CuGenDBv2

Gene ID	Sed0012264
Organism	Sechium edule (Chayote v1)
Description	Ribosomal protein
Genome location	LG12:33652998..33656616
RNA-Seq Expression	Sed0012264
Synteny	Sed0012264
Gene Ontology terms	GO:0006412 - translation (biological process) GO:0005840 - ribosome (cellular component) GO:0003735 - structural constituent of ribosome (molecular function)
InterPro domains	IPR000473 - Ribosomal protein L36 IPR035977 - Ribosomal protein L36 superfamily

Homology

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GenBank top hits

e value

%identity

Alignment

KAG7021783.1 rpmJ [Cucurbita argyrosperma subsp. argyrosperma]

1.6e-37

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Query:  MKVRSSVKKMCEFCRTVKRKGRVYVLCSSNPKHKQRQGLSTLASEAPPPSLFSRSEVKQEILP--SSRIGLASLISQKHQPTMLFGWRMGLASILSRKQN
        MKVR+SVKKMCEFCRTV+R+GRVY+ CS+NPKHKQRQGLST ASEAP PSLFSRSEVKQEI P  SSR GLASLI QKH+PTMLFGWRMGLASIL +KQN
Subjt:  MKVRSSVKKMCEFCRTVKRKGRVYVLCSSNPKHKQRQGLSTLASEAPPPSLFSRSEVKQEILP--SSRIGLASLISQKHQPTMLFGWRMGLASILSRKQN

XP_008443993.2 PREDICTED: uncharacterized protein LOC103487446 [Cucumis melo]

3.1e-36

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Query:  MKVRSSVKKMCEFCRTVKRKGRVYVLCSSNPKHKQRQGLSTLASEAPPPSLFSRSEVKQEILPS--SRIGLASLISQKHQPTMLFGWRMGLASILSRKQN
        MKVRSSVKKMCEFCRTVKRKGRVY+ CSSNPKHKQRQGLST A E P PSLFSR+EVKQEILPS  SR+GLASLI QK++PTML GWRMGLASIL +K N
Subjt:  MKVRSSVKKMCEFCRTVKRKGRVYVLCSSNPKHKQRQGLSTLASEAPPPSLFSRSEVKQEILPS--SRIGLASLISQKHQPTMLFGWRMGLASILSRKQN

XP_022933442.1 uncharacterized protein LOC111440855 [Cucurbita moschata]

5.6e-38

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Query:  MKVRSSVKKMCEFCRTVKRKGRVYVLCSSNPKHKQRQGLSTLASEAPPPSLFSRSEVKQEILP--SSRIGLASLISQKHQPTMLFGWRMGLASILSRKQN
        MKVR+SVKKMCEFCRTV+R+GRVY+ CS+NPKHKQRQGLST ASEAP PSLFSRSEVKQEILP  SSR GLASLI QKH+PTMLFGWRMGLASIL +KQN
Subjt:  MKVRSSVKKMCEFCRTVKRKGRVYVLCSSNPKHKQRQGLSTLASEAPPPSLFSRSEVKQEILP--SSRIGLASLISQKHQPTMLFGWRMGLASILSRKQN

XP_022971996.1 uncharacterized protein LOC111470644 [Cucurbita maxima]

1.6e-37

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Query:  MKVRSSVKKMCEFCRTVKRKGRVYVLCSSNPKHKQRQGLSTLASEAPPPSLFSRSEVKQEILP--SSRIGLASLISQKHQPTMLFGWRMGLASILSRKQN
        MKVR+SVKKMCEFCRTV+R+GRVY+ CSSNPKHKQRQGLST ASEAP PSLFSRSEVK++ILP  SSR GLASLI QKH+PTMLFGWRMGLASIL +KQN
Subjt:  MKVRSSVKKMCEFCRTVKRKGRVYVLCSSNPKHKQRQGLSTLASEAPPPSLFSRSEVKQEILP--SSRIGLASLISQKHQPTMLFGWRMGLASILSRKQN

XP_038879717.1 uncharacterized protein LOC120071478 [Benincasa hispida]

5.6e-38

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Query:  MKVRSSVKKMCEFCRTVKRKGRVYVLCSSNPKHKQRQGLSTLASEAPPPSLFSRSEVKQEILP--SSRIGLASLISQKHQPTMLFGWRMGLASILSRKQN
        MKVR+SVKKMCEFCRTVKR+GRVYV CSSNPKHKQRQGLST ASE PPPSLFSRSEVKQE+LP  SSR GLASLI QKH+PTML GWRMGLASIL +K+N
Subjt:  MKVRSSVKKMCEFCRTVKRKGRVYVLCSSNPKHKQRQGLSTLASEAPPPSLFSRSEVKQEILP--SSRIGLASLISQKHQPTMLFGWRMGLASILSRKQN

TrEMBL top hits

e value

%identity

Alignment

A0A1S3B8W2 Ribosomal protein

1.5e-36

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Query:  MKVRSSVKKMCEFCRTVKRKGRVYVLCSSNPKHKQRQGLSTLASEAPPPSLFSRSEVKQEILPS--SRIGLASLISQKHQPTMLFGWRMGLASILSRKQN
        MKVRSSVKKMCEFCRTVKRKGRVY+ CSSNPKHKQRQGLST A E P PSLFSR+EVKQEILPS  SR+GLASLI QK++PTML GWRMGLASIL +K N
Subjt:  MKVRSSVKKMCEFCRTVKRKGRVYVLCSSNPKHKQRQGLSTLASEAPPPSLFSRSEVKQEILPS--SRIGLASLISQKHQPTMLFGWRMGLASILSRKQN

A0A5A7U4L3 Ribosomal protein

1.5e-36

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Query:  MKVRSSVKKMCEFCRTVKRKGRVYVLCSSNPKHKQRQGLSTLASEAPPPSLFSRSEVKQEILPS--SRIGLASLISQKHQPTMLFGWRMGLASILSRKQN
        MKVRSSVKKMCEFCRTVKRKGRVY+ CSSNPKHKQRQGLST A E P PSLFSR+EVKQEILPS  SR+GLASLI QK++PTML GWRMGLASIL +K N
Subjt:  MKVRSSVKKMCEFCRTVKRKGRVYVLCSSNPKHKQRQGLSTLASEAPPPSLFSRSEVKQEILPS--SRIGLASLISQKHQPTMLFGWRMGLASILSRKQN

A0A6J1CT08 Ribosomal protein

1.9e-36

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Query:  MKVRSSVKKMCEFCRTVKRKGRVYVLCSSNPKHKQRQGLSTLASEAPPPSLFSRSEVKQEILP--SSRIGLASLISQKHQPTMLFGWRMGLASILSRKQN
        MKVRSSVKKMCEFCRTVKR+GRVYV CSSNPKHKQRQGLST ASE P P LFSRSEVKQEILP  S R GLASLI QKH+PT +FGWRMGLASIL +K N
Subjt:  MKVRSSVKKMCEFCRTVKRKGRVYVLCSSNPKHKQRQGLSTLASEAPPPSLFSRSEVKQEILP--SSRIGLASLISQKHQPTMLFGWRMGLASILSRKQN

A0A6J1EZS5 Ribosomal protein

2.7e-38

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Query:  MKVRSSVKKMCEFCRTVKRKGRVYVLCSSNPKHKQRQGLSTLASEAPPPSLFSRSEVKQEILP--SSRIGLASLISQKHQPTMLFGWRMGLASILSRKQN
        MKVR+SVKKMCEFCRTV+R+GRVY+ CS+NPKHKQRQGLST ASEAP PSLFSRSEVKQEILP  SSR GLASLI QKH+PTMLFGWRMGLASIL +KQN
Subjt:  MKVRSSVKKMCEFCRTVKRKGRVYVLCSSNPKHKQRQGLSTLASEAPPPSLFSRSEVKQEILP--SSRIGLASLISQKHQPTMLFGWRMGLASILSRKQN

A0A6J1I4R0 Ribosomal protein

7.8e-38

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Query:  MKVRSSVKKMCEFCRTVKRKGRVYVLCSSNPKHKQRQGLSTLASEAPPPSLFSRSEVKQEILP--SSRIGLASLISQKHQPTMLFGWRMGLASILSRKQN
        MKVR+SVKKMCEFCRTV+R+GRVY+ CSSNPKHKQRQGLST ASEAP PSLFSRSEVK++ILP  SSR GLASLI QKH+PTMLFGWRMGLASIL +KQN
Subjt:  MKVRSSVKKMCEFCRTVKRKGRVYVLCSSNPKHKQRQGLSTLASEAPPPSLFSRSEVKQEILP--SSRIGLASLISQKHQPTMLFGWRMGLASILSRKQN

SwissProt top hits

e value

%identity

Alignment

A5VLI2 50S ribosomal protein L36

3.9e-10

78.95

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Query:  MKVRSSVKKMCEFCRTVKRKGRVYVLCSSNPKHKQRQG
        MKVR SVKKMCE C+ VKR GRV V+CS+NPKHKQRQG
Subjt:  MKVRSSVKKMCEFCRTVKRKGRVYVLCSSNPKHKQRQG

B2G8V5 50S ribosomal protein L36

3.9e-10

78.95

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Query:  MKVRSSVKKMCEFCRTVKRKGRVYVLCSSNPKHKQRQG
        MKVR SVKKMCE C+ VKR GRV V+CS+NPKHKQRQG
Subjt:  MKVRSSVKKMCEFCRTVKRKGRVYVLCSSNPKHKQRQG

B3WAJ5 50S ribosomal protein L36

2.3e-10

76.32

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Query:  MKVRSSVKKMCEFCRTVKRKGRVYVLCSSNPKHKQRQG
        MKVR SVKKMCE C+ V+RKGRV ++CS+NPKHKQRQG
Subjt:  MKVRSSVKKMCEFCRTVKRKGRVYVLCSSNPKHKQRQG

Q035A6 50S ribosomal protein L36

2.3e-10

76.32

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Query:  MKVRSSVKKMCEFCRTVKRKGRVYVLCSSNPKHKQRQG
        MKVR SVKKMCE C+ V+RKGRV ++CS+NPKHKQRQG
Subjt:  MKVRSSVKKMCEFCRTVKRKGRVYVLCSSNPKHKQRQG

Q03PY0 50S ribosomal protein L36

5.1e-10

76.32

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Query:  MKVRSSVKKMCEFCRTVKRKGRVYVLCSSNPKHKQRQG
        MKVR SVK MCE C+ +KRKGRV V+CS+NPKHKQRQG
Subjt:  MKVRSSVKKMCEFCRTVKRKGRVYVLCSSNPKHKQRQG

Arabidopsis top hits

e value

%identity

Alignment

AT5G20180.1 Ribosomal protein L36

1.8e-26

62.14

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Query:  MKVRSSVKKMCEFCRTVKRKGRVYVLCSSNPKHKQRQGLSTLASEAPPPS-LFSRSEVKQEI--LPSSRI--GLASLISQKHQPTMLFGWRMGLASILSR
        MKVRSSVKKMCEFC+TVKR+GRVYV+CSSNPKHKQRQG S+ A E   PS LF+     QE+  LP   +  GLASL+ ++  PT  FGWR GLASIL +
Subjt:  MKVRSSVKKMCEFCRTVKRKGRVYVLCSSNPKHKQRQGLSTLASEAPPPS-LFSRSEVKQEI--LPSSRI--GLASLISQKHQPTMLFGWRMGLASILSR

Query:  KQN
        + N
Subjt:  KQN

AT5G20180.2 Ribosomal protein L36

1.8e-26

62.14

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Query:  MKVRSSVKKMCEFCRTVKRKGRVYVLCSSNPKHKQRQGLSTLASEAPPPS-LFSRSEVKQEI--LPSSRI--GLASLISQKHQPTMLFGWRMGLASILSR
        MKVRSSVKKMCEFC+TVKR+GRVYV+CSSNPKHKQRQG S+ A E   PS LF+     QE+  LP   +  GLASL+ ++  PT  FGWR GLASIL +
Subjt:  MKVRSSVKKMCEFCRTVKRKGRVYVLCSSNPKHKQRQGLSTLASEAPPPS-LFSRSEVKQEI--LPSSRI--GLASLISQKHQPTMLFGWRMGLASILSR

Query:  KQN
        + N
Subjt:  KQN

ATCG00760.1 ribosomal protein L36

1.7e-08

63.16

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Query:  MKVRSSVKKMCEFCRTVKRKGRVYVLCSSNPKHKQRQG
        MK+R+SV+K+CE CR ++R+GR+ V+C SNP+HKQRQG
Subjt:  MKVRSSVKKMCEFCRTVKRKGRVYVLCSSNPKHKQRQG

Sequences

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CDS sequence

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ATGAAAGTTCGTTCTTCAGTGAAAAAGATGTGCGAGTTTTGTAGGACGGTGAAGCGTAAAGGTCGGGTATATGTATTATGCTCATCCAATCCCAAACACAAGCAACGCCA
AGGCCTATCAACACTTGCAAGTGAAGCTCCTCCTCCTTCCTTGTTCTCAAGAAGTGAGGTGAAGCAAGAGATTCTTCCCAGTTCGCGTATCGGTCTGGCTTCTCTCATCT
CCCAAAAGCATCAGCCAACAATGTTGTTTGGTTGGAGAATGGGCCTCGCTTCAATCCTGTCGAGGAAACAAAATTAG

mRNA sequence

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TAAAAAATGGGGAAAAAAGAAAAATGAAATTGAGGTGTGGTTTTTATATTTGTGTGAAAAGAGAATATATATATATATAGCTCAATTGCTGTGTGGTACTGTATTTTACG
TTCACCGCAACTCAGCCGGCCGCCGTCGCTCCCGATTCGAAGCCATGAAAGTTCGTTCTTCAGTGAAAAAGATGTGCGAGTTTTGTAGGACGGTGAAGCGTAAAGGTCGG
GTATATGTATTATGCTCATCCAATCCCAAACACAAGCAACGCCAAGGCCTATCAACACTTGCAAGTGAAGCTCCTCCTCCTTCCTTGTTCTCAAGAAGTGAGGTGAAGCA
AGAGATTCTTCCCAGTTCGCGTATCGGTCTGGCTTCTCTCATCTCCCAAAAGCATCAGCCAACAATGTTGTTTGGTTGGAGAATGGGCCTCGCTTCAATCCTGTCGAGGA
AACAAAATTAGCTTAGTAAACAAAAAGTACATCTGAACTCGACAATTATAAATGTCGCAATTTCGAGTGCCTTGGCAGCCCCTGCTACATTGATTTTTACTAGTTGTTTC
CTCTTTGACCTTGTTTCATGATACCATATTTTCAAACATGATGCTGTTATGTCTAAATAGAAATAAGCACACTGATGGTCTCTGTTTTTTTTGAGTTGGTCTTGATAATA
TTAGAATGGGGAAGAGATGGTGTTACATTGGAATCATTTTGTTTTGCTTATTGTTTACTTTATAGACTCCGGTTTAGTTAGGCCGGAGTTGAACCAGCAATAATTTTCAG
CTTCTGAAAATTGCCGGCAGAACTGTAAAATCTTCAGACCAGAGACAGCGACAGTAATCAGCTATCCAACCATTATGTTGGAGATTAGAAGTCAATTTTTCGTTCCTTAA
TTTCTTCTAAAGAATCCTCTTATCTTTTTTAATTTTTTTTTGAAACAATATCCTCTTATTTTCCACACTATGCCATGAATGAAGTTG

Protein sequence

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MKVRSSVKKMCEFCRTVKRKGRVYVLCSSNPKHKQRQGLSTLASEAPPPSLFSRSEVKQEILPSSRIGLASLISQKHQPTMLFGWRMGLASILSRKQN

Sed0012264 (gene) of Chayote v1 genome