSNVESGSTRTEIKHWVELFFGV            KGRRMGPIMGHTMHYRRMIITLQPGYSIPPLRKKRT
Subjt:  MDGIKYAVFTDKSIRLLGKNQYTSNVESGSTRTEIKHWVELFFGV------------KGRRMGPIMGHTMHYRRMIITLQPGYSIPPLRKKRT

TrEMBL top hits

e value

%identity

Alignment

A0A2L0VCX1 50S ribosomal protein L23

7.2e-37

87.1

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Query:  MDGIKYAVFTDKSIRLLGKNQYTSNVESGSTRTEIKHWVELFFGV------------KGRRMGPIMGHTMHYRRMIITLQPGYSIPPLRKKRT
        MDGIKYAVFTDKSIRLLGKNQYTSNVESGSTRTEIKHWVELFFGV            KGRRMGPIMGHTMHYRRMIITLQPGYSIPPLRKKRT
Subjt:  MDGIKYAVFTDKSIRLLGKNQYTSNVESGSTRTEIKHWVELFFGV------------KGRRMGPIMGHTMHYRRMIITLQPGYSIPPLRKKRT

A0A4D5Y878 50S ribosomal protein L23, chloroplastic

7.2e-37

87.1

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Query:  MDGIKYAVFTDKSIRLLGKNQYTSNVESGSTRTEIKHWVELFFGV------------KGRRMGPIMGHTMHYRRMIITLQPGYSIPPLRKKRT
        MDGIKYAVFTDKSIRLLGKNQYTSNVESGSTRTEIKHWVELFFGV            KGRRMGPIMGHTMHYRRMIITLQPGYSIPPLRKKRT
Subjt:  MDGIKYAVFTDKSIRLLGKNQYTSNVESGSTRTEIKHWVELFFGV------------KGRRMGPIMGHTMHYRRMIITLQPGYSIPPLRKKRT

A0A6B7GR59 50S ribosomal protein L23, chloroplastic

7.2e-37

87.1

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Query:  MDGIKYAVFTDKSIRLLGKNQYTSNVESGSTRTEIKHWVELFFGV------------KGRRMGPIMGHTMHYRRMIITLQPGYSIPPLRKKRT
        MDGIKYAVFTDKSIRLLGKNQYTSNVESGSTRTEIKHWVELFFGV            KGRRMGPIMGHTMHYRRMIITLQPGYSIPPLRKKRT
Subjt:  MDGIKYAVFTDKSIRLLGKNQYTSNVESGSTRTEIKHWVELFFGV------------KGRRMGPIMGHTMHYRRMIITLQPGYSIPPLRKKRT

A0A7G7XSR1 50S ribosomal protein L23, chloroplastic

7.2e-37

87.1

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Query:  MDGIKYAVFTDKSIRLLGKNQYTSNVESGSTRTEIKHWVELFFGV------------KGRRMGPIMGHTMHYRRMIITLQPGYSIPPLRKKRT
        MDGIKYAVFTDKSIRLLGKNQYTSNVESGSTRTEIKHWVELFFGV            KGRRMGPIMGHTMHYRRMIITLQPGYSIPPLRKKRT
Subjt:  MDGIKYAVFTDKSIRLLGKNQYTSNVESGSTRTEIKHWVELFFGV------------KGRRMGPIMGHTMHYRRMIITLQPGYSIPPLRKKRT

F5C018 50S ribosomal protein L23, chloroplastic

7.2e-37

87.1

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Query:  MDGIKYAVFTDKSIRLLGKNQYTSNVESGSTRTEIKHWVELFFGV------------KGRRMGPIMGHTMHYRRMIITLQPGYSIPPLRKKRT
        MDGIKYAVFTDKSIRLLGKNQYTSNVESGSTRTEIKHWVELFFGV            KGRRMGPIMGHTMHYRRMIITLQPGYSIPPLRKKRT
Subjt:  MDGIKYAVFTDKSIRLLGKNQYTSNVESGSTRTEIKHWVELFFGV------------KGRRMGPIMGHTMHYRRMIITLQPGYSIPPLRKKRT

SwissProt top hits

e value

%identity

Alignment

Q06R67 50S ribosomal protein L23, chloroplastic

5.7e-39

86.02

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Query:  MDGIKYAVFTDKSIRLLGKNQYTSNVESGSTRTEIKHWVELFFGV------------KGRRMGPIMGHTMHYRRMIITLQPGYSIPPLRKKRT
        MDGIKYAVFT+KSIRLLGKNQYTSNVESGSTRTEIKHWVELFFGV            KGRRMGPIMGHTMHYRRMIITLQPGYSIPPLRKKRT
Subjt:  MDGIKYAVFTDKSIRLLGKNQYTSNVESGSTRTEIKHWVELFFGV------------KGRRMGPIMGHTMHYRRMIITLQPGYSIPPLRKKRT

Q09FP7 50S ribosomal protein L23, chloroplastic

7.4e-39

86.02

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Query:  MDGIKYAVFTDKSIRLLGKNQYTSNVESGSTRTEIKHWVELFFGV------------KGRRMGPIMGHTMHYRRMIITLQPGYSIPPLRKKRT
        MDGIKYAVFTDKSIRLLG NQYTSNVESGSTRTEIKHWVELFFGV            KGRRMGPIMGHTMHYRRMIITLQPGYSIPPLRKKRT
Subjt:  MDGIKYAVFTDKSIRLLGKNQYTSNVESGSTRTEIKHWVELFFGV------------KGRRMGPIMGHTMHYRRMIITLQPGYSIPPLRKKRT

Q0PUX7 50S ribosomal protein L23, chloroplastic

7.4e-39

86.02

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Query:  MDGIKYAVFTDKSIRLLGKNQYTSNVESGSTRTEIKHWVELFFGV------------KGRRMGPIMGHTMHYRRMIITLQPGYSIPPLRKKRT
        MDGIKYAVFTDKSIRLLGKNQYTSNVESGSTRTEIKHWVELFFGV            KGRRMGP MGHTMHYRRMIITLQPGYSIPPLRKKRT
Subjt:  MDGIKYAVFTDKSIRLLGKNQYTSNVESGSTRTEIKHWVELFFGV------------KGRRMGPIMGHTMHYRRMIITLQPGYSIPPLRKKRT

Q0ZIV5 50S ribosomal protein L23, chloroplastic

1.9e-39

87.1

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Query:  MDGIKYAVFTDKSIRLLGKNQYTSNVESGSTRTEIKHWVELFFGV------------KGRRMGPIMGHTMHYRRMIITLQPGYSIPPLRKKRT
        MDGIKYAVFTDKSIRLLGKNQYTSNVESGSTRTEIKHWVELFFGV            KGRRMGPIMGHTMHYRRMIITLQPGYSIPPLRKKRT
Subjt:  MDGIKYAVFTDKSIRLLGKNQYTSNVESGSTRTEIKHWVELFFGV------------KGRRMGPIMGHTMHYRRMIITLQPGYSIPPLRKKRT

Q4VZK6 50S ribosomal protein L23, chloroplastic

1.9e-39

87.1

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Query:  MDGIKYAVFTDKSIRLLGKNQYTSNVESGSTRTEIKHWVELFFGV------------KGRRMGPIMGHTMHYRRMIITLQPGYSIPPLRKKRT
        MDGIKYAVFTDKSIRLLGKNQYTSNVESGSTRTEIKHWVELFFGV            KGRRMGPIMGHTMHYRRMIITLQPGYSIPPLRKKRT
Subjt:  MDGIKYAVFTDKSIRLLGKNQYTSNVESGSTRTEIKHWVELFFGV------------KGRRMGPIMGHTMHYRRMIITLQPGYSIPPLRKKRT

Arabidopsis top hits

e value

%identity

Alignment

ATCG00840.1 ribosomal protein L23.1

3.8e-38

82.8

Show/hide

Query:  MDGIKYAVFTDKSIRLLGKNQYTSNVESGSTRTEIKHWVELFFGV------------KGRRMGPIMGHTMHYRRMIITLQPGYSIPPLRKKRT
        MDGIKYAVFTDKSIRLLGKNQYT NVESGSTRTEIKHWVELFFGV            K +RMGPI+GHTMHYRRMIITLQPGYSIPPLRKKRT
Subjt:  MDGIKYAVFTDKSIRLLGKNQYTSNVESGSTRTEIKHWVELFFGV------------KGRRMGPIMGHTMHYRRMIITLQPGYSIPPLRKKRT

ATCG01300.1 ribosomal protein L23

3.8e-38

82.8

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Query:  MDGIKYAVFTDKSIRLLGKNQYTSNVESGSTRTEIKHWVELFFGV------------KGRRMGPIMGHTMHYRRMIITLQPGYSIPPLRKKRT
        MDGIKYAVFTDKSIRLLGKNQYT NVESGSTRTEIKHWVELFFGV            K +RMGPI+GHTMHYRRMIITLQPGYSIPPLRKKRT
Subjt:  MDGIKYAVFTDKSIRLLGKNQYTSNVESGSTRTEIKHWVELFFGV------------KGRRMGPIMGHTMHYRRMIITLQPGYSIPPLRKKRT

Sequences

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CDS sequence

Show/hide CDS sequence

ATGGATGGAATCAAATATGCAGTATTTACAGACAAAAGTATTCGGTTATTGGGGAAAAATCAATATACTTCTAATGTCGAATCAGGATCAACTAGGACAGAAATAAAGCA
TTGGGTCGAACTCTTCTTTGGTGTCAAGGGTAGAAGAATGGGACCTATTATGGGACATACAATGCATTACAGACGTATGATCATTACGCTTCAACCGGGTTATTCTATTC
CACCTCTTAGAAAGAAAAGAACTTAA

mRNA sequence

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Protein sequence

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MDGIKYAVFTDKSIRLLGKNQYTSNVESGSTRTEIKHWVELFFGVKGRRMGPIMGHTMHYRRMIITLQPGYSIPPLRKKRT

Sed0012077 (gene) of Chayote v1 genome