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Sed0012349 (gene) of Chayote v1 genome

Gene IDSed0012349
OrganismSechium edule (Chayote v1)
DescriptionRetrotransposon protein
Genome locationLG08:31984528..31985263
RNA-Seq ExpressionSed0012349
SyntenySed0012349
Gene Ontology termsGO:0016020 - membrane (cellular component)
InterPro domainsIPR024752 - Myb/SANT-like domain


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAA0038975.1 retrotransposon protein [Cucumis melo var. makuwa]8.0e-2158.24Show/hide
Query:  MAATGRNIRHSWTTMEDGTLVQSLIELVQEGGWRSDNGTFRNKYHNELLRLMHLKLPGCPITSTTVIDTRVKTLKRQYQAIAEMLGNTSCG
        M+ + R  RH WT  E+GTLV+ L+ELV  GGW+SDNGTFR  Y  +L+R+M  KLPGC + +TTVID R+KTLKR +QAIAEM G    G
Subjt:  MAATGRNIRHSWTTMEDGTLVQSLIELVQEGGWRSDNGTFRNKYHNELLRLMHLKLPGCPITSTTVIDTRVKTLKRQYQAIAEMLGNTSCG
KAA0042500.1 retrotransposon protein [Cucumis melo var. makuwa]2.1e-2158.24Show/hide
Query:  MAATGRNIRHSWTTMEDGTLVQSLIELVQEGGWRSDNGTFRNKYHNELLRLMHLKLPGCPITSTTVIDTRVKTLKRQYQAIAEMLGNTSCG
        M+ + R +RH WT  E+GTLV+ L+ELV  GGW+SDNGTFR  Y  +L+R+M  KLPGC + +TTVID R+KTLKR +QAIAEM G    G
Subjt:  MAATGRNIRHSWTTMEDGTLVQSLIELVQEGGWRSDNGTFRNKYHNELLRLMHLKLPGCPITSTTVIDTRVKTLKRQYQAIAEMLGNTSCG
KAA0046637.1 retrotransposon protein [Cucumis melo var. makuwa]8.0e-2158.24Show/hide
Query:  MAATGRNIRHSWTTMEDGTLVQSLIELVQEGGWRSDNGTFRNKYHNELLRLMHLKLPGCPITSTTVIDTRVKTLKRQYQAIAEMLGNTSCG
        M+ + R  RH WT  E+GTLV+ L+ELV  GGW+SDNGTFR  Y  +L+R+M  KLPGC + +TTVID R+KTLKR +QAIAEM G    G
Subjt:  MAATGRNIRHSWTTMEDGTLVQSLIELVQEGGWRSDNGTFRNKYHNELLRLMHLKLPGCPITSTTVIDTRVKTLKRQYQAIAEMLGNTSCG
KAA0064022.1 retrotransposon protein [Cucumis melo var. makuwa]6.1e-2158.24Show/hide
Query:  MAATGRNIRHSWTTMEDGTLVQSLIELVQEGGWRSDNGTFRNKYHNELLRLMHLKLPGCPITSTTVIDTRVKTLKRQYQAIAEMLGNTSCG
        M+ + R  RH WT  E+GTLV+ L+ELV  GGW+SDNGTFR  Y  +L+R+M  KLPGC + +TTVID R+KTLKR +QAIAEM G    G
Subjt:  MAATGRNIRHSWTTMEDGTLVQSLIELVQEGGWRSDNGTFRNKYHNELLRLMHLKLPGCPITSTTVIDTRVKTLKRQYQAIAEMLGNTSCG
KAA0066208.1 retrotransposon protein [Cucumis melo var. makuwa]6.1e-2158.24Show/hide
Query:  MAATGRNIRHSWTTMEDGTLVQSLIELVQEGGWRSDNGTFRNKYHNELLRLMHLKLPGCPITSTTVIDTRVKTLKRQYQAIAEMLGNTSCG
        M+ + R  RH WT  E+GTLV+ L+ELV  GGW+SDNGTFR  Y  +L+R+M  KLPGC + +TTVID R+KTLKR +QAIAEM G    G
Subjt:  MAATGRNIRHSWTTMEDGTLVQSLIELVQEGGWRSDNGTFRNKYHNELLRLMHLKLPGCPITSTTVIDTRVKTLKRQYQAIAEMLGNTSCG
TrEMBL top hitse value%identityAlignment
A0A5A7TGP1 Retrotransposon protein1.0e-2158.24Show/hide
Query:  MAATGRNIRHSWTTMEDGTLVQSLIELVQEGGWRSDNGTFRNKYHNELLRLMHLKLPGCPITSTTVIDTRVKTLKRQYQAIAEMLGNTSCG
        M+ + R +RH WT  E+GTLV+ L+ELV  GGW+SDNGTFR  Y  +L+R+M  KLPGC + +TTVID R+KTLKR +QAIAEM G    G
Subjt:  MAATGRNIRHSWTTMEDGTLVQSLIELVQEGGWRSDNGTFRNKYHNELLRLMHLKLPGCPITSTTVIDTRVKTLKRQYQAIAEMLGNTSCG
A0A5A7TRV1 Retrotransposon protein3.9e-2158.24Show/hide
Query:  MAATGRNIRHSWTTMEDGTLVQSLIELVQEGGWRSDNGTFRNKYHNELLRLMHLKLPGCPITSTTVIDTRVKTLKRQYQAIAEMLGNTSCG
        M+ + R  RH WT  E+GTLV+ L+ELV  GGW+SDNGTFR  Y  +L+R+M  KLPGC + +TTVID R+KTLKR +QAIAEM G    G
Subjt:  MAATGRNIRHSWTTMEDGTLVQSLIELVQEGGWRSDNGTFRNKYHNELLRLMHLKLPGCPITSTTVIDTRVKTLKRQYQAIAEMLGNTSCG
A0A5A7V6Q9 Retrotransposon protein3.0e-2158.24Show/hide
Query:  MAATGRNIRHSWTTMEDGTLVQSLIELVQEGGWRSDNGTFRNKYHNELLRLMHLKLPGCPITSTTVIDTRVKTLKRQYQAIAEMLGNTSCG
        M+ + R  RH WT  E+GTLV+ L+ELV  GGW+SDNGTFR  Y  +L+R+M  KLPGC + +TTVID R+KTLKR +QAIAEM G    G
Subjt:  MAATGRNIRHSWTTMEDGTLVQSLIELVQEGGWRSDNGTFRNKYHNELLRLMHLKLPGCPITSTTVIDTRVKTLKRQYQAIAEMLGNTSCG
A0A5A7VES2 Retrotransposon protein3.0e-2158.24Show/hide
Query:  MAATGRNIRHSWTTMEDGTLVQSLIELVQEGGWRSDNGTFRNKYHNELLRLMHLKLPGCPITSTTVIDTRVKTLKRQYQAIAEMLGNTSCG
        M+ + R  RH WT  E+GTLV+ L+ELV  GGW+SDNGTFR  Y  +L+R+M  KLPGC + +TTVID R+KTLKR +QAIAEM G    G
Subjt:  MAATGRNIRHSWTTMEDGTLVQSLIELVQEGGWRSDNGTFRNKYHNELLRLMHLKLPGCPITSTTVIDTRVKTLKRQYQAIAEMLGNTSCG
A0A5D3CWL2 Retrotransposon protein3.9e-2158.24Show/hide
Query:  MAATGRNIRHSWTTMEDGTLVQSLIELVQEGGWRSDNGTFRNKYHNELLRLMHLKLPGCPITSTTVIDTRVKTLKRQYQAIAEMLGNTSCG
        M+ + R  RH WT  E+GTLV+ L+ELV  GGW+SDNGTFR  Y  +L+R+M  KLPGC + +TTVID R+KTLKR +QAIAEM G    G
Subjt:  MAATGRNIRHSWTTMEDGTLVQSLIELVQEGGWRSDNGTFRNKYHNELLRLMHLKLPGCPITSTTVIDTRVKTLKRQYQAIAEMLGNTSCG
SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGGCTGCGACAGGGAGAAACATTCGACACAGTTGGACAACAATGGAAGATGGTACTTTAGTCCAATCACTAATCGAACTTGTACAAGAGGGGGGGTGGAGATCAGATAA
TGGTACTTTTAGGAATAAGTACCATAATGAACTACTTCGACTAATGCACCTAAAACTACCTGGATGCCCAATTACATCTACCACTGTGATTGATACTAGAGTGAAGACTC
TGAAACGACAATACCAAGCTATTGCAGAGATGCTGGGCAATACTTCATGCGGGTCAATATCTCAGTCTGCTAGAGATATTGCAGAAGAAGATTCAAATGCAGAGGTCGGT
GAGGGGGGCGGTTCCCAAGAATATTACATACCTGAGATTCCTGTTGCTGAAGAAGAAAACCCAAATACCCCCACAAGTAGAGTAGCTAGACCGTCATCCTCTTACGTGGA
GAGAAGAGAAAAAAAGGTCTCTCGAAGCGAGAAATGCTTGATGTGTTGCGTGCCGGCATGA
mRNA sequenceShow/hide mRNA sequence
ATGGCTGCGACAGGGAGAAACATTCGACACAGTTGGACAACAATGGAAGATGGTACTTTAGTCCAATCACTAATCGAACTTGTACAAGAGGGGGGGTGGAGATCAGATAA
TGGTACTTTTAGGAATAAGTACCATAATGAACTACTTCGACTAATGCACCTAAAACTACCTGGATGCCCAATTACATCTACCACTGTGATTGATACTAGAGTGAAGACTC
TGAAACGACAATACCAAGCTATTGCAGAGATGCTGGGCAATACTTCATGCGGGTCAATATCTCAGTCTGCTAGAGATATTGCAGAAGAAGATTCAAATGCAGAGGTCGGT
GAGGGGGGCGGTTCCCAAGAATATTACATACCTGAGATTCCTGTTGCTGAAGAAGAAAACCCAAATACCCCCACAAGTAGAGTAGCTAGACCGTCATCCTCTTACGTGGA
GAGAAGAGAAAAAAAGGTCTCTCGAAGCGAGAAATGCTTGATGTGTTGCGTGCCGGCATGA
Protein sequenceShow/hide protein sequence
MAATGRNIRHSWTTMEDGTLVQSLIELVQEGGWRSDNGTFRNKYHNELLRLMHLKLPGCPITSTTVIDTRVKTLKRQYQAIAEMLGNTSCGSISQSARDIAEEDSNAEVG
EGGGSQEYYIPEIPVAEEENPNTPTSRVARPSSSYVERREKKVSRSEKCLMCCVPA