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Sed0012336 (gene) of Chayote v1 genome

Gene IDSed0012336
OrganismSechium edule (Chayote v1)
Descriptionleucine-rich repeat extensin-like protein 3
Genome locationLG06:314381..316112
RNA-Seq ExpressionSed0012336
SyntenySed0012336
Gene Ontology termsGO:0016020 - membrane (cellular component)
InterPro domainsNA


Homology Show/hide homology
GenBank top hitse value%identityAlignment
XP_008463997.1 PREDICTED: leucine-rich repeat extensin-like protein 3 [Cucumis melo]2.8e-2666.28Show/hide
Query:  MERPLTTLIFVI-------LSLLNDSQAQNGANSSPSPPMKSPPPPS-SPPPPSPSPPPPPAPPPPSPPPPPPSPSPPPPTTSPPPPPRLRRRHSPPPPF
        MERPLTTLIFVI       LSLL +SQ  + AN + SPPM SPPPPS SPPPP   PPPPP PPPP    PPPSPSPPP + SPPPPP  R R SPPPP 
Subjt:  MERPLTTLIFVI-------LSLLNDSQAQNGANSSPSPPMKSPPPPS-SPPPPSPSPPPPPAPPPPSPPPPPPSPSPPPPTTSPPPPPRLRRRHSPPPPF

Query:  PASTEVNKKRPPVPRINNRNSNEGSKKSLNEGKKLGLLFAGIAALLQIFVVGFLVFKRWQLLRFKDQFDGFS
         +S E  KKRPPVP   N N+N+ SK+SLN+GKK+GL F GIAA+LQI VVGFLVFKR QLLR KD+++GFS
Subjt:  PASTEVNKKRPPVPRINNRNSNEGSKKSLNEGKKLGLLFAGIAALLQIFVVGFLVFKRWQLLRFKDQFDGFS

XP_011651738.2 LOW QUALITY PROTEIN: basic proline-rich protein [Cucumis sativus]2.2e-2665.12Show/hide
Query:  MERPLTTLIFVI-------LSLLNDSQAQNGANSSPSPPMKSPPPPSSPPPPSPSPPPPPAPPPPSP-PPPPPSPSPPPPTTSPPPPPRLRRRHSPPPPF
        MERPLTTLIFVI       LSLL +SQ  +GAN + SPP  S PPPS  PPP P PPPPP P PP P  PPPPSPSPPP +  PPPPP  R R +PPPP 
Subjt:  MERPLTTLIFVI-------LSLLNDSQAQNGANSSPSPPMKSPPPPSSPPPPSPSPPPPPAPPPPSP-PPPPPSPSPPPPTTSPPPPPRLRRRHSPPPPF

Query:  PASTEVNKKRPPVPRINNRNSNEGSKKSLNEGKKLGLLFAGIAALLQIFVVGFLVFKRWQLLRFKDQFDGFS
         +S E  KKRPPVP   N N+N+GSK+SLN+GKK+GL F GIAA+LQI VVGFLVFKR QLLR KD+++GFS
Subjt:  PASTEVNKKRPPVPRINNRNSNEGSKKSLNEGKKLGLLFAGIAALLQIFVVGFLVFKRWQLLRFKDQFDGFS

XP_022948467.1 leucine-rich repeat extensin-like protein 3 [Cucurbita moschata]1.8e-2562.03Show/hide
Query:  MERPLTTLIFV-------ILSLLNDSQAQNGANSSPSPPMKSPPPPSSPPPPSPSPPPPP--------APPPPSP-----PPPPPSPSPPPPTTSPPPP-
        MERP +TLIFV       ILSLL +SQA++GA  S SPP   PPPP SPPPPSP PPPPP        +PPPPSP     PPPPP+ S PPP   PPPP 
Subjt:  MERPLTTLIFV-------ILSLLNDSQAQNGANSSPSPPMKSPPPPSSPPPPSPSPPPPP--------APPPPSP-----PPPPPSPSPPPPTTSPPPP-

Query:  -PRLRRRHS-PPPPFPASTEVNKKRPPVPRINNRNSNEGSKKSLNEGKKLGLLFAGIAALLQIFVVGFLVFKRWQLLRFKDQFDGFS
         P L+ R + PPPP PAS++ NKK P V R NN ++ EGSK+SLN GKK+GL F GIAA+LQI VVGFLVFKR QLLRFKD++DGFS
Subjt:  -PRLRRRHS-PPPPFPASTEVNKKRPPVPRINNRNSNEGSKKSLNEGKKLGLLFAGIAALLQIFVVGFLVFKRWQLLRFKDQFDGFS

XP_023523257.1 leucine-rich repeat extensin-like protein 3 [Cucurbita pepo subsp. pepo]1.1e-2561.58Show/hide
Query:  MERPLTTLIFV-------ILSLLNDSQAQNGA--NSSPSPPMKSPPPPSSPPPPSPSPP--PPPAPPPPSP---PPPPPS--PSPPPPTTSPPPP-----
        MERP +TLIFV       ILSLL +SQA++GA  +SSP PP  SPPPPS PPPP P PP  PP +PPPPSP   PPPPP+  P PPP ++SPPPP     
Subjt:  MERPLTTLIFV-------ILSLLNDSQAQNGA--NSSPSPPMKSPPPPSSPPPPSPSPP--PPPAPPPPSP---PPPPPS--PSPPPPTTSPPPP-----

Query:  ---PRLRRRHSPP--PPFPASTEVNKKRPPVPRINNRNSNEGSKKSLNEGKKLGLLFAGIAALLQIFVVGFLVFKRWQLLRFKDQFDGFS
           P L+ R +PP  PP PAS++ NKK P V R NN ++ EGSK+SLN GKK+GL F GIAA+LQI VVGFLVFKR QLLRFKD++DGFS
Subjt:  ---PRLRRRHSPP--PPFPASTEVNKKRPPVPRINNRNSNEGSKKSLNEGKKLGLLFAGIAALLQIFVVGFLVFKRWQLLRFKDQFDGFS

XP_038900729.1 proline-rich receptor-like protein kinase PERK2 [Benincasa hispida]1.4e-2565.54Show/hide
Query:  MERPLTTLIFVI-------LSLLNDSQAQNGANSSPSPPMKSPPPPSSPPPP---SPSPPPPPAPPPP---SPPPPPPSPSPPPPTTSPPPPPRLRRRHS
        MERPLTTLIFVI       LSLL +SQ Q+GAN + SPP+ SPPPPS PPPP   SP PPPPP PPPP   SPPPPP SPSPPP +  PP P  L  R  
Subjt:  MERPLTTLIFVI-------LSLLNDSQAQNGANSSPSPPMKSPPPPSSPPPP---SPSPPPPPAPPPP---SPPPPPPSPSPPPPTTSPPPPPRLRRRHS

Query:  PPPPFPASTEVNKKRPPVPRINNRNSNEGSKKSLNEGKKLGLLFAGIAALLQIFVVGFLVFKRWQLLRFKDQFDGFS
         PPPF AS E  KK PPVP  N  N+N+GSK+SLN+GKK+GL F GIAA+LQI VVGFLVFKR QLLR KD+++GFS
Subjt:  PPPPFPASTEVNKKRPPVPRINNRNSNEGSKKSLNEGKKLGLLFAGIAALLQIFVVGFLVFKRWQLLRFKDQFDGFS

TrEMBL top hitse value%identityAlignment
A0A0A0LC75 Uncharacterized protein1.2e-2765.7Show/hide
Query:  MERPLTTLIFVI-------LSLLNDSQAQNGANSSPSPPMKSPPPPSSPPPPSPSPPPPPAPPPPSP-PPPPPSPSPPPPTTSPPPPPRLRRRHSPPPPF
        MERPLTTLIFVI       LSLL +SQ  +GAN + SPP  S PPPS  PPP P PPPPP PPPP P  PPPPSPSPPP +  PPPPP  R R +PPPP 
Subjt:  MERPLTTLIFVI-------LSLLNDSQAQNGANSSPSPPMKSPPPPSSPPPPSPSPPPPPAPPPPSP-PPPPPSPSPPPPTTSPPPPPRLRRRHSPPPPF

Query:  PASTEVNKKRPPVPRINNRNSNEGSKKSLNEGKKLGLLFAGIAALLQIFVVGFLVFKRWQLLRFKDQFDGFS
         +S E  KKRPPVP   N N+N+GSK+SLN+GKK+GL F GIAA+LQI VVGFLVFKR QLLR KD+++GFS
Subjt:  PASTEVNKKRPPVPRINNRNSNEGSKKSLNEGKKLGLLFAGIAALLQIFVVGFLVFKRWQLLRFKDQFDGFS

A0A1S3CKG6 leucine-rich repeat extensin-like protein 31.4e-2666.28Show/hide
Query:  MERPLTTLIFVI-------LSLLNDSQAQNGANSSPSPPMKSPPPPS-SPPPPSPSPPPPPAPPPPSPPPPPPSPSPPPPTTSPPPPPRLRRRHSPPPPF
        MERPLTTLIFVI       LSLL +SQ  + AN + SPPM SPPPPS SPPPP   PPPPP PPPP    PPPSPSPPP + SPPPPP  R R SPPPP 
Subjt:  MERPLTTLIFVI-------LSLLNDSQAQNGANSSPSPPMKSPPPPS-SPPPPSPSPPPPPAPPPPSPPPPPPSPSPPPPTTSPPPPPRLRRRHSPPPPF

Query:  PASTEVNKKRPPVPRINNRNSNEGSKKSLNEGKKLGLLFAGIAALLQIFVVGFLVFKRWQLLRFKDQFDGFS
         +S E  KKRPPVP   N N+N+ SK+SLN+GKK+GL F GIAA+LQI VVGFLVFKR QLLR KD+++GFS
Subjt:  PASTEVNKKRPPVPRINNRNSNEGSKKSLNEGKKLGLLFAGIAALLQIFVVGFLVFKRWQLLRFKDQFDGFS

A0A6J1G9A4 leucine-rich repeat extensin-like protein 38.8e-2662.03Show/hide
Query:  MERPLTTLIFV-------ILSLLNDSQAQNGANSSPSPPMKSPPPPSSPPPPSPSPPPPP--------APPPPSP-----PPPPPSPSPPPPTTSPPPP-
        MERP +TLIFV       ILSLL +SQA++GA  S SPP   PPPP SPPPPSP PPPPP        +PPPPSP     PPPPP+ S PPP   PPPP 
Subjt:  MERPLTTLIFV-------ILSLLNDSQAQNGANSSPSPPMKSPPPPSSPPPPSPSPPPPP--------APPPPSP-----PPPPPSPSPPPPTTSPPPP-

Query:  -PRLRRRHS-PPPPFPASTEVNKKRPPVPRINNRNSNEGSKKSLNEGKKLGLLFAGIAALLQIFVVGFLVFKRWQLLRFKDQFDGFS
         P L+ R + PPPP PAS++ NKK P V R NN ++ EGSK+SLN GKK+GL F GIAA+LQI VVGFLVFKR QLLRFKD++DGFS
Subjt:  -PRLRRRHS-PPPPFPASTEVNKKRPPVPRINNRNSNEGSKKSLNEGKKLGLLFAGIAALLQIFVVGFLVFKRWQLLRFKDQFDGFS

A0A6J1KAI1 leucine-rich repeat extensin-like protein 32.2e-2459.2Show/hide
Query:  MERPLTTLIFV-------ILSLLNDSQAQNGA--NSSPSPPMKSPPPPSSPPPPSP-------------SPP--PPPAPPPPS-----------PPPPPP
        MERPL+T IFV       ILSLL +SQA++GA  +SSP PP  SPPPPS PPPP P             SPP  PP +PPPPS           PPPPP 
Subjt:  MERPLTTLIFV-------ILSLLNDSQAQNGA--NSSPSPPMKSPPPPSSPPPPSP-------------SPP--PPPAPPPPS-----------PPPPPP

Query:  SPSPPPPTTSPPP-PPRLRRRHSP-PPPFPASTEVNKKRPPVPRINNRNSNEGSKKSLNEGKKLGLLFAGIAALLQIFVVGFLVFKRWQLLRFKDQFDGF
        SPS PPP   PPP PP L+ R +P PPP PAS++ NKK P V R NN ++ EGSK+SLN GKK+GL F GIAA+LQI VVGFLVFKR QLLRFKDQ+DGF
Subjt:  SPSPPPPTTSPPP-PPRLRRRHSP-PPPFPASTEVNKKRPPVPRINNRNSNEGSKKSLNEGKKLGLLFAGIAALLQIFVVGFLVFKRWQLLRFKDQFDGF

Query:  S
        S
Subjt:  S

B9GW18 Uncharacterized protein3.5e-1456.17Show/hide
Query:  LIFVILSLLNDSQAQNGANSSPSPPMKSP-PPPSSPPPPSPSPPPPPAPPPPSPPPPPPSPSPPPPTTSPPPPPRLRRRHSPPPPFPAST-EVNKKR---
        LIF   +LL +SQ+QNG    PSPP   P PPP  PPPPSP PPPPP PPPPSPPPPPP P PPPP+ SPPPPPR + +  PPPP   ST  V ++R   
Subjt:  LIFVILSLLNDSQAQNGANSSPSPPMKSP-PPPSSPPPPSPSPPPPPAPPPPSPPPPPPSPSPPPPTTSPPPPPRLRRRHSPPPPFPAST-EVNKKR---

Query:  PPVPRINNRNSNEGSKKSLNEGKKLGLLFAGIAALLQIFVVGFLVFKRWQLLRFKDQFDGFS
        PP P   ++N        +N GKK+GLLF GIAA+LQI VVGFL +KR QLL+  D+++  S
Subjt:  PPVPRINNRNSNEGSKKSLNEGKKLGLLFAGIAALLQIFVVGFLVFKRWQLLRFKDQFDGFS

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
AT1G54215.1 proline-rich family protein1.3e-0548.59Show/hide
Query:  SPSPPM--KSPPPPSSPPPPSPSPPPPPAPPPPS---------PPPPPPSPSPPPPTTSPPPPPRLRRRHSPPPPFPASTEVNKKRPPVPRINNRNSNEG
        S  PP+  +SPPPP  PPPP P PPPPP PPPP+         PPPPPP      P +SPPPP    R  S PPP P    + ++ PP PR   +   +G
Subjt:  SPSPPM--KSPPPPSSPPPPSPSPPPPPAPPPPS---------PPPPPPSPSPPPPTTSPPPPPRLRRRHSPPPPFPASTEVNKKRPPVPRINNRNSNEG

Query:  SKKSLNEGKKLGLLFAGIAALLQIFVVGFLVFKRWQLLRFKD
            LN+GK +GL+F G+ A+LQ+ VV FLVFKR QLL  KD
Subjt:  SKKSLNEGKKLGLLFAGIAALLQIFVVGFLVFKRWQLLRFKD


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGGAACGGCCATTGACTACATTGATCTTCGTGATTTTGTCGCTTCTCAATGATTCTCAGGCTCAAAATGGAGCCAATTCTTCTCCCTCACCTCCGATGAAGTCGCCGCC
TCCGCCTTCATCTCCGCCACCGCCATCTCCATCTCCACCACCGCCTCCAGCTCCCCCTCCGCCTTCACCTCCTCCACCGCCCCCATCTCCATCCCCACCTCCGCCCACAA
CTTCCCCACCGCCTCCTCCACGACTTCGCCGTCGTCATAGTCCTCCGCCGCCCTTCCCTGCATCCACCGAAGTGAATAAAAAGCGACCACCAGTGCCTCGGATTAACAAC
AGAAATAGTAATGAAGGGTCGAAGAAAAGTCTCAATGAGGGGAAGAAACTTGGGCTGCTCTTTGCAGGTATTGCCGCATTGCTTCAAATCTTTGTGGTGGGATTTTTGGT
ATTCAAGAGATGGCAGCTCCTAAGATTCAAGGACCAGTTTGATGGTTTTTCTTGA
mRNA sequenceShow/hide mRNA sequence
CTTGTATGAAAGAAACAGGTTGGAAAAATATTTGTGTAACCCAAAATCGATCAATCGCCCTAAAATAGCCAAACTGTTGAACTGCGCGCAAGCTCTCTCTTCCCCGTTTG
AACCCCTTTTTATTCCTTTGCCTCCTCTTATTTCTCCTTCGTTCTCACAAGGTGGGAACAACACAGAGAAGAAAAATTTCATTGATTCAATCCTCCACCACCGATTTCCC
CTTTCGATCCCACGTTTTGAGGACTCCCCAGATTCCAGGCCTTCCCAATGGCTCTCTGCAGATGATTTTCTCTTGTTCTTAATCTTTGTTTCTGCAGATTCTCATTTGGG
GGTCGTTTTTTTGTTCTAATGAATGTGGGCTTTGGGGTATATGGCTTGTAATTTGAATTGGGGTTGTTCTGATTTTGTGTGTCTCTAACCCTAGCCAGTTGAATCTGGCT
GTGAATCTTTGTGGGTGTTGATGAATTTTGGATTTGGAGGTCTGGAAGGGGGAATTTAGCGGTTGAGGTCGAACCCCTTTTGGCGAAACGAGAAGAAAATTGGGTGTTGT
TTTGAATTTGAGGAAATTTGGGTATAACCCAGATGCGAGGGAGGTCTGGGAATTTGAATTTGGATTCTGGGTTTGTTTGATTCACTGCTGTTCAATACTTCAATGCAATG
GAACGGCCATTGACTACATTGATCTTCGTGATTTTGTCGCTTCTCAATGATTCTCAGGCTCAAAATGGAGCCAATTCTTCTCCCTCACCTCCGATGAAGTCGCCGCCTCC
GCCTTCATCTCCGCCACCGCCATCTCCATCTCCACCACCGCCTCCAGCTCCCCCTCCGCCTTCACCTCCTCCACCGCCCCCATCTCCATCCCCACCTCCGCCCACAACTT
CCCCACCGCCTCCTCCACGACTTCGCCGTCGTCATAGTCCTCCGCCGCCCTTCCCTGCATCCACCGAAGTGAATAAAAAGCGACCACCAGTGCCTCGGATTAACAACAGA
AATAGTAATGAAGGGTCGAAGAAAAGTCTCAATGAGGGGAAGAAACTTGGGCTGCTCTTTGCAGGTATTGCCGCATTGCTTCAAATCTTTGTGGTGGGATTTTTGGTATT
CAAGAGATGGCAGCTCCTAAGATTCAAGGACCAGTTTGATGGTTTTTCTTGAATCAATTGGCATTTGTTTTCTTAGTCTTACAAGTTACAACAACAGATTCAAGGACTAT
AGAAGTATTCTTGAGGATATGCGGCCATTGAGCCAACTGAATTGAATCACTTTCTCAGAAAAAAAAGCCAACAATTGGGTTAGTTTTTGAGTCTTGGGGTTGGGAGGATG
CACAAAATTTATTGTTGAATTTATGAGAGGCTGCACAAAAGAGATGAAACAGAGCAGGCAGCTGGCTGAGAATGGGGGGCGAGCATCTTCTCTTAGGCTTTCCTCAGGTG
TTGTGTAAAAATGAGTACATTATATGATTGGTTGAGTTTTTCTTCTTGTGATTTTTGAATTCTTGTTCATTCTTTTATCCAATTCTGATCATACAGTCTATTAATTCAAA
GCAGAAGAAAATGTCTTGACTTGATATAGCCCATTTTGGTAGTTGAATTCTTTTTCTGCTAACCTTTGTTCCTCCTGGCTGTAAAAGTTTGTCTTTGTCTAATATCACAA
CTAATTATGCACTGAATCTCCACCATCTCCTTGCTTGTAGTTGCAGTTTTGTTTATTAGTGATAATACTGATTTTGGCAAAA
Protein sequenceShow/hide protein sequence
MERPLTTLIFVILSLLNDSQAQNGANSSPSPPMKSPPPPSSPPPPSPSPPPPPAPPPPSPPPPPPSPSPPPPTTSPPPPPRLRRRHSPPPPFPASTEVNKKRPPVPRINN
RNSNEGSKKSLNEGKKLGLLFAGIAALLQIFVVGFLVFKRWQLLRFKDQFDGFS