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Sed0012251 (gene) of Chayote v1 genome

Gene IDSed0012251
OrganismSechium edule (Chayote v1)
Descriptionprotein indeterminate-domain 16
Genome locationLG12:34571790..34573326
RNA-Seq ExpressionSed0012251
SyntenySed0012251
Gene Ontology termsGO:0009630 - gravitropism (biological process)
GO:0005634 - nucleus (cellular component)
InterPro domainsIPR039288 - Zinc finger protein SHOOT GRAVITROPISM 5-like


Homology Show/hide homology
GenBank top hitse value%identityAlignment
XP_004138047.1 protein indeterminate-domain 16 [Cucumis sativus]2.3e-5374.27Show/hide
Query:  MEDENQEELQLLPTRNSVASSSASHMTSRP---------------VVHPGSVDLQLSISLRPIRPV----GECLLKYEEVMKPE--RCVEALKWEAAEQI
        MEDE+Q+ELQLLPT +S+ASSS SH++SRP                   GSVDLQLSISLRPIRPV     ECL KYEEVMKPE   CV+ALKW+AAEQI
Subjt:  MEDENQEELQLLPTRNSVASSSASHMTSRP---------------VVHPGSVDLQLSISLRPIRPV----GECLLKYEEVMKPE--RCVEALKWEAAEQI

Query:  RVAAMEKAYAERVRELTKREIEMAQTEFARARQMWERARQEMEKAERMKERATRQIDSTCMEITCQSCKQR
        R+AAMEKAYAERVRELTKREIE+AQTEFARARQMWERAR+E+EKAERMKERATRQ+DSTCMEITCQSC+QR
Subjt:  RVAAMEKAYAERVRELTKREIEMAQTEFARARQMWERARQEMEKAERMKERATRQIDSTCMEITCQSCKQR

XP_008464429.1 PREDICTED: protein indeterminate-domain 16 [Cucumis melo]7.9e-5477.38Show/hide
Query:  MEDENQEELQLLPTRNSVASSSASHMTSRP-------------VVHPGSVDLQLSISLRPIRPV---GECLLKYEEVMKPE--RCVEALKWEAAEQIRVA
        MEDE+Q+ELQLLPT +S+ASSS SHM+SRP                 GSVDLQLSISLRPIRPV   GECL KYEEVMKPE   CVEALKW+AAEQIR+A
Subjt:  MEDENQEELQLLPTRNSVASSSASHMTSRP-------------VVHPGSVDLQLSISLRPIRPV---GECLLKYEEVMKPE--RCVEALKWEAAEQIRVA

Query:  AMEKAYAERVRELTKREIEMAQTEFARARQMWERARQEMEKAERMKERATRQIDSTCMEITCQSCKQR
        AMEKAYAERVRELTKREIE+AQTEFARARQMWERAR+E+EKAERMKERATRQ+DSTCMEITCQSC+QR
Subjt:  AMEKAYAERVRELTKREIEMAQTEFARARQMWERARQEMEKAERMKERATRQIDSTCMEITCQSCKQR

XP_022921773.1 protein indeterminate-domain 16-like [Cucurbita moschata]7.9e-5475.15Show/hide
Query:  MEDENQEELQLLPTRNSVA-SSSASHMTSRPVVH------------PGSVDLQLSISLRPIRPVGECLLKYEEVMKPE--RCVEALKWEAAEQIRVAAME
        MEDE+Q+ELQLLPT +++A SSS+SHM+SRP               PGS+DLQLSIS+RPIRP  EC+ KYEEVMKPE   CVEALKW+AAEQIR+AAME
Subjt:  MEDENQEELQLLPTRNSVA-SSSASHMTSRPVVH------------PGSVDLQLSISLRPIRPVGECLLKYEEVMKPE--RCVEALKWEAAEQIRVAAME

Query:  KAYAERVRELTKREIEMAQTEFARARQMWERARQEMEKAERMKERATRQIDSTCMEITCQSCKQR
        KAYAERVRELTKREIE+AQTEF RARQMWERAR+E+EKAERMKERATRQ+DSTCMEITCQSC+QR
Subjt:  KAYAERVRELTKREIEMAQTEFARARQMWERARQEMEKAERMKERATRQIDSTCMEITCQSCKQR

XP_023516632.1 protein indeterminate-domain 16-like isoform X1 [Cucurbita pepo subsp. pepo]7.9e-5475.15Show/hide
Query:  MEDENQEELQLLPTRNSVA-SSSASHMTSRPVVH------------PGSVDLQLSISLRPIRPVGECLLKYEEVMKPER--CVEALKWEAAEQIRVAAME
        MEDE+Q+ELQLLPT +++A SSS+SHM+SRP               PGS+DLQLSIS+RPIRP  EC+ KYEEVMKPE   CVEALKW+AAEQIR+AAME
Subjt:  MEDENQEELQLLPTRNSVA-SSSASHMTSRPVVH------------PGSVDLQLSISLRPIRPVGECLLKYEEVMKPER--CVEALKWEAAEQIRVAAME

Query:  KAYAERVRELTKREIEMAQTEFARARQMWERARQEMEKAERMKERATRQIDSTCMEITCQSCKQR
        KAYAERVRELTKREIE+AQTEF RARQMWERAR+E+EKAERMKERATRQ+DSTCMEITCQSC+QR
Subjt:  KAYAERVRELTKREIEMAQTEFARARQMWERARQEMEKAERMKERATRQIDSTCMEITCQSCKQR

XP_038878928.1 protein indeterminate-domain 16 [Benincasa hispida]1.4e-5578.18Show/hide
Query:  MEDENQEELQLLPTRNSVASSSASHMTSRP-------------VVHPGSVDLQLSISLRPIRPVGECLLKYEEVMKPE--RCVEALKWEAAEQIRVAAME
        MEDE+Q+ELQLLPT +S+ASSS SHM+SRP                PGSVDLQLSISLRPIRP  ECL KYEEVMKPE   CVEALKW+AAEQIR+AAME
Subjt:  MEDENQEELQLLPTRNSVASSSASHMTSRP-------------VVHPGSVDLQLSISLRPIRPVGECLLKYEEVMKPE--RCVEALKWEAAEQIRVAAME

Query:  KAYAERVRELTKREIEMAQTEFARARQMWERARQEMEKAERMKERATRQIDSTCMEITCQSCKQR
        KAYAERVRELTKREIE+AQTEFARARQMWERAR+E+EKAERMKERATRQ+DSTCMEITCQSC+QR
Subjt:  KAYAERVRELTKREIEMAQTEFARARQMWERARQEMEKAERMKERATRQIDSTCMEITCQSCKQR

TrEMBL top hitse value%identityAlignment
A0A0A0LRS8 Uncharacterized protein1.1e-5374.27Show/hide
Query:  MEDENQEELQLLPTRNSVASSSASHMTSRP---------------VVHPGSVDLQLSISLRPIRPV----GECLLKYEEVMKPE--RCVEALKWEAAEQI
        MEDE+Q+ELQLLPT +S+ASSS SH++SRP                   GSVDLQLSISLRPIRPV     ECL KYEEVMKPE   CV+ALKW+AAEQI
Subjt:  MEDENQEELQLLPTRNSVASSSASHMTSRP---------------VVHPGSVDLQLSISLRPIRPV----GECLLKYEEVMKPE--RCVEALKWEAAEQI

Query:  RVAAMEKAYAERVRELTKREIEMAQTEFARARQMWERARQEMEKAERMKERATRQIDSTCMEITCQSCKQR
        R+AAMEKAYAERVRELTKREIE+AQTEFARARQMWERAR+E+EKAERMKERATRQ+DSTCMEITCQSC+QR
Subjt:  RVAAMEKAYAERVRELTKREIEMAQTEFARARQMWERARQEMEKAERMKERATRQIDSTCMEITCQSCKQR

A0A1S3CN02 protein indeterminate-domain 163.8e-5477.38Show/hide
Query:  MEDENQEELQLLPTRNSVASSSASHMTSRP-------------VVHPGSVDLQLSISLRPIRPV---GECLLKYEEVMKPE--RCVEALKWEAAEQIRVA
        MEDE+Q+ELQLLPT +S+ASSS SHM+SRP                 GSVDLQLSISLRPIRPV   GECL KYEEVMKPE   CVEALKW+AAEQIR+A
Subjt:  MEDENQEELQLLPTRNSVASSSASHMTSRP-------------VVHPGSVDLQLSISLRPIRPV---GECLLKYEEVMKPE--RCVEALKWEAAEQIRVA

Query:  AMEKAYAERVRELTKREIEMAQTEFARARQMWERARQEMEKAERMKERATRQIDSTCMEITCQSCKQR
        AMEKAYAERVRELTKREIE+AQTEFARARQMWERAR+E+EKAERMKERATRQ+DSTCMEITCQSC+QR
Subjt:  AMEKAYAERVRELTKREIEMAQTEFARARQMWERARQEMEKAERMKERATRQIDSTCMEITCQSCKQR

A0A5A7UWD1 Protein indeterminate-domain 161.1e-5376.79Show/hide
Query:  MEDENQEELQLLPTRNSVASSSASHMTSRP-------------VVHPGSVDLQLSISLRPIRPV---GECLLKYEEVMKPE--RCVEALKWEAAEQIRVA
        MEDE+Q+ELQLLPT +S+ASSS SHM+SRP                 GSVDLQLSISLRPIRPV   GECL KYEEVMKPE   CVEALKW+AAEQIR+A
Subjt:  MEDENQEELQLLPTRNSVASSSASHMTSRP-------------VVHPGSVDLQLSISLRPIRPV---GECLLKYEEVMKPE--RCVEALKWEAAEQIRVA

Query:  AMEKAYAERVRELTKREIEMAQTEFARARQMWERARQEMEKAERMKERATRQIDSTCMEITCQSCKQR
        A+EKAYAERVRELTKREIE+AQTEFARARQMWERAR+E+EKAERMKERATRQ+DSTCMEITCQSC+QR
Subjt:  AMEKAYAERVRELTKREIEMAQTEFARARQMWERARQEMEKAERMKERATRQIDSTCMEITCQSCKQR

A0A5D3BFD1 Protein indeterminate-domain 163.8e-5477.38Show/hide
Query:  MEDENQEELQLLPTRNSVASSSASHMTSRP-------------VVHPGSVDLQLSISLRPIRPV---GECLLKYEEVMKPE--RCVEALKWEAAEQIRVA
        MEDE+Q+ELQLLPT +S+ASSS SHM+SRP                 GSVDLQLSISLRPIRPV   GECL KYEEVMKPE   CVEALKW+AAEQIR+A
Subjt:  MEDENQEELQLLPTRNSVASSSASHMTSRP-------------VVHPGSVDLQLSISLRPIRPV---GECLLKYEEVMKPE--RCVEALKWEAAEQIRVA

Query:  AMEKAYAERVRELTKREIEMAQTEFARARQMWERARQEMEKAERMKERATRQIDSTCMEITCQSCKQR
        AMEKAYAERVRELTKREIE+AQTEFARARQMWERAR+E+EKAERMKERATRQ+DSTCMEITCQSC+QR
Subjt:  AMEKAYAERVRELTKREIEMAQTEFARARQMWERARQEMEKAERMKERATRQIDSTCMEITCQSCKQR

A0A6J1E4S8 protein indeterminate-domain 16-like3.8e-5475.15Show/hide
Query:  MEDENQEELQLLPTRNSVA-SSSASHMTSRPVVH------------PGSVDLQLSISLRPIRPVGECLLKYEEVMKPE--RCVEALKWEAAEQIRVAAME
        MEDE+Q+ELQLLPT +++A SSS+SHM+SRP               PGS+DLQLSIS+RPIRP  EC+ KYEEVMKPE   CVEALKW+AAEQIR+AAME
Subjt:  MEDENQEELQLLPTRNSVA-SSSASHMTSRPVVH------------PGSVDLQLSISLRPIRPVGECLLKYEEVMKPE--RCVEALKWEAAEQIRVAAME

Query:  KAYAERVRELTKREIEMAQTEFARARQMWERARQEMEKAERMKERATRQIDSTCMEITCQSCKQR
        KAYAERVRELTKREIE+AQTEF RARQMWERAR+E+EKAERMKERATRQ+DSTCMEITCQSC+QR
Subjt:  KAYAERVRELTKREIEMAQTEFARARQMWERARQEMEKAERMKERATRQIDSTCMEITCQSCKQR

SwissProt top hitse value%identityAlignment
F4IPE3 Zinc finger protein SHOOT GRAVITROPISM 51.0e-0845.33Show/hide
Query:  AAEQI-RVAAMEKAYAERVRELTKREIEMAQTEFARARQMWERARQEMEKAERMKERATRQIDSTCMEITCQSCK
        A+EQI ++A  EKAYAE  +   KR+ E+A+ EFA A+++ ++A+ E+E+A+ +KE++ ++I ST M++TCQ+CK
Subjt:  AAEQI-RVAAMEKAYAERVRELTKREIEMAQTEFARARQMWERARQEMEKAERMKERATRQIDSTCMEITCQSCK

Q9C9X7 Protein indeterminate-domain 144.9e-0634.78Show/hide
Query:  LPTRNSVASSSASHMTSRPVVHPGSVDLQLSISLRPIRPVGECLLKYEEVMKPERCVEALKWEAAEQIRVAAMEKAYAERVRELTKREIEMAQTEFARAR
        L  R S  S         P V  GS++LQL  S          L       K    VE   +E  E     ++E+   E  R  TKR+IE+A+ EFA A+
Subjt:  LPTRNSVASSSASHMTSRPVVHPGSVDLQLSISLRPIRPVGECLLKYEEVMKPERCVEALKWEAAEQIRVAAMEKAYAERVRELTKREIEMAQTEFARAR

Query:  QMWERARQEMEKAERMKERATRQIDSTCMEITCQSCKQ
        ++ + AR E+ KA   +E A+R+I +T M+ITC +CKQ
Subjt:  QMWERARQEMEKAERMKERATRQIDSTCMEITCQSCKQ

Q9FRH4 Protein indeterminate-domain 164.4e-0736.84Show/hide
Query:  SVDLQLSISLRPIRPVGECLLKYEEVMKPERCVEALKWEAAEQIRVAAMEKAYAERVRELTKREIEMAQTEFARARQMWERARQEMEKAERMKERATRQI
        S++LQLSI +           K E  +  ER  E               E   AE  R+  KR+IEMA+ +F +A+++ E A+ E+EKA  ++E A ++I
Subjt:  SVDLQLSISLRPIRPVGECLLKYEEVMKPERCVEALKWEAAEQIRVAAMEKAYAERVRELTKREIEMAQTEFARARQMWERARQEMEKAERMKERATRQI

Query:  DSTCMEITCQSCKQ
        ++T MEITC SCKQ
Subjt:  DSTCMEITCQSCKQ

Arabidopsis top hitse value%identityAlignment
AT1G68130.1 indeterminate(ID)-domain 143.5e-0734.78Show/hide
Query:  LPTRNSVASSSASHMTSRPVVHPGSVDLQLSISLRPIRPVGECLLKYEEVMKPERCVEALKWEAAEQIRVAAMEKAYAERVRELTKREIEMAQTEFARAR
        L  R S  S         P V  GS++LQL  S          L       K    VE   +E  E     ++E+   E  R  TKR+IE+A+ EFA A+
Subjt:  LPTRNSVASSSASHMTSRPVVHPGSVDLQLSISLRPIRPVGECLLKYEEVMKPERCVEALKWEAAEQIRVAAMEKAYAERVRELTKREIEMAQTEFARAR

Query:  QMWERARQEMEKAERMKERATRQIDSTCMEITCQSCKQ
        ++ + AR E+ KA   +E A+R+I +T M+ITC +CKQ
Subjt:  QMWERARQEMEKAERMKERATRQIDSTCMEITCQSCKQ

AT2G01940.1 C2H2-like zinc finger protein7.4e-1045.33Show/hide
Query:  AAEQI-RVAAMEKAYAERVRELTKREIEMAQTEFARARQMWERARQEMEKAERMKERATRQIDSTCMEITCQSCK
        A+EQI ++A  EKAYAE  +   KR+ E+A+ EFA A+++ ++A+ E+E+A+ +KE++ ++I ST M++TCQ+CK
Subjt:  AAEQI-RVAAMEKAYAERVRELTKREIEMAQTEFARARQMWERARQEMEKAERMKERATRQIDSTCMEITCQSCK

AT2G01940.2 C2H2-like zinc finger protein7.4e-1045.33Show/hide
Query:  AAEQI-RVAAMEKAYAERVRELTKREIEMAQTEFARARQMWERARQEMEKAERMKERATRQIDSTCMEITCQSCK
        A+EQI ++A  EKAYAE  +   KR+ E+A+ EFA A+++ ++A+ E+E+A+ +KE++ ++I ST M++TCQ+CK
Subjt:  AAEQI-RVAAMEKAYAERVRELTKREIEMAQTEFARARQMWERARQEMEKAERMKERATRQIDSTCMEITCQSCK

AT2G01940.3 C2H2-like zinc finger protein7.4e-1045.33Show/hide
Query:  AAEQI-RVAAMEKAYAERVRELTKREIEMAQTEFARARQMWERARQEMEKAERMKERATRQIDSTCMEITCQSCK
        A+EQI ++A  EKAYAE  +   KR+ E+A+ EFA A+++ ++A+ E+E+A+ +KE++ ++I ST M++TCQ+CK
Subjt:  AAEQI-RVAAMEKAYAERVRELTKREIEMAQTEFARARQMWERARQEMEKAERMKERATRQIDSTCMEITCQSCK

AT3G48550.1 BEST Arabidopsis thaliana protein match is: C2H2-like zinc finger protein (TAIR:AT2G01940.3)1.7e-3051.83Show/hide
Query:  EDENQEELQLLPTRNSVASSSASHMTSRPVV---------HPGS------VDLQLSISLRPIRPVGECLLKYEEVMKPERCVEALKWEAAEQIRVAAMEK
        + ++ +ELQLLP+  S  S    H   RP V         H  S      +DL+LSISL  I    E          P   VEALKW+AAEQIR+AA+EK
Subjt:  EDENQEELQLLPTRNSVASSSASHMTSRPVV---------HPGS------VDLQLSISLRPIRPVGECLLKYEEVMKPERCVEALKWEAAEQIRVAAMEK

Query:  AYAERVRELTKREIEMAQTEFARARQMWERARQEMEKAERMKERATRQIDSTCMEITCQSCKQR
        AYAERVRELT+RE+EMAQ+EFARAR MW++AR+E+E+AER+KER+  +ID+ C+EITC SC+QR
Subjt:  AYAERVRELTKREIEMAQTEFARARQMWERARQEMEKAERMKERATRQIDSTCMEITCQSCKQR


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGGTCTGGTTGGGCTGTACTGAAAAACAAGAAAAACAATCTCCCTTTTTATTTGTTTCTTCAGAAATGGAAGACGAAAACCAGGAGGAGTTGCAGCTGCTTCCAACGCG
GAACTCCGTAGCGTCGTCCTCCGCATCCCACATGACGTCCCGTCCGGTGGTGCATCCAGGGTCGGTGGACCTGCAGTTGTCGATAAGCCTGAGGCCCATCCGGCCGGTGG
GGGAGTGTTTGTTGAAGTATGAGGAGGTGATGAAGCCGGAGAGGTGCGTGGAGGCGCTGAAGTGGGAGGCGGCGGAGCAGATTCGGGTGGCGGCGATGGAGAAGGCGTAC
GCGGAGCGGGTGAGGGAGCTTACGAAGAGGGAGATAGAAATGGCGCAAACGGAGTTCGCGAGGGCGAGGCAGATGTGGGAAAGGGCGAGACAAGAGATGGAAAAGGCTGA
GCGAATGAAAGAGAGAGCCACTCGCCAGATTGACTCTACGTGCATGGAGATCACTTGCCAATCTTGCAAGCAGAGATGCAAACAGTGGGATGCTATGGATTCATTTTGA
mRNA sequenceShow/hide mRNA sequence
ATGGTCTGGTTGGGCTGTACTGAAAAACAAGAAAAACAATCTCCCTTTTTATTTGTTTCTTCAGAAATGGAAGACGAAAACCAGGAGGAGTTGCAGCTGCTTCCAACGCG
GAACTCCGTAGCGTCGTCCTCCGCATCCCACATGACGTCCCGTCCGGTGGTGCATCCAGGGTCGGTGGACCTGCAGTTGTCGATAAGCCTGAGGCCCATCCGGCCGGTGG
GGGAGTGTTTGTTGAAGTATGAGGAGGTGATGAAGCCGGAGAGGTGCGTGGAGGCGCTGAAGTGGGAGGCGGCGGAGCAGATTCGGGTGGCGGCGATGGAGAAGGCGTAC
GCGGAGCGGGTGAGGGAGCTTACGAAGAGGGAGATAGAAATGGCGCAAACGGAGTTCGCGAGGGCGAGGCAGATGTGGGAAAGGGCGAGACAAGAGATGGAAAAGGCTGA
GCGAATGAAAGAGAGAGCCACTCGCCAGATTGACTCTACGTGCATGGAGATCACTTGCCAATCTTGCAAGCAGAGATGCAAACAGTGGGATGCTATGGATTCATTTTGA
Protein sequenceShow/hide protein sequence
MVWLGCTEKQEKQSPFLFVSSEMEDENQEELQLLPTRNSVASSSASHMTSRPVVHPGSVDLQLSISLRPIRPVGECLLKYEEVMKPERCVEALKWEAAEQIRVAAMEKAY
AERVRELTKREIEMAQTEFARARQMWERARQEMEKAERMKERATRQIDSTCMEITCQSCKQRCKQWDAMDSF