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Sed0012081 (gene) of Chayote v1 genome

Gene IDSed0012081
OrganismSechium edule (Chayote v1)
DescriptionTransmembrane protein 230
Genome locationLG12:32152707..32153446
RNA-Seq ExpressionSed0012081
SyntenySed0012081
Gene Ontology termsGO:0005768 - endosome (cellular component)
GO:0005776 - autophagosome (cellular component)
GO:0005794 - Golgi apparatus (cellular component)
GO:0016021 - integral component of membrane (cellular component)
InterPro domainsIPR008590 - Transmembrane protein 230/134
IPR044234 - Transmembrane protein 230


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAG7021684.1 Transmembrane protein-like protein [Cucurbita argyrosperma subsp. argyrosperma]6.7e-4284.47Show/hide
Query:  MAYVDHSFSITDEDIMMVSPFAVSNRPPIKEIALSISLLVFGVFGIIIGIFMTSNQVGGDRVHGMFFSLLGALLFIPGFYYTRIAYYAYKGYKGFSFSNI
        MAYVDH+FSITDEDIMM SPF V+NRPPIKEIAL++SLL FG+ GI++GIFM SN+VGGDR HG+FFSLLGALLFIPGFYYTRIAYYAYKGYKGFSFSNI
Subjt:  MAYVDHSFSITDEDIMMVSPFAVSNRPPIKEIALSISLLVFGVFGIIIGIFMTSNQVGGDRVHGMFFSLLGALLFIPGFYYTRIAYYAYKGYKGFSFSNI

Query:  PAV
        P V
Subjt:  PAV

XP_004146339.1 transmembrane protein 230 [Cucumis sativus]5.1e-4285.44Show/hide
Query:  MAYVDHSFSITDEDIMMVSPFAVSNRPPIKEIALSISLLVFGVFGIIIGIFMTSNQVGGDRVHGMFFSLLGALLFIPGFYYTRIAYYAYKGYKGFSFSNI
        MAYVDH+FSITDEDIMM SPF V+NRPPIKEIAL++SLLVFG+ GII+G FM SN+VGGDRVHG+FFSLLG LLFIPGFYYTRIAYYAYKGYKGFSFSNI
Subjt:  MAYVDHSFSITDEDIMMVSPFAVSNRPPIKEIALSISLLVFGVFGIIIGIFMTSNQVGGDRVHGMFFSLLGALLFIPGFYYTRIAYYAYKGYKGFSFSNI

Query:  PAV
        P V
Subjt:  PAV

XP_008453547.1 PREDICTED: transmembrane protein 230-like [Cucumis melo]1.5e-4184.47Show/hide
Query:  MAYVDHSFSITDEDIMMVSPFAVSNRPPIKEIALSISLLVFGVFGIIIGIFMTSNQVGGDRVHGMFFSLLGALLFIPGFYYTRIAYYAYKGYKGFSFSNI
        MAYVDH+FSITDEDIMM SPF V+NRPPIKEIAL++SLLVFG+ GII+G FM SN+VGGDR HG+FFSLLG LLFIPGFYYTRIAYYAYKGYKGFSFSNI
Subjt:  MAYVDHSFSITDEDIMMVSPFAVSNRPPIKEIALSISLLVFGVFGIIIGIFMTSNQVGGDRVHGMFFSLLGALLFIPGFYYTRIAYYAYKGYKGFSFSNI

Query:  PAV
        P V
Subjt:  PAV

XP_022931504.1 transmembrane protein 230-like [Cucurbita moschata]5.1e-4285.44Show/hide
Query:  MAYVDHSFSITDEDIMMVSPFAVSNRPPIKEIALSISLLVFGVFGIIIGIFMTSNQVGGDRVHGMFFSLLGALLFIPGFYYTRIAYYAYKGYKGFSFSNI
        MAYVDH+FSITDEDIMM SPF V+NRPPIKEIAL++SLL FG+ GII+GIFM SN+VGGDR HG+FFSLLGALLFIPGFYYTRIAYYAYKGYKGFSFSNI
Subjt:  MAYVDHSFSITDEDIMMVSPFAVSNRPPIKEIALSISLLVFGVFGIIIGIFMTSNQVGGDRVHGMFFSLLGALLFIPGFYYTRIAYYAYKGYKGFSFSNI

Query:  PAV
        P V
Subjt:  PAV

XP_038879685.1 transmembrane protein 230 [Benincasa hispida]6.7e-4284.47Show/hide
Query:  MAYVDHSFSITDEDIMMVSPFAVSNRPPIKEIALSISLLVFGVFGIIIGIFMTSNQVGGDRVHGMFFSLLGALLFIPGFYYTRIAYYAYKGYKGFSFSNI
        MAYVDH+FSITDEDIMM SPF V+NRPPIKEIAL++SLLVFG+ GI++G FM SN+VGGDR HG+FFSLLGALLFIPGFYYTRIAYYAYKGYKGFSFSNI
Subjt:  MAYVDHSFSITDEDIMMVSPFAVSNRPPIKEIALSISLLVFGVFGIIIGIFMTSNQVGGDRVHGMFFSLLGALLFIPGFYYTRIAYYAYKGYKGFSFSNI

Query:  PAV
        P V
Subjt:  PAV

TrEMBL top hitse value%identityAlignment
A0A0A0LUC1 Transmembrane protein 2302.5e-4285.44Show/hide
Query:  MAYVDHSFSITDEDIMMVSPFAVSNRPPIKEIALSISLLVFGVFGIIIGIFMTSNQVGGDRVHGMFFSLLGALLFIPGFYYTRIAYYAYKGYKGFSFSNI
        MAYVDH+FSITDEDIMM SPF V+NRPPIKEIAL++SLLVFG+ GII+G FM SN+VGGDRVHG+FFSLLG LLFIPGFYYTRIAYYAYKGYKGFSFSNI
Subjt:  MAYVDHSFSITDEDIMMVSPFAVSNRPPIKEIALSISLLVFGVFGIIIGIFMTSNQVGGDRVHGMFFSLLGALLFIPGFYYTRIAYYAYKGYKGFSFSNI

Query:  PAV
        P V
Subjt:  PAV

A0A1S3BWL2 Transmembrane protein 2307.2e-4284.47Show/hide
Query:  MAYVDHSFSITDEDIMMVSPFAVSNRPPIKEIALSISLLVFGVFGIIIGIFMTSNQVGGDRVHGMFFSLLGALLFIPGFYYTRIAYYAYKGYKGFSFSNI
        MAYVDH+FSITDEDIMM SPF V+NRPPIKEIAL++SLLVFG+ GII+G FM SN+VGGDR HG+FFSLLG LLFIPGFYYTRIAYYAYKGYKGFSFSNI
Subjt:  MAYVDHSFSITDEDIMMVSPFAVSNRPPIKEIALSISLLVFGVFGIIIGIFMTSNQVGGDRVHGMFFSLLGALLFIPGFYYTRIAYYAYKGYKGFSFSNI

Query:  PAV
        P V
Subjt:  PAV

A0A6J1EUE9 Transmembrane protein 2302.5e-4285.44Show/hide
Query:  MAYVDHSFSITDEDIMMVSPFAVSNRPPIKEIALSISLLVFGVFGIIIGIFMTSNQVGGDRVHGMFFSLLGALLFIPGFYYTRIAYYAYKGYKGFSFSNI
        MAYVDH+FSITDEDIMM SPF V+NRPPIKEIAL++SLL FG+ GII+GIFM SN+VGGDR HG+FFSLLGALLFIPGFYYTRIAYYAYKGYKGFSFSNI
Subjt:  MAYVDHSFSITDEDIMMVSPFAVSNRPPIKEIALSISLLVFGVFGIIIGIFMTSNQVGGDRVHGMFFSLLGALLFIPGFYYTRIAYYAYKGYKGFSFSNI

Query:  PAV
        P V
Subjt:  PAV

A0A6J1I4W8 Transmembrane protein 2302.5e-4285.44Show/hide
Query:  MAYVDHSFSITDEDIMMVSPFAVSNRPPIKEIALSISLLVFGVFGIIIGIFMTSNQVGGDRVHGMFFSLLGALLFIPGFYYTRIAYYAYKGYKGFSFSNI
        MAYVDH+FSITDEDIMM SPF V+NRPPIKEIAL++SLL FG+ GII+GIFM SN+VGGDR HG+FFSLLGALLFIPGFYYTRIAYYAYKGYKGFSFSNI
Subjt:  MAYVDHSFSITDEDIMMVSPFAVSNRPPIKEIALSISLLVFGVFGIIIGIFMTSNQVGGDRVHGMFFSLLGALLFIPGFYYTRIAYYAYKGYKGFSFSNI

Query:  PAV
        P V
Subjt:  PAV

A0A6J1JDX9 Transmembrane protein 2304.7e-4182.52Show/hide
Query:  MAYVDHSFSITDEDIMMVSPFAVSNRPPIKEIALSISLLVFGVFGIIIGIFMTSNQVGGDRVHGMFFSLLGALLFIPGFYYTRIAYYAYKGYKGFSFSNI
        MAYVDH+FSI DEDI+M SPF V+NRPPIKEIAL++SLLVFG+ GI++G FM SN+VGGDR HG+FFSLLGALLFIPGFYYTRIAYYAYKGYKGFSFSNI
Subjt:  MAYVDHSFSITDEDIMMVSPFAVSNRPPIKEIALSISLLVFGVFGIIIGIFMTSNQVGGDRVHGMFFSLLGALLFIPGFYYTRIAYYAYKGYKGFSFSNI

Query:  PAV
        P V
Subjt:  PAV

SwissProt top hitse value%identityAlignment
Q5BJP5 Transmembrane protein 2307.0e-1046.75Show/hide
Query:  PIKEIALSISLLVFGVFGIIIGIFMTSNQV---GGDRVHGMFFSLLGALLFIPGFYYTRIAYYAYKGYKGFSFSNIP
        P K IAL+  L + G F IIIG  + S  +   G DR   +   ++G L+F+PGFY+ RIAYYA KGY+G+S+ +IP
Subjt:  PIKEIALSISLLVFGVFGIIIGIFMTSNQV---GGDRVHGMFFSLLGALLFIPGFYYTRIAYYAYKGYKGFSFSNIP

Q5R8X3 Transmembrane protein 2304.1e-1046.75Show/hide
Query:  PIKEIALSISLLVFGVFGIIIGIFMTSNQV---GGDRVHGMFFSLLGALLFIPGFYYTRIAYYAYKGYKGFSFSNIP
        P K IAL+  L + G F IIIG  + S  +   G DR   +   ++G L+F+PGFY+ RIAYYA KGY+G+S+ +IP
Subjt:  PIKEIALSISLLVFGVFGIIIGIFMTSNQV---GGDRVHGMFFSLLGALLFIPGFYYTRIAYYAYKGYKGFSFSNIP

Q5ZLH4 Transmembrane protein 2307.0e-1045.45Show/hide
Query:  PIKEIALSISLLVFGVFGIIIGIFMTSNQV---GGDRVHGMFFSLLGALLFIPGFYYTRIAYYAYKGYKGFSFSNIP
        P K IAL++ L + G F IIIG  + +  +   G DR   +   ++G L+F+PGFY+ RIAYYA KGY+G+S+ +IP
Subjt:  PIKEIALSISLLVFGVFGIIIGIFMTSNQV---GGDRVHGMFFSLLGALLFIPGFYYTRIAYYAYKGYKGFSFSNIP

Q8CIB6 Transmembrane protein 2307.0e-1046.75Show/hide
Query:  PIKEIALSISLLVFGVFGIIIGIFMTSNQV---GGDRVHGMFFSLLGALLFIPGFYYTRIAYYAYKGYKGFSFSNIP
        P K IAL+  L + G F IIIG  + S  +   G DR   +   ++G L+F+PGFY+ RIAYYA KGY+G+S+ +IP
Subjt:  PIKEIALSISLLVFGVFGIIIGIFMTSNQV---GGDRVHGMFFSLLGALLFIPGFYYTRIAYYAYKGYKGFSFSNIP

Q96A57 Transmembrane protein 2307.0e-1046.75Show/hide
Query:  PIKEIALSISLLVFGVFGIIIGIFMTSNQV---GGDRVHGMFFSLLGALLFIPGFYYTRIAYYAYKGYKGFSFSNIP
        P K IAL+  L + G F IIIG  + S  +   G DR   +   ++G L+F+PGFY+ RIAYYA KGY+G+S+ +IP
Subjt:  PIKEIALSISLLVFGVFGIIIGIFMTSNQV---GGDRVHGMFFSLLGALLFIPGFYYTRIAYYAYKGYKGFSFSNIP

Arabidopsis top hitse value%identityAlignment
AT2G19350.1 Eukaryotic protein of unknown function (DUF872)3.9e-4072.82Show/hide
Query:  MAYVDHSFSITDEDIMMVSPFAVSNRPPIKEIALSISLLVFGVFGIIIGIFMTSNQVGGDRVHGMFFSLLGALLFIPGFYYTRIAYYAYKGYKGFSFSNI
        MAYVDH+FSI+DED+M+ + + VSNRPP+KEI+L++ LLVFG  GI++G FM  N+VGGDR HG+FF +LG LLFIPGFYYTRIAYYAYKGYKGFSFSNI
Subjt:  MAYVDHSFSITDEDIMMVSPFAVSNRPPIKEIALSISLLVFGVFGIIIGIFMTSNQVGGDRVHGMFFSLLGALLFIPGFYYTRIAYYAYKGYKGFSFSNI

Query:  PAV
        P+V
Subjt:  PAV

AT3G29170.1 Eukaryotic protein of unknown function (DUF872)8.5e-1141.03Show/hide
Query:  NRPPIKEIALSISLLVFGVFGIIIGIFMTSNQVGGDRVHGMFFSLLGALLFIPGFYYTRIAYYAYKGYKGFSFSNIPA
        +R P K IAL++ LL  G   +++  F+    + GD   G    +LG L F+PGFY TRIAYY+++G +G+ F+ IP+
Subjt:  NRPPIKEIALSISLLVFGVFGIIIGIFMTSNQVGGDRVHGMFFSLLGALLFIPGFYYTRIAYYAYKGYKGFSFSNIPA

AT4G29850.1 Eukaryotic protein of unknown function (DUF872)2.3e-4074.76Show/hide
Query:  MAYVDHSFSITDEDIMMVSPFAVSNRPPIKEIALSISLLVFGVFGIIIGIFMTSNQVGGDRVHGMFFSLLGALLFIPGFYYTRIAYYAYKGYKGFSFSNI
        MAYVDH+FSITDEDIM+ + + V+NRPP+KEIAL+++LLVFG  GI+ G FM  N+VGGDR HG+FF +LG LLFIPGFYYTRIAYYAYKGYKGFSFSNI
Subjt:  MAYVDHSFSITDEDIMMVSPFAVSNRPPIKEIALSISLLVFGVFGIIIGIFMTSNQVGGDRVHGMFFSLLGALLFIPGFYYTRIAYYAYKGYKGFSFSNI

Query:  PAV
        P V
Subjt:  PAV


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGGCGTACGTGGACCATTCGTTTTCGATTACAGACGAGGACATTATGATGGTTTCTCCGTTCGCCGTCAGCAATCGCCCTCCGATCAAGGAAATCGCTCTTTCAATTTC
TCTTCTCGTGTTCGGCGTGTTTGGAATCATCATCGGGATCTTCATGACCAGCAATCAAGTCGGCGGCGATCGCGTTCACGGGATGTTTTTCTCGTTGTTGGGAGCTCTGT
TGTTTATTCCTGGTTTCTATTACACGAGGATTGCTTATTATGCTTACAAGGGTTACAAGGGATTCTCCTTCTCCAACATACCCGCTGTCTAA
mRNA sequenceShow/hide mRNA sequence
TGAAGTTTTTGCCCATTTTTTTTAACCCCACCTCCGATCAGAGAGCTTCTCTTTGCTTCGAAAATCAAAATTCCACCGTCGCCACCGCCACCGCCGCCACCGCCACCATC
ACCTCCACCGCCGCCGCCGCCGCCGCATTCTTCTGCAGATCGAAGCTTCAACATCCTCTTCTTCTTCCTACAACCCTAGAAAGATGGCGTACGTGGACCATTCGTTTTCG
ATTACAGACGAGGACATTATGATGGTTTCTCCGTTCGCCGTCAGCAATCGCCCTCCGATCAAGGAAATCGCTCTTTCAATTTCTCTTCTCGTGTTCGGCGTGTTTGGAAT
CATCATCGGGATCTTCATGACCAGCAATCAAGTCGGCGGCGATCGCGTTCACGGGATGTTTTTCTCGTTGTTGGGAGCTCTGTTGTTTATTCCTGGTTTCTATTACACGA
GGATTGCTTATTATGCTTACAAGGGTTACAAGGGATTCTCCTTCTCCAACATACCCGCTGTCTAAATGCTGCAAGTTCCTTCCATTTTCCTACACTTGTACATATTTTCT
TCTCTGTTTACATCGTTGCCCTGTTTTTTTCTCTATTGATTACTAATAACTATGCATTCGTTTATTGTCGATGAAGCCTGAATGATTGATTCTATGTGAATTTTTGTTGT
GC
Protein sequenceShow/hide protein sequence
MAYVDHSFSITDEDIMMVSPFAVSNRPPIKEIALSISLLVFGVFGIIIGIFMTSNQVGGDRVHGMFFSLLGALLFIPGFYYTRIAYYAYKGYKGFSFSNIPAV