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Sed0012176 (gene) of Chayote v1 genome

Gene IDSed0012176
OrganismSechium edule (Chayote v1)
DescriptionNuclear transcription factor Y subunit C
Genome locationLG04:734991..735413
RNA-Seq ExpressionSed0012176
SyntenySed0012176
Gene Ontology termsGO:0006355 - regulation of transcription, DNA-templated (biological process)
GO:0005634 - nucleus (cellular component)
GO:0046982 - protein heterodimerization activity (molecular function)
InterPro domainsIPR003958 - Transcription factor CBF/NF-Y/archaeal histone domain
IPR009072 - Histone-fold


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAA0064731.1 dr1-associated corepressor [Cucumis melo var. makuwa]7.9e-5482.14Show/hide
Query:  MAEEEPGEAFRPAFPTGRVKKIMKIDKEIGKVNAEALFLVSCAAEVFLNLLAEKSAVVAVEKKRKTVKLEHIRIAVKRHRPIGDFLLDSLPLPSPPSDPP
        M EEE GEA RP FPTGRVKKIMK+DK+IGKVN+EALF+VSCA E+FL LLAEKSA VA EKKRKTVKLEHIR+AVKRHR I DFLLDSLPLPS PSD P
Subjt:  MAEEEPGEAFRPAFPTGRVKKIMKIDKEIGKVNAEALFLVSCAAEVFLNLLAEKSAVVAVEKKRKTVKLEHIRIAVKRHRPIGDFLLDSLPLPSPPSDPP

Query:  AKDENRARSAVDKPVPEGTRRIDDFFRRPGKTTSAETNES
        AKDENR R+ VDK  P GTRRIDDFFRRP KTTSAETNES
Subjt:  AKDENRARSAVDKPVPEGTRRIDDFFRRPGKTTSAETNES

XP_008445504.1 PREDICTED: dr1-associated corepressor [Cucumis melo]3.9e-5382.14Show/hide
Query:  MAEEEPGEAFRPAFPTGRVKKIMKIDKEIGKVNAEALFLVSCAAEVFLNLLAEKSAVVAVEKKRKTVKLEHIRIAVKRHRPIGDFLLDSLPLPSPPSDPP
        M EEE GEA RP FPTGRVKKIMK+DK+IGKVN+EALFLVSCA E+FL LLAEKSA VA EKKRKTVKLEHIR+AVKRHR I DFLLDSLPLPS PSD  
Subjt:  MAEEEPGEAFRPAFPTGRVKKIMKIDKEIGKVNAEALFLVSCAAEVFLNLLAEKSAVVAVEKKRKTVKLEHIRIAVKRHRPIGDFLLDSLPLPSPPSDPP

Query:  AKDENRARSAVDKPVPEGTRRIDDFFRRPGKTTSAETNES
        AKDENR R+ VDK  P GTRRIDDFFRRP KTTSAETNES
Subjt:  AKDENRARSAVDKPVPEGTRRIDDFFRRPGKTTSAETNES

XP_022962477.1 DNA polymerase epsilon subunit C [Cucurbita moschata]1.6e-5482.14Show/hide
Query:  MAEEEPGEAFRPAFPTGRVKKIMKIDKEIGKVNAEALFLVSCAAEVFLNLLAEKSAVVAVEKKRKTVKLEHIRIAVKRHRPIGDFLLDSLPLPSPPSDPP
        MAEEEPGEA RP FP GR+KKIMK+DK+IGKVN+EALFLVSCA E+FL LLAEKS+ VA EKKRKTVKLEHIRIAVKRH+ IGDFLLDSLPLPS PSD P
Subjt:  MAEEEPGEAFRPAFPTGRVKKIMKIDKEIGKVNAEALFLVSCAAEVFLNLLAEKSAVVAVEKKRKTVKLEHIRIAVKRHRPIGDFLLDSLPLPSPPSDPP

Query:  AKDENRARSAVDKPVPEGTRRIDDFFRRPGKTTSAETNES
        AKDENR R  VDK  PEGTRRIDDFFRRP KT SAETNE+
Subjt:  AKDENRARSAVDKPVPEGTRRIDDFFRRPGKTTSAETNES

XP_022997291.1 DNA polymerase epsilon subunit C [Cucurbita maxima]3.6e-5482.14Show/hide
Query:  MAEEEPGEAFRPAFPTGRVKKIMKIDKEIGKVNAEALFLVSCAAEVFLNLLAEKSAVVAVEKKRKTVKLEHIRIAVKRHRPIGDFLLDSLPLPSPPSDPP
        MAEEEPGEA RP FP GR+KKIMK+DK+IGKVN+EALFLVSCA E+FL LLAEKSA VA EKKRKTVKLEHIRIAVKRH+ I DFLLDSLPLPS PSD P
Subjt:  MAEEEPGEAFRPAFPTGRVKKIMKIDKEIGKVNAEALFLVSCAAEVFLNLLAEKSAVVAVEKKRKTVKLEHIRIAVKRHRPIGDFLLDSLPLPSPPSDPP

Query:  AKDENRARSAVDKPVPEGTRRIDDFFRRPGKTTSAETNES
        AKDENR R  VDK  PEGTRRIDDFFRRP KT SAETNE+
Subjt:  AKDENRARSAVDKPVPEGTRRIDDFFRRPGKTTSAETNES

XP_038884228.1 NCT transcriptional regulatory complex subunit A [Benincasa hispida]4.6e-5482.86Show/hide
Query:  MAEEEPGEAFRPAFPTGRVKKIMKIDKEIGKVNAEALFLVSCAAEVFLNLLAEKSAVVAVEKKRKTVKLEHIRIAVKRHRPIGDFLLDSLPLPSPPSDPP
        MAEEE G+A RP FPTGRVKKIMK+DK+I KVN+EALFLVSCA E+FL LLAEKSA VA EKKRKTVKLEHIRIAVKRHR I DFLLDSLPLP  PSD P
Subjt:  MAEEEPGEAFRPAFPTGRVKKIMKIDKEIGKVNAEALFLVSCAAEVFLNLLAEKSAVVAVEKKRKTVKLEHIRIAVKRHRPIGDFLLDSLPLPSPPSDPP

Query:  AKDENRARSAVDKPVPEGTRRIDDFFRRPGKTTSAETNES
        AKDENR R+ VDK VPEGTRRIDDFFRRP KTTSAE NES
Subjt:  AKDENRARSAVDKPVPEGTRRIDDFFRRPGKTTSAETNES

TrEMBL top hitse value%identityAlignment
A0A1S3BDL4 dr1-associated corepressor1.9e-5382.14Show/hide
Query:  MAEEEPGEAFRPAFPTGRVKKIMKIDKEIGKVNAEALFLVSCAAEVFLNLLAEKSAVVAVEKKRKTVKLEHIRIAVKRHRPIGDFLLDSLPLPSPPSDPP
        M EEE GEA RP FPTGRVKKIMK+DK+IGKVN+EALFLVSCA E+FL LLAEKSA VA EKKRKTVKLEHIR+AVKRHR I DFLLDSLPLPS PSD  
Subjt:  MAEEEPGEAFRPAFPTGRVKKIMKIDKEIGKVNAEALFLVSCAAEVFLNLLAEKSAVVAVEKKRKTVKLEHIRIAVKRHRPIGDFLLDSLPLPSPPSDPP

Query:  AKDENRARSAVDKPVPEGTRRIDDFFRRPGKTTSAETNES
        AKDENR R+ VDK  P GTRRIDDFFRRP KTTSAETNES
Subjt:  AKDENRARSAVDKPVPEGTRRIDDFFRRPGKTTSAETNES

A0A5A7VG98 Dr1-associated corepressor3.8e-5482.14Show/hide
Query:  MAEEEPGEAFRPAFPTGRVKKIMKIDKEIGKVNAEALFLVSCAAEVFLNLLAEKSAVVAVEKKRKTVKLEHIRIAVKRHRPIGDFLLDSLPLPSPPSDPP
        M EEE GEA RP FPTGRVKKIMK+DK+IGKVN+EALF+VSCA E+FL LLAEKSA VA EKKRKTVKLEHIR+AVKRHR I DFLLDSLPLPS PSD P
Subjt:  MAEEEPGEAFRPAFPTGRVKKIMKIDKEIGKVNAEALFLVSCAAEVFLNLLAEKSAVVAVEKKRKTVKLEHIRIAVKRHRPIGDFLLDSLPLPSPPSDPP

Query:  AKDENRARSAVDKPVPEGTRRIDDFFRRPGKTTSAETNES
        AKDENR R+ VDK  P GTRRIDDFFRRP KTTSAETNES
Subjt:  AKDENRARSAVDKPVPEGTRRIDDFFRRPGKTTSAETNES

A0A6J1BRI3 nuclear transcription factor Y subunit C-11.6e-5279.29Show/hide
Query:  MAEEEPGEAFRPAFPTGRVKKIMKIDKEIGKVNAEALFLVSCAAEVFLNLLAEKSAVVAVEKKRKTVKLEHIRIAVKRHRPIGDFLLDSLPLPSPPSDPP
        MAEEE GEA RP  PTGRVKKIMK+DK++ KVN+EALFLVSCA ++FL LLAEKSA VA EKKRKTVKLEHIRIAVKRHRPI DFLLDSLPLP  PSD P
Subjt:  MAEEEPGEAFRPAFPTGRVKKIMKIDKEIGKVNAEALFLVSCAAEVFLNLLAEKSAVVAVEKKRKTVKLEHIRIAVKRHRPIGDFLLDSLPLPSPPSDPP

Query:  AKDENRARSAVDKPVPEGTRRIDDFFRRPGKTTSAETNES
        AK+ENR R+A DK  PEGTRRIDDFFR+P KTTS E NES
Subjt:  AKDENRARSAVDKPVPEGTRRIDDFFRRPGKTTSAETNES

A0A6J1HCT3 DNA polymerase epsilon subunit C7.7e-5582.14Show/hide
Query:  MAEEEPGEAFRPAFPTGRVKKIMKIDKEIGKVNAEALFLVSCAAEVFLNLLAEKSAVVAVEKKRKTVKLEHIRIAVKRHRPIGDFLLDSLPLPSPPSDPP
        MAEEEPGEA RP FP GR+KKIMK+DK+IGKVN+EALFLVSCA E+FL LLAEKS+ VA EKKRKTVKLEHIRIAVKRH+ IGDFLLDSLPLPS PSD P
Subjt:  MAEEEPGEAFRPAFPTGRVKKIMKIDKEIGKVNAEALFLVSCAAEVFLNLLAEKSAVVAVEKKRKTVKLEHIRIAVKRHRPIGDFLLDSLPLPSPPSDPP

Query:  AKDENRARSAVDKPVPEGTRRIDDFFRRPGKTTSAETNES
        AKDENR R  VDK  PEGTRRIDDFFRRP KT SAETNE+
Subjt:  AKDENRARSAVDKPVPEGTRRIDDFFRRPGKTTSAETNES

A0A6J1K737 DNA polymerase epsilon subunit C1.7e-5482.14Show/hide
Query:  MAEEEPGEAFRPAFPTGRVKKIMKIDKEIGKVNAEALFLVSCAAEVFLNLLAEKSAVVAVEKKRKTVKLEHIRIAVKRHRPIGDFLLDSLPLPSPPSDPP
        MAEEEPGEA RP FP GR+KKIMK+DK+IGKVN+EALFLVSCA E+FL LLAEKSA VA EKKRKTVKLEHIRIAVKRH+ I DFLLDSLPLPS PSD P
Subjt:  MAEEEPGEAFRPAFPTGRVKKIMKIDKEIGKVNAEALFLVSCAAEVFLNLLAEKSAVVAVEKKRKTVKLEHIRIAVKRHRPIGDFLLDSLPLPSPPSDPP

Query:  AKDENRARSAVDKPVPEGTRRIDDFFRRPGKTTSAETNES
        AKDENR R  VDK  PEGTRRIDDFFRRP KT SAETNE+
Subjt:  AKDENRARSAVDKPVPEGTRRIDDFFRRPGKTTSAETNES

SwissProt top hitse value%identityAlignment
A0JPP1 Dr1-associated corepressor8.3e-0636.71Show/hide
Query:  FRPAFPTGRVKKIMKIDKEIGKVNAEALFLVSCAAEVFLNLLAEKSAVVAVEKKRKTVKLEHIRIAVKRHRPIGDFLLD
        +   FP  R+KKIM+ D+EIGKV A    ++S A E+FL  L +K+  V   +  KT+   H++  ++  +   DFL D
Subjt:  FRPAFPTGRVKKIMKIDKEIGKVNAEALFLVSCAAEVFLNLLAEKSAVVAVEKKRKTVKLEHIRIAVKRHRPIGDFLLD

Q14919 Dr1-associated corepressor8.3e-0636.71Show/hide
Query:  FRPAFPTGRVKKIMKIDKEIGKVNAEALFLVSCAAEVFLNLLAEKSAVVAVEKKRKTVKLEHIRIAVKRHRPIGDFLLD
        +   FP  R+KKIM+ D+EIGKV A    ++S A E+FL  L +K+  V   +  KT+   H++  ++  +   DFL D
Subjt:  FRPAFPTGRVKKIMKIDKEIGKVNAEALFLVSCAAEVFLNLLAEKSAVVAVEKKRKTVKLEHIRIAVKRHRPIGDFLLD

Q2YDP3 Dr1-associated corepressor8.3e-0636.71Show/hide
Query:  FRPAFPTGRVKKIMKIDKEIGKVNAEALFLVSCAAEVFLNLLAEKSAVVAVEKKRKTVKLEHIRIAVKRHRPIGDFLLD
        +   FP  R+KKIM+ D+EIGKV A    ++S A E+FL  L +K+  V   +  KT+   H++  ++  +   DFL D
Subjt:  FRPAFPTGRVKKIMKIDKEIGKVNAEALFLVSCAAEVFLNLLAEKSAVVAVEKKRKTVKLEHIRIAVKRHRPIGDFLLD

Q9D6N5 Dr1-associated corepressor8.3e-0636.71Show/hide
Query:  FRPAFPTGRVKKIMKIDKEIGKVNAEALFLVSCAAEVFLNLLAEKSAVVAVEKKRKTVKLEHIRIAVKRHRPIGDFLLD
        +   FP  R+KKIM+ D+EIGKV A    ++S A E+FL  L +K+  V   +  KT+   H++  ++  +   DFL D
Subjt:  FRPAFPTGRVKKIMKIDKEIGKVNAEALFLVSCAAEVFLNLLAEKSAVVAVEKKRKTVKLEHIRIAVKRHRPIGDFLLD

Q9FMV5 Nuclear transcription factor Y subunit C-41.4e-0537.11Show/hide
Query:  PTGRVKKIMKIDKEIGKVNAEALFLVSCAAEVFLNLLAEKSAVVAVEKKRKTVKLEHIRIAVKRHRPIGDFLLDSLPLPSPPSDPPAKDENRARSAV
        P  R+KKIMK D+++  ++AEA  L + A E+F+  L  +S + A E KR+T++   I  A+ R   I DFL+D +P          K+E  A SA+
Subjt:  PTGRVKKIMKIDKEIGKVNAEALFLVSCAAEVFLNLLAEKSAVVAVEKKRKTVKLEHIRIAVKRHRPIGDFLLDSLPLPSPPSDPPAKDENRARSAV

Arabidopsis top hitse value%identityAlignment
AT3G12480.1 nuclear factor Y, subunit C111.0e-0636.99Show/hide
Query:  FPTGRVKKIMKIDKEIGKVNAEALFLVSCAAEVFLNLLAEKSAVVAVEKKRKTVKLEHIRIAVKRHRPIGDFL
        FP  R+KKIM+ D+++GK+      LVS + E+FL  L +++  + +E+  KTV   H++  V+R+  + DFL
Subjt:  FPTGRVKKIMKIDKEIGKVNAEALFLVSCAAEVFLNLLAEKSAVVAVEKKRKTVKLEHIRIAVKRHRPIGDFL

AT3G48590.1 nuclear factor Y, subunit C11.3e-0640.26Show/hide
Query:  PTGRVKKIMKIDKEIGKVNAEALFLVSCAAEVFLNLLAEKSAVVAVEKKRKTVKLEHIRIAVKRHRPIGDFLLDSLP
        P  R+KKIMK D+++  ++AEA  L + A E+F+  L  +S + A E KR+T++   I  A+ R   I DFL+D +P
Subjt:  PTGRVKKIMKIDKEIGKVNAEALFLVSCAAEVFLNLLAEKSAVVAVEKKRKTVKLEHIRIAVKRHRPIGDFLLDSLP

AT5G43250.1 nuclear factor Y, subunit C131.7e-3358.39Show/hide
Query:  EEEPGEAFRPAFPTGRVKKIMKIDKEIGKVNAEALFLVSCAAEVFLNLLAEKSAVVAVEKKRKTVKLEHIRIAVKRHRPIGDFLLDSLPLPSPPSDPPAK
        EEE G + RP FP GRVKKIMK+DK+I K+N+EAL +++ + E+FL+ LAEKSAVV  EKKRKTV L+H+RIAVKRH+P  DFLLDSLPLP+ P      
Subjt:  EEEPGEAFRPAFPTGRVKKIMKIDKEIGKVNAEALFLVSCAAEVFLNLLAEKSAVVAVEKKRKTVKLEHIRIAVKRHRPIGDFLLDSLPLPSPPSDPPAK

Query:  DENRARSAVDKPVPE---GTRRIDDFFRR-PGKTTSA
             +S  DK +P    GTRRIDDFF +   KT SA
Subjt:  DENRARSAVDKPVPE---GTRRIDDFFRR-PGKTTSA

AT5G63470.1 nuclear factor Y, subunit C41.0e-0637.11Show/hide
Query:  PTGRVKKIMKIDKEIGKVNAEALFLVSCAAEVFLNLLAEKSAVVAVEKKRKTVKLEHIRIAVKRHRPIGDFLLDSLPLPSPPSDPPAKDENRARSAV
        P  R+KKIMK D+++  ++AEA  L + A E+F+  L  +S + A E KR+T++   I  A+ R   I DFL+D +P          K+E  A SA+
Subjt:  PTGRVKKIMKIDKEIGKVNAEALFLVSCAAEVFLNLLAEKSAVVAVEKKRKTVKLEHIRIAVKRHRPIGDFLLDSLPLPSPPSDPPAKDENRARSAV

AT5G63470.2 nuclear factor Y, subunit C41.0e-0637.11Show/hide
Query:  PTGRVKKIMKIDKEIGKVNAEALFLVSCAAEVFLNLLAEKSAVVAVEKKRKTVKLEHIRIAVKRHRPIGDFLLDSLPLPSPPSDPPAKDENRARSAV
        P  R+KKIMK D+++  ++AEA  L + A E+F+  L  +S + A E KR+T++   I  A+ R   I DFL+D +P          K+E  A SA+
Subjt:  PTGRVKKIMKIDKEIGKVNAEALFLVSCAAEVFLNLLAEKSAVVAVEKKRKTVKLEHIRIAVKRHRPIGDFLLDSLPLPSPPSDPPAKDENRARSAV


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGGCGGAAGAGGAACCCGGCGAGGCTTTCCGGCCGGCATTTCCGACTGGACGAGTGAAGAAGATAATGAAGATCGACAAGGAAATTGGCAAAGTGAATGCAGAAGCACT
GTTCTTAGTCTCATGCGCCGCCGAGGTTTTCCTCAATCTTCTTGCTGAAAAGTCCGCAGTAGTCGCCGTTGAGAAGAAACGGAAGACCGTGAAGCTTGAACACATCCGAA
TCGCCGTTAAAAGGCACCGACCAATCGGCGATTTCCTCCTCGATTCGCTTCCTCTTCCATCTCCGCCGTCGGATCCGCCGGCGAAGGACGAGAATCGAGCTCGCTCTGCC
GTTGATAAACCGGTTCCTGAAGGAACCCGTCGAATCGATGATTTCTTTCGCCGGCCGGGAAAGACAACGTCGGCGGAGACTAATGAGTCGTAG
mRNA sequenceShow/hide mRNA sequence
ATGGCGGAAGAGGAACCCGGCGAGGCTTTCCGGCCGGCATTTCCGACTGGACGAGTGAAGAAGATAATGAAGATCGACAAGGAAATTGGCAAAGTGAATGCAGAAGCACT
GTTCTTAGTCTCATGCGCCGCCGAGGTTTTCCTCAATCTTCTTGCTGAAAAGTCCGCAGTAGTCGCCGTTGAGAAGAAACGGAAGACCGTGAAGCTTGAACACATCCGAA
TCGCCGTTAAAAGGCACCGACCAATCGGCGATTTCCTCCTCGATTCGCTTCCTCTTCCATCTCCGCCGTCGGATCCGCCGGCGAAGGACGAGAATCGAGCTCGCTCTGCC
GTTGATAAACCGGTTCCTGAAGGAACCCGTCGAATCGATGATTTCTTTCGCCGGCCGGGAAAGACAACGTCGGCGGAGACTAATGAGTCGTAG
Protein sequenceShow/hide protein sequence
MAEEEPGEAFRPAFPTGRVKKIMKIDKEIGKVNAEALFLVSCAAEVFLNLLAEKSAVVAVEKKRKTVKLEHIRIAVKRHRPIGDFLLDSLPLPSPPSDPPAKDENRARSA
VDKPVPEGTRRIDDFFRRPGKTTSAETNES