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Sed0012103 (gene) of Chayote v1 genome

Gene IDSed0012103
OrganismSechium edule (Chayote v1)
DescriptionRING-CH-type domain-containing protein
Genome locationLG01:8517211..8520434
RNA-Seq ExpressionSed0012103
SyntenySed0012103
Gene Ontology termsGO:0016020 - membrane (cellular component)
GO:0008270 - zinc ion binding (molecular function)
InterPro domainsIPR011016 - Zinc finger, RING-CH-type
IPR013083 - Zinc finger, RING/FYVE/PHD-type


Homology Show/hide homology
GenBank top hitse value%identityAlignment
XP_004145266.2 uncharacterized protein LOC101212160 isoform X1 [Cucumis sativus]6.4e-5963.81Show/hide
Query:  PSSLSFRDAHSAADSSSDMSEPDDSDGQSWHSAVDSTAWGSDGEGQFSGEIEGVPAAEV----------------DLEANVHLGRVERNCRICHLELESG
        PSSL FRDA SAA S SDMS  DDSD QSWHS  DSTAWGS GEGQFSGEIEGVP AE+                DLE  VHLG++ER+CRICHLELES 
Subjt:  PSSLSFRDAHSAADSSSDMSEPDDSDGQSWHSAVDSTAWGSDGEGQFSGEIEGVPAAEV----------------DLEANVHLGRVERNCRICHLELESG

Query:  GGTD-SDSSIQLGCCCRGDLGIAHKQCAETWFKIKGNTICEICGSTAQNVASRQINGPSNLVL------------------------GIVNFLLACMLFA
        GG D SD+ IQLGCCCRGDLG AHKQCAETWFKIKGNTICEICG+TAQNVAS+QIN PSN V                          I+NFLLACML A
Subjt:  GGTD-SDSSIQLGCCCRGDLGIAHKQCAETWFKIKGNTICEICGSTAQNVASRQINGPSNLVL------------------------GIVNFLLACMLFA

Query:  FG---FFHFK
        F     FHFK
Subjt:  FG---FFHFK

XP_008457414.1 PREDICTED: uncharacterized protein LOC103497107 isoform X1 [Cucumis melo]5.4e-5863.33Show/hide
Query:  PSSLSFRDAHSAADSSSDMSEPDDSDGQSWHSAVDSTAWGSDGEGQFSGEIEGVPAAEV----------------DLEANVHLGRVERNCRICHLELESG
        PSSL FRDA SAA S SDMS  DDSD QSWHS  DSTAWGS GEGQFSGEIEGV  AE+                DLE  VHLG++ER+CRICHLELES 
Subjt:  PSSLSFRDAHSAADSSSDMSEPDDSDGQSWHSAVDSTAWGSDGEGQFSGEIEGVPAAEV----------------DLEANVHLGRVERNCRICHLELESG

Query:  GGTD-SDSSIQLGCCCRGDLGIAHKQCAETWFKIKGNTICEICGSTAQNVASRQINGPSNLVLG------------------------IVNFLLACMLFA
        GG D SD+ IQLGCCCRGDLG AHKQCAETWFKIKGNTICEICG+TAQNVAS+QIN PSN V                          I+NFLLACML A
Subjt:  GGTD-SDSSIQLGCCCRGDLGIAHKQCAETWFKIKGNTICEICGSTAQNVASRQINGPSNLVLG------------------------IVNFLLACMLFA

Query:  FG---FFHFK
        F     FHFK
Subjt:  FG---FFHFK

XP_008457415.1 PREDICTED: uncharacterized protein LOC103497107 isoform X2 [Cucumis melo]5.4e-5863.33Show/hide
Query:  PSSLSFRDAHSAADSSSDMSEPDDSDGQSWHSAVDSTAWGSDGEGQFSGEIEGVPAAEV----------------DLEANVHLGRVERNCRICHLELESG
        PSSL FRDA SAA S SDMS  DDSD QSWHS  DSTAWGS GEGQFSGEIEGV  AE+                DLE  VHLG++ER+CRICHLELES 
Subjt:  PSSLSFRDAHSAADSSSDMSEPDDSDGQSWHSAVDSTAWGSDGEGQFSGEIEGVPAAEV----------------DLEANVHLGRVERNCRICHLELESG

Query:  GGTD-SDSSIQLGCCCRGDLGIAHKQCAETWFKIKGNTICEICGSTAQNVASRQINGPSNLVLG------------------------IVNFLLACMLFA
        GG D SD+ IQLGCCCRGDLG AHKQCAETWFKIKGNTICEICG+TAQNVAS+QIN PSN V                          I+NFLLACML A
Subjt:  GGTD-SDSSIQLGCCCRGDLGIAHKQCAETWFKIKGNTICEICGSTAQNVASRQINGPSNLVLG------------------------IVNFLLACMLFA

Query:  FG---FFHFK
        F     FHFK
Subjt:  FG---FFHFK

XP_011658411.1 uncharacterized protein LOC101212160 isoform X2 [Cucumis sativus]6.4e-5963.81Show/hide
Query:  PSSLSFRDAHSAADSSSDMSEPDDSDGQSWHSAVDSTAWGSDGEGQFSGEIEGVPAAEV----------------DLEANVHLGRVERNCRICHLELESG
        PSSL FRDA SAA S SDMS  DDSD QSWHS  DSTAWGS GEGQFSGEIEGVP AE+                DLE  VHLG++ER+CRICHLELES 
Subjt:  PSSLSFRDAHSAADSSSDMSEPDDSDGQSWHSAVDSTAWGSDGEGQFSGEIEGVPAAEV----------------DLEANVHLGRVERNCRICHLELESG

Query:  GGTD-SDSSIQLGCCCRGDLGIAHKQCAETWFKIKGNTICEICGSTAQNVASRQINGPSNLVL------------------------GIVNFLLACMLFA
        GG D SD+ IQLGCCCRGDLG AHKQCAETWFKIKGNTICEICG+TAQNVAS+QIN PSN V                          I+NFLLACML A
Subjt:  GGTD-SDSSIQLGCCCRGDLGIAHKQCAETWFKIKGNTICEICGSTAQNVASRQINGPSNLVL------------------------GIVNFLLACMLFA

Query:  FG---FFHFK
        F     FHFK
Subjt:  FG---FFHFK

XP_038895035.1 uncharacterized protein LOC120083374 [Benincasa hispida]4.9e-5963.33Show/hide
Query:  PSSLSFRDAHSAADSSSDMSEPDDSDGQSWHSAVDSTAWGSDGEGQFSGEIEGVPAAEV----------------DLEANVHLGRVERNCRICHLELESG
        PSS+ FRDA SAA S SDMS  DDSD QSWHS  DSTAWGS GEGQFSGEIEGVP AE+                DLE  VHLG++ER+CRICHLELESG
Subjt:  PSSLSFRDAHSAADSSSDMSEPDDSDGQSWHSAVDSTAWGSDGEGQFSGEIEGVPAAEV----------------DLEANVHLGRVERNCRICHLELESG

Query:  GGTDS-DSSIQLGCCCRGDLGIAHKQCAETWFKIKGNTICEICGSTAQNVASRQINGPSNLVLG------------------------IVNFLLACMLFA
        GG D+ D+ IQLGCCCRGDLG AHKQCAETWFKIKGNTICEICG+TAQNVAS+QIN PSN V                          I+NFLLACML A
Subjt:  GGTDS-DSSIQLGCCCRGDLGIAHKQCAETWFKIKGNTICEICGSTAQNVASRQINGPSNLVLG------------------------IVNFLLACMLFA

Query:  FG---FFHFK
        F     FHFK
Subjt:  FG---FFHFK

TrEMBL top hitse value%identityAlignment
A0A0A0M0P0 RING-CH-type domain-containing protein3.1e-5963.81Show/hide
Query:  PSSLSFRDAHSAADSSSDMSEPDDSDGQSWHSAVDSTAWGSDGEGQFSGEIEGVPAAEV----------------DLEANVHLGRVERNCRICHLELESG
        PSSL FRDA SAA S SDMS  DDSD QSWHS  DSTAWGS GEGQFSGEIEGVP AE+                DLE  VHLG++ER+CRICHLELES 
Subjt:  PSSLSFRDAHSAADSSSDMSEPDDSDGQSWHSAVDSTAWGSDGEGQFSGEIEGVPAAEV----------------DLEANVHLGRVERNCRICHLELESG

Query:  GGTD-SDSSIQLGCCCRGDLGIAHKQCAETWFKIKGNTICEICGSTAQNVASRQINGPSNLVL------------------------GIVNFLLACMLFA
        GG D SD+ IQLGCCCRGDLG AHKQCAETWFKIKGNTICEICG+TAQNVAS+QIN PSN V                          I+NFLLACML A
Subjt:  GGTD-SDSSIQLGCCCRGDLGIAHKQCAETWFKIKGNTICEICGSTAQNVASRQINGPSNLVL------------------------GIVNFLLACMLFA

Query:  FG---FFHFK
        F     FHFK
Subjt:  FG---FFHFK

A0A1S3C517 uncharacterized protein LOC103497107 isoform X22.6e-5863.33Show/hide
Query:  PSSLSFRDAHSAADSSSDMSEPDDSDGQSWHSAVDSTAWGSDGEGQFSGEIEGVPAAEV----------------DLEANVHLGRVERNCRICHLELESG
        PSSL FRDA SAA S SDMS  DDSD QSWHS  DSTAWGS GEGQFSGEIEGV  AE+                DLE  VHLG++ER+CRICHLELES 
Subjt:  PSSLSFRDAHSAADSSSDMSEPDDSDGQSWHSAVDSTAWGSDGEGQFSGEIEGVPAAEV----------------DLEANVHLGRVERNCRICHLELESG

Query:  GGTD-SDSSIQLGCCCRGDLGIAHKQCAETWFKIKGNTICEICGSTAQNVASRQINGPSNLVLG------------------------IVNFLLACMLFA
        GG D SD+ IQLGCCCRGDLG AHKQCAETWFKIKGNTICEICG+TAQNVAS+QIN PSN V                          I+NFLLACML A
Subjt:  GGTD-SDSSIQLGCCCRGDLGIAHKQCAETWFKIKGNTICEICGSTAQNVASRQINGPSNLVLG------------------------IVNFLLACMLFA

Query:  FG---FFHFK
        F     FHFK
Subjt:  FG---FFHFK

A0A1S3C6R6 uncharacterized protein LOC103497107 isoform X12.6e-5863.33Show/hide
Query:  PSSLSFRDAHSAADSSSDMSEPDDSDGQSWHSAVDSTAWGSDGEGQFSGEIEGVPAAEV----------------DLEANVHLGRVERNCRICHLELESG
        PSSL FRDA SAA S SDMS  DDSD QSWHS  DSTAWGS GEGQFSGEIEGV  AE+                DLE  VHLG++ER+CRICHLELES 
Subjt:  PSSLSFRDAHSAADSSSDMSEPDDSDGQSWHSAVDSTAWGSDGEGQFSGEIEGVPAAEV----------------DLEANVHLGRVERNCRICHLELESG

Query:  GGTD-SDSSIQLGCCCRGDLGIAHKQCAETWFKIKGNTICEICGSTAQNVASRQINGPSNLVLG------------------------IVNFLLACMLFA
        GG D SD+ IQLGCCCRGDLG AHKQCAETWFKIKGNTICEICG+TAQNVAS+QIN PSN V                          I+NFLLACML A
Subjt:  GGTD-SDSSIQLGCCCRGDLGIAHKQCAETWFKIKGNTICEICGSTAQNVASRQINGPSNLVLG------------------------IVNFLLACMLFA

Query:  FG---FFHFK
        F     FHFK
Subjt:  FG---FFHFK

A0A5D3BFF6 E3 ubiquitin-protein ligase MARCH12.6e-5863.33Show/hide
Query:  PSSLSFRDAHSAADSSSDMSEPDDSDGQSWHSAVDSTAWGSDGEGQFSGEIEGVPAAEV----------------DLEANVHLGRVERNCRICHLELESG
        PSSL FRDA SAA S SDMS  DDSD QSWHS  DSTAWGS GEGQFSGEIEGV  AE+                DLE  VHLG++ER+CRICHLELES 
Subjt:  PSSLSFRDAHSAADSSSDMSEPDDSDGQSWHSAVDSTAWGSDGEGQFSGEIEGVPAAEV----------------DLEANVHLGRVERNCRICHLELESG

Query:  GGTD-SDSSIQLGCCCRGDLGIAHKQCAETWFKIKGNTICEICGSTAQNVASRQINGPSNLVLG------------------------IVNFLLACMLFA
        GG D SD+ IQLGCCCRGDLG AHKQCAETWFKIKGNTICEICG+TAQNVAS+QIN PSN V                          I+NFLLACML A
Subjt:  GGTD-SDSSIQLGCCCRGDLGIAHKQCAETWFKIKGNTICEICGSTAQNVASRQINGPSNLVLG------------------------IVNFLLACMLFA

Query:  FG---FFHFK
        F     FHFK
Subjt:  FG---FFHFK

A0A6J1I103 uncharacterized protein LOC1114695214.6e-5560.09Show/hide
Query:  PSSLSFRDAHSAA---DSSSDMSEPDDSDGQSWHSAVDSTAWGSDGEGQFSGEIEGVPAAEV----------------DLEANVHLGRVERNCRICHLEL
        PSSL +RDA SAA    SSSD+S  DDSD QSWHS  DSTAWGS G+G FSGEIEGVP AE                 DLE  VHLG++ER+CRICHLEL
Subjt:  PSSLSFRDAHSAA---DSSSDMSEPDDSDGQSWHSAVDSTAWGSDGEGQFSGEIEGVPAAEV----------------DLEANVHLGRVERNCRICHLEL

Query:  ESGGGTD-SDSSIQLGCCCRGDLGIAHKQCAETWFKIKGNTICEICGSTAQNVASRQINGPSNLVLG------------------------IVNFLLACM
        ESGGG D +D+ I LGCCCRGDLG AHK CAETWFKIKGNTICEICG+ AQNVAS+QIN PSNL                           I+NFLLACM
Subjt:  ESGGGTD-SDSSIQLGCCCRGDLGIAHKQCAETWFKIKGNTICEICGSTAQNVASRQINGPSNLVLG------------------------IVNFLLACM

Query:  LFAFG---FFHFK
        L AF     FHFK
Subjt:  LFAFG---FFHFK

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
AT2G34200.1 RING/FYVE/PHD zinc finger superfamily protein1.6e-1550Show/hide
Query:  ERNCRICHL---ELESGGGTDSDSS---IQLGCCCRGDLGIAHKQCAETWFKIKGNTICEICGSTAQNVASR
        ER CRICH    +     G D   S   I++GC C+ +LG+AH  CAE WFK++GN++CEICG TA+NV  R
Subjt:  ERNCRICHL---ELESGGGTDSDSS---IQLGCCCRGDLGIAHKQCAETWFKIKGNTICEICGSTAQNVASR

AT2G37950.1 RING/FYVE/PHD zinc finger superfamily protein1.5e-1835.26Show/hide
Query:  HSAADSSSDMS--EPDDSDGQSWHSAVDSTAWGS-DGEGQFSGEIEGVPA-AEVDLEANVHLGRVERNCRICHLELESGGGTDSDSSIQLGCCCRGDLGI
        H  +   SD+S    D  D  S +S   ST  GS + EG  S ++  V + +  +++ +      E++CRICHL +E+ GG     +I+LGC C+ DL +
Subjt:  HSAADSSSDMS--EPDDSDGQSWHSAVDSTAWGS-DGEGQFSGEIEGVPA-AEVDLEANVHLGRVERNCRICHLELESGGGTDSDSSIQLGCCCRGDLGI

Query:  AHKQCAETWFKIKGNTICEICGSTAQNVA-----------SRQINGPSNLVLG----------------IVNFLLACMLFAF---GFFHF
        AH+QCAETWFKIKG+  CEIC S A+NV             R++        G                +VN +LACM+F F     FHF
Subjt:  AHKQCAETWFKIKGNTICEICGSTAQNVA-----------SRQINGPSNLVLG----------------IVNFLLACMLFAF---GFFHF

AT5G01070.2 RING/FYVE/PHD zinc finger superfamily protein2.2e-1736.96Show/hide
Query:  SDMSEPDDSD---GQSWHSAVDSTAWGSDGEGQFSGEIEGVPAAEVDLEANVHLGRVERNCRICHLELESGGGTDSDSSIQLGCCCRGDLGIAHKQCAET
        SD+S  D S       +HSAV S      GE + + +++     E     ++  G  E++CRICHL LES      D  + LGC C+ DLG  HKQCA+T
Subjt:  SDMSEPDDSD---GQSWHSAVDSTAWGSDGEGQFSGEIEGVPAAEVDLEANVHLGRVERNCRICHLELESGGGTDSDSSIQLGCCCRGDLGIAHKQCAET

Query:  WFKIKGNTICEICGSTAQNV--ASRQI---------------NGPSNLVLG------------IVNFLLACMLFAF---GFFHF
        WFKIKGN  CEIC S AQN      +I               N P+ +                +NFLL CM+ AF    FFHF
Subjt:  WFKIKGNTICEICGSTAQNV--ASRQI---------------NGPSNLVLG------------IVNFLLACMLFAF---GFFHF

AT5G05830.1 RING/FYVE/PHD zinc finger superfamily protein1.4e-2444.22Show/hide
Query:  VPAAEVDLEAN-----VHLGRVERNCRICHLELESGGGTDSDSSIQLGCCCRGDLGIAHKQCAETWFKIKGNTICEICGSTAQNV----------ASRQI
        V + E+DLE       VHL + ER+CRICH+ L++    +S   I+LGC C+ DL  AHK CAETWFKIKGN ICE+CGS A NV          +  + 
Subjt:  VPAAEVDLEAN-----VHLGRVERNCRICHLELESGGGTDSDSSIQLGCCCRGDLGIAHKQCAETWFKIKGNTICEICGSTAQNV----------ASRQI

Query:  NGPSNLVL-----------------GIVNFLLACMLFAF---GFFHF
        NG  NL L                   +NFLLACM+FAF     FHF
Subjt:  NGPSNLVL-----------------GIVNFLLACMLFAF---GFFHF

AT5G59000.1 RING/FYVE/PHD zinc finger superfamily protein2.4e-1933.93Show/hide
Query:  AADSSSDMSEPDDSDGQSWHSAVDSTAWGSDGEGQFSGEIEGVPAAEVDLEANVHLGRVE--------------RNCRICHLELESGGGT---------D
        A  S   ++ P DS   S   ++D  +   D   Q   E  GVPA E  L +     R                R+CRICHL LE+             D
Subjt:  AADSSSDMSEPDDSDGQSWHSAVDSTAWGSDGEGQFSGEIEGVPAAEVDLEANVHLGRVE--------------RNCRICHLELESGGGT---------D

Query:  SDSS---------------------IQLGCCCRGDLGIAHKQCAETWFKIKGNTICEICGSTAQNVASRQINGPSNLVL---------------------
        SD                       +QLGC C+GDLG+AH +CAETWFKIKGN  CEICG+ A NVA  Q N  S                         
Subjt:  SDSS---------------------IQLGCCCRGDLGIAHKQCAETWFKIKGNTICEICGSTAQNVASRQINGPSNLVL---------------------

Query:  -GIVNFLLACMLFAF---GFFHFK
          ++NFLLA M+FAF     FHFK
Subjt:  -GIVNFLLACMLFAF---GFFHFK


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGTTTTTGGAATGGATTCTGAATTTCGATTTCGTATGGATGTCGTCGGCGATTGAAATTCCCAGTTCCCTGTCGTTTCGCGATGCTCATTCAGCAGCTGATAGCAGCAG
CGACATGTCGGAACCTGACGATTCCGACGGCCAGTCGTGGCACTCGGCTGTCGACTCCACGGCCTGGGGATCTGACGGCGAGGGCCAGTTTTCCGGCGAGATAGAGGGCG
TTCCGGCCGCCGAGGTGGATTTGGAGGCGAATGTGCATTTGGGAAGGGTTGAAAGGAATTGCAGGATTTGTCACTTGGAGCTTGAAAGCGGTGGAGGAACAGATTCTGAT
TCTTCAATTCAGCTTGGTTGTTGCTGTCGAGGTGATTTGGGTATTGCCCACAAGCAATGTGCTGAGACTTGGTTCAAGATCAAGGGAAATACAATTTGCGAGATATGTGG
GTCAACTGCACAAAATGTTGCAAGTCGACAAATAAATGGACCAAGCAATCTGGTTCTGGGCATTGTAAACTTTCTTCTTGCTTGCATGCTCTTTGCATTTGGGTTTTTTC
ACTTCAAGTGA
mRNA sequenceShow/hide mRNA sequence
AGTTCTTTTGCATCTCCTTCAATAATCTTTGTTTTTTTTTTTTACTACGTATTAGGAAAAAGGGAACAAATACAAATTGTAATCATTCGATTCAATAATCTCTGTTCTTA
GCCAAGCTTTTTTTTCTCTCAGTTTATTGTTTTTAATTTAAAGTTTCCTTTTCTCTTCCAACAACAGCCGAAACTGACACTCCGAGACAGAGCTTCACAGTGTGCCTGTT
ATTTGTTGGAGAGAAGACCCCACGTTTGATCTTTCTCTTAATGGGTTTTTATCACACACTAATCTGTAATGGGTTTTAATCTTCCGAGTGTGACGAAAATTTCATACTCA
TGTTTTTGGAATGGATTCTGAATTTCGATTTCGTATGGATGTCGTCGGCGATTGAAATTCCCAGTTCCCTGTCGTTTCGCGATGCTCATTCAGCAGCTGATAGCAGCAGC
GACATGTCGGAACCTGACGATTCCGACGGCCAGTCGTGGCACTCGGCTGTCGACTCCACGGCCTGGGGATCTGACGGCGAGGGCCAGTTTTCCGGCGAGATAGAGGGCGT
TCCGGCCGCCGAGGTGGATTTGGAGGCGAATGTGCATTTGGGAAGGGTTGAAAGGAATTGCAGGATTTGTCACTTGGAGCTTGAAAGCGGTGGAGGAACAGATTCTGATT
CTTCAATTCAGCTTGGTTGTTGCTGTCGAGGTGATTTGGGTATTGCCCACAAGCAATGTGCTGAGACTTGGTTCAAGATCAAGGGAAATACAATTTGCGAGATATGTGGG
TCAACTGCACAAAATGTTGCAAGTCGACAAATAAATGGACCAAGCAATCTGGTTCTGGGCATTGTAAACTTTCTTCTTGCTTGCATGCTCTTTGCATTTGGGTTTTTTCA
CTTCAAGTGAATGCCATAAACTTTAGGAAGATCACTTACACCTACTAAAGGAAGAAAATTAGTGAAGATTGAGATTTTGGGTTCTTCAGGCTTTTGTTTACATTTACACT
TCAGTGTGTTTAGTTAATTTTGATGAGGTTTTGTATCATTAGGCATTTATTTCTTAGTTGTGGTATGGTGAAAGCTTAGGGATCTATTAAGGATAAGTACATCTCACTAT
ATATATGTGGCTCGATTTTTTTGCCCTTACAAGAGCCACAAGAAGAGAGGACAGACTTGAG
Protein sequenceShow/hide protein sequence
MFLEWILNFDFVWMSSAIEIPSSLSFRDAHSAADSSSDMSEPDDSDGQSWHSAVDSTAWGSDGEGQFSGEIEGVPAAEVDLEANVHLGRVERNCRICHLELESGGGTDSD
SSIQLGCCCRGDLGIAHKQCAETWFKIKGNTICEICGSTAQNVASRQINGPSNLVLGIVNFLLACMLFAFGFFHFK