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Sed0012149 (gene) of Chayote v1 genome

Gene IDSed0012149
OrganismSechium edule (Chayote v1)
DescriptionE3 ubiquitin-protein ligase RNF181 homolog
Genome locationLG06:38511540..38514611
RNA-Seq ExpressionSed0012149
SyntenySed0012149
Gene Ontology termsNA
InterPro domainsIPR001841 - Zinc finger, RING-type
IPR013083 - Zinc finger, RING/FYVE/PHD-type


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAB1199952.1 Protein preY, mitochondrial [Morella rubra]9.6e-4344.35Show/hide
Query:  MVRISKALLKAAASSGVIKTLPDNLVCPLSKQPLRYCEASNSLISDTIGVSFPIKGGIPCLVPKDGRIIETDD---------------------------
        MVR S ALLK  A +G+ KTL + LVCPLSKQPLRYC  +NSLISD +GVSFPIK GIPCLVPKDG+IIE DD                           
Subjt:  MVRISKALLKAAASSGVIKTLPDNLVCPLSKQPLRYCEASNSLISDTIGVSFPIKGGIPCLVPKDGRIIETDD---------------------------

Query:  ---ALKAHPTLDDAMERKW-----------------------------------CSVCLSKVIEGEEARVLPCQHEFHKICVERWFHECQKQKTCPICRF
            L+A P L +A    +                                   C VCLS++ +G++ R+LPC HEFHK+CV+RWF+ C  +KTCP+CRF
Subjt:  ---ALKAHPTLDDAMERKW-----------------------------------CSVCLSKVIEGEEARVLPCQHEFHKICVERWFHECQKQKTCPICRF

Query:  WIRNEDG-QTTEVLTEEMVIWFTSFHMIGY
         +  ED  +  E LT+EMVIWF+SFH+ G+
Subjt:  WIRNEDG-QTTEVLTEEMVIWFTSFHMIGY

KAF5753062.1 putative Protein preY mitochondrial precursor [Tripterygium wilfordii]1.9e-4348.06Show/hide
Query:  MVRISKALLKAAASSGVIKTLPDNLVCPLSKQPLRYCEASNSLISDTIGVSFPIKGGIPCLVPKDGRIIETDDALKAHPTLD------------------
        MVR+SK+L++  A +G+ KTL + LVCPLSKQPLRYCE +NSLISD+IGVSFPIK GIPCLVP+DG+I++TD+  K+    D                  
Subjt:  MVRISKALLKAAASSGVIKTLPDNLVCPLSKQPLRYCEASNSLISDTIGVSFPIKGGIPCLVPKDGRIIETDDALKAHPTLD------------------

Query:  ---DAMERK----------------WCSVCLSKVIEGEEARVLPCQHEFHKICVERWFHECQKQKTCPICRFWIRNEDGQ-----TTEVLTEEMVIWFTS
            A+E K                 C VCL K  EGE+ RVLPC+H FHK+CV+RWF  C  ++TCP+CRF +  E+ +     + E  TEEMVIWF+S
Subjt:  ---DAMERK----------------WCSVCLSKVIEGEEARVLPCQHEFHKICVERWFHECQKQKTCPICRFWIRNEDGQ-----TTEVLTEEMVIWFTS

Query:  FHMIGY
        FH+ G+
Subjt:  FHMIGY

KAG6603894.1 hypothetical protein SDJN03_04503, partial [Cucurbita argyrosperma subsp. sororia]2.4e-6567.36Show/hide
Query:  MVRISKALLKAAASSGVIKTLPDNLVCPLSKQPLRYCEASNSLISDTIGVSFPIKGGIPCLVPKDGRIIETDDALK------------------------
        MVRIS++LLK  A SG+ KTL + LVCPLSKQPLRYCEASNSLISDTI VSFPI+GG+PCLVPK+GRIIETDD LK                        
Subjt:  MVRISKALLKAAASSGVIKTLPDNLVCPLSKQPLRYCEASNSLISDTIGVSFPIKGGIPCLVPKDGRIIETDDALK------------------------

Query:  ----AHPTLDD-AMERKWCSVCLSKVIEGEEARVLPCQHEFHKICVERWFHECQKQKTCPICRFWIRNEDGQTTEVLTEEMVIWFTSFHMIGY
            AHPTLDD AMER+WCSVCLS V+E + A++LPCQHEFHKICVERWFHECQ QKTC ICRFW+ +ED Q TEVLTEEMVIW TS H+I Y
Subjt:  ----AHPTLDD-AMERKWCSVCLSKVIEGEEARVLPCQHEFHKICVERWFHECQKQKTCPICRFWIRNEDGQTTEVLTEEMVIWFTSFHMIGY

XP_022132660.1 E3 ubiquitin-protein ligase RNF181 homolog [Momordica charantia]1.8e-3678.89Show/hide
Query:  AHPTLDDAMERKWCSVCLSKVIEGEEARV--LPCQHEFHKICVERWFHECQKQKTCPICRFWIRNEDGQTTEVLTEEMVIWFTSFHMIGY
        AHPTL DA+ R+WCSVCLSKV+EGEE+RV  LPC HEFHKIC++RWFHEC  QKTCPIC+FW+R++DGQTTEVLTEEMVIWFTSFH++GY
Subjt:  AHPTLDDAMERKWCSVCLSKVIEGEEARV--LPCQHEFHKICVERWFHECQKQKTCPICRFWIRNEDGQTTEVLTEEMVIWFTSFHMIGY

XP_022977421.1 uncharacterized protein LOC111477769 isoform X1 [Cucurbita maxima]5.4e-5466.28Show/hide
Query:  MVRISKALLKAAASSGVIKTLPDNLVCPLSKQPLRYCEASNSLISDTIGVSFPIK-------GGIPCLVPKDGRIIETDDALKAHPTLDD-AMERKWCSV
        MVRIS++LLK  A SG+ KTL + LVCPLSKQPLRYCEASNSLISDTI VSFP+          I     K  R  E      AHPTLDD A+ER+WCSV
Subjt:  MVRISKALLKAAASSGVIKTLPDNLVCPLSKQPLRYCEASNSLISDTIGVSFPIK-------GGIPCLVPKDGRIIETDDALKAHPTLDD-AMERKWCSV

Query:  CLSKVIEGEEARVLPCQHEFHKICVERWFHECQKQKTCPICRFWIRNEDGQTTEVLTEEMVIWFTSFHMIGY
        C S V+E + A++LPCQHEFHKICVERWFHECQ QKTCPIC+FW+R+ED Q TEVLTEEMVIW TS H+I Y
Subjt:  CLSKVIEGEEARVLPCQHEFHKICVERWFHECQKQKTCPICRFWIRNEDGQTTEVLTEEMVIWFTSFHMIGY

TrEMBL top hitse value%identityAlignment
A0A5A7SJZ8 UPF0434 protein6.8e-2675.86Show/hide
Query:  MVRISKALLKAAASSGVIKTLPDNLVCPLSKQPLRYCEASNSLISDTIGVSFPIKGGIPCLVPKDGRIIETDDALKAHPTLDDAMER
        MVRISKALLK  ASSG   TL   LVCPLSKQPLRYCEASNSLISDTIGVSFPI+ GIPCLVPK+GRIIE DDALK   T++   E+
Subjt:  MVRISKALLKAAASSGVIKTLPDNLVCPLSKQPLRYCEASNSLISDTIGVSFPIKGGIPCLVPKDGRIIETDDALKAHPTLDDAMER

A0A6A1UIA7 Protein preY, mitochondrial4.7e-4344.35Show/hide
Query:  MVRISKALLKAAASSGVIKTLPDNLVCPLSKQPLRYCEASNSLISDTIGVSFPIKGGIPCLVPKDGRIIETDD---------------------------
        MVR S ALLK  A +G+ KTL + LVCPLSKQPLRYC  +NSLISD +GVSFPIK GIPCLVPKDG+IIE DD                           
Subjt:  MVRISKALLKAAASSGVIKTLPDNLVCPLSKQPLRYCEASNSLISDTIGVSFPIKGGIPCLVPKDGRIIETDD---------------------------

Query:  ---ALKAHPTLDDAMERKW-----------------------------------CSVCLSKVIEGEEARVLPCQHEFHKICVERWFHECQKQKTCPICRF
            L+A P L +A    +                                   C VCLS++ +G++ R+LPC HEFHK+CV+RWF+ C  +KTCP+CRF
Subjt:  ---ALKAHPTLDDAMERKW-----------------------------------CSVCLSKVIEGEEARVLPCQHEFHKICVERWFHECQKQKTCPICRF

Query:  WIRNEDG-QTTEVLTEEMVIWFTSFHMIGY
         +  ED  +  E LT+EMVIWF+SFH+ G+
Subjt:  WIRNEDG-QTTEVLTEEMVIWFTSFHMIGY

A0A6J1BT35 E3 ubiquitin-protein ligase RNF181 homolog8.5e-3778.89Show/hide
Query:  AHPTLDDAMERKWCSVCLSKVIEGEEARV--LPCQHEFHKICVERWFHECQKQKTCPICRFWIRNEDGQTTEVLTEEMVIWFTSFHMIGY
        AHPTL DA+ R+WCSVCLSKV+EGEE+RV  LPC HEFHKIC++RWFHEC  QKTCPIC+FW+R++DGQTTEVLTEEMVIWFTSFH++GY
Subjt:  AHPTLDDAMERKWCSVCLSKVIEGEEARV--LPCQHEFHKICVERWFHECQKQKTCPICRFWIRNEDGQTTEVLTEEMVIWFTSFHMIGY

A0A6J1IJV3 uncharacterized protein LOC111477769 isoform X12.6e-5466.28Show/hide
Query:  MVRISKALLKAAASSGVIKTLPDNLVCPLSKQPLRYCEASNSLISDTIGVSFPIK-------GGIPCLVPKDGRIIETDDALKAHPTLDD-AMERKWCSV
        MVRIS++LLK  A SG+ KTL + LVCPLSKQPLRYCEASNSLISDTI VSFP+          I     K  R  E      AHPTLDD A+ER+WCSV
Subjt:  MVRISKALLKAAASSGVIKTLPDNLVCPLSKQPLRYCEASNSLISDTIGVSFPIK-------GGIPCLVPKDGRIIETDDALKAHPTLDD-AMERKWCSV

Query:  CLSKVIEGEEARVLPCQHEFHKICVERWFHECQKQKTCPICRFWIRNEDGQTTEVLTEEMVIWFTSFHMIGY
        C S V+E + A++LPCQHEFHKICVERWFHECQ QKTCPIC+FW+R+ED Q TEVLTEEMVIW TS H+I Y
Subjt:  CLSKVIEGEEARVLPCQHEFHKICVERWFHECQKQKTCPICRFWIRNEDGQTTEVLTEEMVIWFTSFHMIGY

A0A7J7E325 RING-type domain-containing protein9.4e-4448.06Show/hide
Query:  MVRISKALLKAAASSGVIKTLPDNLVCPLSKQPLRYCEASNSLISDTIGVSFPIKGGIPCLVPKDGRIIETDDALKAHPTLD------------------
        MVR+SK+L++  A +G+ KTL + LVCPLSKQPLRYCE +NSLISD+IGVSFPIK GIPCLVP+DG+I++TD+  K+    D                  
Subjt:  MVRISKALLKAAASSGVIKTLPDNLVCPLSKQPLRYCEASNSLISDTIGVSFPIKGGIPCLVPKDGRIIETDDALKAHPTLD------------------

Query:  ---DAMERK----------------WCSVCLSKVIEGEEARVLPCQHEFHKICVERWFHECQKQKTCPICRFWIRNEDGQ-----TTEVLTEEMVIWFTS
            A+E K                 C VCL K  EGE+ RVLPC+H FHK+CV+RWF  C  ++TCP+CRF +  E+ +     + E  TEEMVIWF+S
Subjt:  ---DAMERK----------------WCSVCLSKVIEGEEARVLPCQHEFHKICVERWFHECQKQKTCPICRFWIRNEDGQ-----TTEVLTEEMVIWFTS

Query:  FHMIGY
        FH+ G+
Subjt:  FHMIGY

SwissProt top hitse value%identityAlignment
Q07G42 E3 ubiquitin-protein ligase RNF124.2e-0932.65Show/hide
Query:  GVSFPIKGGIPCLVPKDGRIIETDDALKAHPTLDDAMER------------KWCSVCLSKVIEGEEARVLPCQHEFHKICVERWFHECQKQKTCPICR
        GV+F   G +P L      ++  DD  +      + ++             K CSVC+++  EG + R LPC HE+H  C++RW  E     TCPICR
Subjt:  GVSFPIKGGIPCLVPKDGRIIETDDALKAHPTLDDAMER------------KWCSVCLSKVIEGEEARVLPCQHEFHKICVERWFHECQKQKTCPICR

Q5M8Z2 Protein preY, mitochondrial4.2e-0950.94Show/hide
Query:  TLPDNLVCPLSKQPLRYCEASNSLISDTIGVSFPIKGGIPCLVPKDGRIIETD
        TL   LVCPLS++ LRY E++N LI+D +G+++PI  GIP ++P+D R+I  D
Subjt:  TLPDNLVCPLSKQPLRYCEASNSLISDTIGVSFPIKGGIPCLVPKDGRIIETD

Q5SSZ7 E3 ubiquitin-protein ligase ZNRF37.2e-0944.26Show/hide
Query:  CSVCLSKVIEGEEARVLPCQHEFHKICVERWFHECQKQKTCPICRFWIRNEDGQTTEVLTE
        C++CL K I+GEE RV+PC H FH+ CV+ W     +  TCP CR  I  + G    V  E
Subjt:  CSVCLSKVIEGEEARVLPCQHEFHKICVERWFHECQKQKTCPICRFWIRNEDGQTTEVLTE

Q9ULT6 E3 ubiquitin-protein ligase ZNRF33.2e-0944.26Show/hide
Query:  CSVCLSKVIEGEEARVLPCQHEFHKICVERWFHECQKQKTCPICRFWIRNEDGQTTEVLTE
        C++CL K I+GEE RV+PC H FH+ CV+ W     +  TCP CR  I  + G  + V  E
Subjt:  CSVCLSKVIEGEEARVLPCQHEFHKICVERWFHECQKQKTCPICRFWIRNEDGQTTEVLTE

Q9ZT50 E3 ubiquitin-protein ligase RHA2A5.5e-0953.85Show/hide
Query:  CSVCLSKVIEGEEARVLPCQHEFHKICVERWFHECQKQKTCPICRFWIRNED
        C VCLSK+ EGEE R L C+H FHK C+E W H  Q   TCP+CR  + ++D
Subjt:  CSVCLSKVIEGEEARVLPCQHEFHKICVERWFHECQKQKTCPICRFWIRNED

Arabidopsis top hitse value%identityAlignment
AT1G15100.1 RING-H2 finger A2A3.9e-1053.85Show/hide
Query:  CSVCLSKVIEGEEARVLPCQHEFHKICVERWFHECQKQKTCPICRFWIRNED
        C VCLSK+ EGEE R L C+H FHK C+E W H  Q   TCP+CR  + ++D
Subjt:  CSVCLSKVIEGEEARVLPCQHEFHKICVERWFHECQKQKTCPICRFWIRNED

AT1G72310.1 RING/U-box superfamily protein2.0e-0952.17Show/hide
Query:  CSVCLSKVIEGEEARVLP-CQHEFHKICVERWFHECQKQKTCPICR
        CS+CLS++++G++AR+LP C H FH  C++ WF   Q   TCPICR
Subjt:  CSVCLSKVIEGEEARVLP-CQHEFHKICVERWFHECQKQKTCPICR

AT3G51325.1 RING/U-box superfamily protein3.4e-1442.31Show/hide
Query:  DAMERKWCSVCLSKVIEGEEARVLPCQHEFHKICVERWFHECQKQKTCPICRFWIRNEDGQTTEVLTEEMVIWFTSFH
        +  E + CSVCL ++   +  + LPC HEFH +CV+ WF+  +K   CP+CRF        TT +LT+E+++WF+SFH
Subjt:  DAMERKWCSVCLSKVIEGEEARVLPCQHEFHKICVERWFHECQKQKTCPICRFWIRNEDGQTTEVLTEEMVIWFTSFH

AT3G55530.1 RING/U-box superfamily protein2.6e-0943.94Show/hide
Query:  AHPTLDDAMERK-------WCSVCLSKVIEGEEARVLPCQHEFHKICVERWFHECQKQKTCPICRF
        A   LD A E K        CSVCL +V  GE  R LPC H+FH  C++ W    ++Q TCP+C+F
Subjt:  AHPTLDDAMERK-------WCSVCLSKVIEGEEARVLPCQHEFHKICVERWFHECQKQKTCPICRF

AT4G35905.1 unknown protein7.6e-2266.67Show/hide
Query:  MVRISKALLKAAASSGVIKTLPDNLVCPLSKQPLRYCEASNSLISDTIGVSFPIKGGIPCLVPKDGRIIETD-DALKA
        MVR+++ LLK A +  + KTL + LVCPLSKQPLR+CE + SL+SDTIGVSFPIK GIPCLVPKDG+I+E + DA KA
Subjt:  MVRISKALLKAAASSGVIKTLPDNLVCPLSKQPLRYCEASNSLISDTIGVSFPIKGGIPCLVPKDGRIIETD-DALKA


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGGTGAGAATAAGCAAAGCGCTACTGAAAGCAGCGGCCTCCTCTGGTGTGATCAAGACCCTCCCCGATAACCTGGTCTGCCCGCTCTCTAAACAACCTCTAAGGTATTG
CGAGGCATCCAATTCTCTCATTAGCGACACCATTGGTGTTTCTTTCCCTATAAAGGGCGGAATTCCTTGCTTGGTGCCAAAGGATGGTAGGATAATTGAAACTGATGATG
CATTGAAAGCACATCCAACCTTAGATGATGCTATGGAGAGGAAGTGGTGTTCTGTGTGTTTGTCGAAAGTAATCGAGGGAGAGGAAGCTCGAGTTCTTCCTTGCCAACAC
GAGTTTCACAAGATATGCGTCGAGAGGTGGTTCCATGAATGTCAGAAACAGAAAACTTGTCCAATTTGTCGGTTCTGGATTAGAAATGAAGATGGTCAAACAACAGAAGT
GCTTACAGAAGAGATGGTAATATGGTTCACTTCTTTTCATATGATTGGTTACTAA
mRNA sequenceShow/hide mRNA sequence
ATGGTGAGAATAAGCAAAGCGCTACTGAAAGCAGCGGCCTCCTCTGGTGTGATCAAGACCCTCCCCGATAACCTGGTCTGCCCGCTCTCTAAACAACCTCTAAGGTATTG
CGAGGCATCCAATTCTCTCATTAGCGACACCATTGGTGTTTCTTTCCCTATAAAGGGCGGAATTCCTTGCTTGGTGCCAAAGGATGGTAGGATAATTGAAACTGATGATG
CATTGAAAGCACATCCAACCTTAGATGATGCTATGGAGAGGAAGTGGTGTTCTGTGTGTTTGTCGAAAGTAATCGAGGGAGAGGAAGCTCGAGTTCTTCCTTGCCAACAC
GAGTTTCACAAGATATGCGTCGAGAGGTGGTTCCATGAATGTCAGAAACAGAAAACTTGTCCAATTTGTCGGTTCTGGATTAGAAATGAAGATGGTCAAACAACAGAAGT
GCTTACAGAAGAGATGGTAATATGGTTCACTTCTTTTCATATGATTGGTTACTAA
Protein sequenceShow/hide protein sequence
MVRISKALLKAAASSGVIKTLPDNLVCPLSKQPLRYCEASNSLISDTIGVSFPIKGGIPCLVPKDGRIIETDDALKAHPTLDDAMERKWCSVCLSKVIEGEEARVLPCQH
EFHKICVERWFHECQKQKTCPICRFWIRNEDGQTTEVLTEEMVIWFTSFHMIGY