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Sed0012365 (gene) of Chayote v1 genome

Gene IDSed0012365
OrganismSechium edule (Chayote v1)
DescriptionRetrovirus-related Pol polyprotein from transposon RE1
Genome locationLG01:18882822..18884854
RNA-Seq ExpressionSed0012365
SyntenySed0012365
Gene Ontology termsNA
InterPro domainsNA


Homology Show/hide homology
GenBank top hitse value%identityAlignment
XP_022154973.1 uncharacterized protein LOC111022117 [Momordica charantia]1.8e-1842.75Show/hide
Query:  MSFLIGLNDTFGSARSQILLMDPMRSVSKAFTLIVQEEHQHSMPLLPTPPSSLMLSVSQTSNSMKSQNSTTVGSSQSTRSRIDCSVCTHCGFVGHTIDRC
        M FL+GLN++F   R+QILLMDP  S+ KAF+LI QEE Q  +PL  TP  ++ L+V+Q+    +S +++  GS Q   S   C  CT+CG  GHT+D+C
Subjt:  MSFLIGLNDTFGSARSQILLMDPMRSVSKAFTLIVQEEHQHSMPLLPTPPSSLMLSVSQTSNSMKSQNSTTVGSSQSTRSRIDCSVCTHCGFVGHTIDRC

Query:  YKIHGCPPGFKSKNARDVTSTWHSSAAPSNVALATTPS
        Y++HG P G++SK  +      HSS      ++++T S
Subjt:  YKIHGCPPGFKSKNARDVTSTWHSSAAPSNVALATTPS

XP_030949946.1 uncharacterized protein LOC115973845 [Quercus lobata]1.8e-1847.37Show/hide
Query:  MSFLIGLNDTFGSARSQILLMDPMRSVSKAFTLIVQEEHQHSMPLLPTPPSSLMLSVSQTSNSMKSQNSTTVGSSQSTRSRIDCSVCTHCGFVGHTIDRC
        M FL+GLND+F   R+Q+LLMDP+ S+SK ++LI+QEE Q +            + V++ SN   S NS+  G         D  VCTHCG +GHT+D+C
Subjt:  MSFLIGLNDTFGSARSQILLMDPMRSVSKAFTLIVQEEHQHSMPLLPTPPSSLMLSVSQTSNSMKSQNSTTVGSSQSTRSRIDCSVCTHCGFVGHTIDRC

Query:  YKIHGCPPGFKSKN
        YK+HG PPGFK KN
Subjt:  YKIHGCPPGFKSKN

XP_030970454.1 uncharacterized protein LOC115990812 [Quercus lobata]2.0e-1742.19Show/hide
Query:  MSFLIGLNDTFGSARSQILLMDPMRSVSKAFTLIVQEEHQHSMPLLPTPPSSLMLSVSQTSNSMKSQNSTTVGSSQSTRSRIDCSVCTHCGFVGHTIDRC
        M F +G ND+F   R+Q LLMDP+ S+SK ++L++QE+ Q S+P          +  ++TSN     + T + S+ S     D  VCTHCG  GHT+D+C
Subjt:  MSFLIGLNDTFGSARSQILLMDPMRSVSKAFTLIVQEEHQHSMPLLPTPPSSLMLSVSQTSNSMKSQNSTTVGSSQSTRSRIDCSVCTHCGFVGHTIDRC

Query:  YKIHGCPPGFKSKNARDVTSTWHSSAAP
        YK+HG PPGFK KN   V     S   P
Subjt:  YKIHGCPPGFKSKNARDVTSTWHSSAAP

XP_034677823.1 uncharacterized protein LOC117908333 [Vitis riparia]9.1e-1844.92Show/hide
Query:  MSFLIGLNDTFGSARSQILLMDPMRSVSKAFTLIVQEEHQHSM-----PLLPTPPSSLMLSVSQTSNSMKSQNSTTVGSSQSTRSRIDCSVCTHCGFVGH
        M FL+GLN++F   R+QILLM+P   ++K F+L+VQEE Q S+     P    P SS   + S+ S+            S ++RSR D  +CTHC  +GH
Subjt:  MSFLIGLNDTFGSARSQILLMDPMRSVSKAFTLIVQEEHQHSM-----PLLPTPPSSLMLSVSQTSNSMKSQNSTTVGSSQSTRSRIDCSVCTHCGFVGH

Query:  TIDRCYKIHGCPPGFKSK
        T+DRCYKIHG PPGF+++
Subjt:  TIDRCYKIHGCPPGFKSK

XP_042976284.1 uncharacterized protein LOC122307457 [Carya illinoinensis]1.2e-1745.04Show/hide
Query:  MSFLIGLNDTFGSARSQILLMDPMRSVSKAFTLIVQEEHQHSMPLLPTPPSSLMLSVSQTSNSMKSQNSTTVGSSQSTRSRIDCSVCTHCGFVGHTIDRC
        M FL+GL+D+F S RSQILL+DP  S++K  +L++QEE Q  + L  + P SL    + T+  MK        +S+ T  R D  VC+HCG+ GHT ++C
Subjt:  MSFLIGLNDTFGSARSQILLMDPMRSVSKAFTLIVQEEHQHSMPLLPTPPSSLMLSVSQTSNSMKSQNSTTVGSSQSTRSRIDCSVCTHCGFVGHTIDRC

Query:  YKIHGCPPGFKSKNARDVTS-TWHSSAAPSN
        YKIHG PPGFKSK   + ++   +SS   SN
Subjt:  YKIHGCPPGFKSKNARDVTS-TWHSSAAPSN

TrEMBL top hitse value%identityAlignment
A0A2N9EYN0 Uncharacterized protein2.0e-1844.85Show/hide
Query:  MSFLIGLNDTFGSARSQILLMDPMRSVSKAFTLIVQEEHQHSMPLLPTPPSSLMLSVSQTSNSMKSQNSTTVGSSQSTRSRIDCSVCTHCGFVGHTIDRC
        M FL+GLN++F   R QILLMDPM  ++K F+LI QEE Q S+  L    SS    V  T+   KS+ + TVGS Q  + + +   CTHCG +GHTID+C
Subjt:  MSFLIGLNDTFGSARSQILLMDPMRSVSKAFTLIVQEEHQHSMPLLPTPPSSLMLSVSQTSNSMKSQNSTTVGSSQSTRSRIDCSVCTHCGFVGHTIDRC

Query:  YKIHGCPPGFKSK------NARDVTSTWHSSAAPSN
        YK+HG PPG+K++      N   +TS   ++ A +N
Subjt:  YKIHGCPPGFKSK------NARDVTSTWHSSAAPSN

A0A2N9IWI8 Uncharacterized protein9.8e-1844.12Show/hide
Query:  MSFLIGLNDTFGSARSQILLMDPMRSVSKAFTLIVQEEHQHSMPLLPTPPSSLMLSVSQTSNSMKSQNSTTVGSSQSTRSRIDCSVCTHCGFVGHTIDRC
        M FL+GLN++F   R QILLMDPM  ++K F+LI QEE Q S+  L    SS    V  T+   KS+ + TVGS Q  + + +   CTHCG +GHTID+C
Subjt:  MSFLIGLNDTFGSARSQILLMDPMRSVSKAFTLIVQEEHQHSMPLLPTPPSSLMLSVSQTSNSMKSQNSTTVGSSQSTRSRIDCSVCTHCGFVGHTIDRC

Query:  YKIHGCPPGFKSK------NARDVTSTWHSSAAPSN
        YK+HG PP +K++      N   +TS   ++ A +N
Subjt:  YKIHGCPPGFKSK------NARDVTSTWHSSAAPSN

A0A438BW82 Retrovirus-related Pol polyprotein from transposon TNT 1-941.3e-1744.07Show/hide
Query:  MSFLIGLNDTFGSARSQILLMDPMRSVSKAFTLIVQEEHQHSM-----PLLPTPPSSLMLSVSQTSNSMKSQNSTTVGSSQSTRSRIDCSVCTHCGFVGH
        M FL+GLN++F   R+QILLM+P   ++K F+L+VQEE Q S+     P    P SS   + S+ S+            + ++RSR D  +CTHC  +GH
Subjt:  MSFLIGLNDTFGSARSQILLMDPMRSVSKAFTLIVQEEHQHSM-----PLLPTPPSSLMLSVSQTSNSMKSQNSTTVGSSQSTRSRIDCSVCTHCGFVGH

Query:  TIDRCYKIHGCPPGFKSK
        T+DRCYKIHG PPGF+++
Subjt:  TIDRCYKIHGCPPGFKSK

A0A438I180 Retrovirus-related Pol polyprotein from transposon RE11.3e-1744.07Show/hide
Query:  MSFLIGLNDTFGSARSQILLMDPMRSVSKAFTLIVQEEHQHSM-----PLLPTPPSSLMLSVSQTSNSMKSQNSTTVGSSQSTRSRIDCSVCTHCGFVGH
        M FL+GLN++F   R+QILLM+P   ++K F+L+VQEE Q S+     P    P SS   + S+ S+            + ++RSR D  +CTHC  +GH
Subjt:  MSFLIGLNDTFGSARSQILLMDPMRSVSKAFTLIVQEEHQHSM-----PLLPTPPSSLMLSVSQTSNSMKSQNSTTVGSSQSTRSRIDCSVCTHCGFVGH

Query:  TIDRCYKIHGCPPGFKSK
        T+DRCYKIHG PPGF+++
Subjt:  TIDRCYKIHGCPPGFKSK

A0A6J1DLQ9 uncharacterized protein LOC1110221178.9e-1942.75Show/hide
Query:  MSFLIGLNDTFGSARSQILLMDPMRSVSKAFTLIVQEEHQHSMPLLPTPPSSLMLSVSQTSNSMKSQNSTTVGSSQSTRSRIDCSVCTHCGFVGHTIDRC
        M FL+GLN++F   R+QILLMDP  S+ KAF+LI QEE Q  +PL  TP  ++ L+V+Q+    +S +++  GS Q   S   C  CT+CG  GHT+D+C
Subjt:  MSFLIGLNDTFGSARSQILLMDPMRSVSKAFTLIVQEEHQHSMPLLPTPPSSLMLSVSQTSNSMKSQNSTTVGSSQSTRSRIDCSVCTHCGFVGHTIDRC

Query:  YKIHGCPPGFKSKNARDVTSTWHSSAAPSNVALATTPS
        Y++HG P G++SK  +      HSS      ++++T S
Subjt:  YKIHGCPPGFKSKNARDVTSTWHSSAAPSNVALATTPS

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGAGTTTCCTAATAGGGTTAAACGATACATTCGGATCGGCCAGATCTCAAATCCTATTAATGGATCCTATGCGATCGGTGAGTAAGGCATTCACCCTCATAGTTCAAGA
AGAGCATCAACACTCAATGCCTCTTCTTCCCACACCTCCTTCATCTCTGATGCTTTCCGTTTCTCAAACTTCAAACTCTATGAAGTCACAGAACTCTACCACTGTCGGGT
CTTCACAATCCACTCGATCACGCATAGATTGTTCAGTATGCACTCACTGTGGATTCGTTGGGCACACCATAGATCGTTGTTATAAAATCCATGGTTGCCCCCCTGGGTTC
AAGTCCAAGAATGCACGGGATGTGACTTCTACATGGCATTCCTCGGCTGCTCCTTCAAATGTGGCATTAGCCACAACACCCTCACGTTAA
mRNA sequenceShow/hide mRNA sequence
GTTAGTTTTACTGTTGTAACTTAAATATTCAAGTGTATTCCTTCTATAAATACACTCTTGGGATCATTAATAAAATTCATTTTATTCTTCCCAATATTTCTCTATTTCAA
AATGGTATCGGATGATTTTTTTCTCTCTCTTTTAAACGCGTTTTTTTCTTTTCCCATATTAGATGTCAAATTTTCTTGCGTTTTTTTCCATCTCTTCTTCTTCTTCTCCA
AAATTAGGGTTCAGCTTCTTCAATCGATCCTCCATGGGCACCACCGAATTTGCTCCGCTTCAACCTGAATCTGCTCCCTCTCTGGTTGGCAGATCTTCCACCGTCTCTGA
TTCGTCCATTTATGATTTTTTACAGAGTCCATACTCATTCATGTCTCATGATACTTCAAACCTTGTTTTAGTCTCAGATCTACTCAATGAGGACAATTACCTCACTTGGA
GTCGCTCAATGCGTCTGGGTTTATCGATCAGAAACAAGCTTGGTTTCGTTGATGGATCGATTAAAAAACTCACAGGTCCTCTGCTCCAATCTTGGATTCGAAGTAACAAC
ATAGTCATCGCCTAGATTCTCAACTCGGTTTCGAAGGAAATTTCTTCGAGCATTCTATTCTCTAAAAATGCTCATGCTATTTGGCTAGATCTAAAAGATCGATTTCAACG
CAGACATGGACCTCGCATATATCAATTGAAGAGTGATCCTGCCGTTCTCACTCAAGGTCAGCAGTCTGTATCGTTTTATTTCTCCAAACTCAAGACCATTTGGGATGAAT
TAGATACGTATCGCCTGAATTTTTCTTGTAATCTCTGTTCGTTTGGAGGAACTAAAGCCATCACCGATTTCTTTCAAAATGAATACCTTATGAGTTTCCTAATAGGGTTA
AACGATACATTCGGATCGGCCAGATCTCAAATCCTATTAATGGATCCTATGCGATCGGTGAGTAAGGCATTCACCCTCATAGTTCAAGAAGAGCATCAACACTCAATGCC
TCTTCTTCCCACACCTCCTTCATCTCTGATGCTTTCCGTTTCTCAAACTTCAAACTCTATGAAGTCACAGAACTCTACCACTGTCGGGTCTTCACAATCCACTCGATCAC
GCATAGATTGTTCAGTATGCACTCACTGTGGATTCGTTGGGCACACCATAGATCGTTGTTATAAAATCCATGGTTGCCCCCCTGGGTTCAAGTCCAAGAATGCACGGGAT
GTGACTTCTACATGGCATTCCTCGGCTGCTCCTTCAAATGTGGCATTAGCCACAACACCCTCACGTTAAGATATTCGAGACTCTACAATTGCACAGTGCCAAAATATTCT
TTCTATGTTGCAGACGACTCTTGCCACAACACAATCTTCATCTAAGTCTTCTCGTATCATGTTGCATGACAAGTGCACTATGAAGATGATTGGCAGGGGTAGCTTACATG
ATGGCTTGTATGTACTGCACAACACTCATTCTGAAATTGTGGCATCAGTAAAGACAGTTTCTGCAACAACATGGCACGAGAGGCTTGGTCACCCTTCTTTTTCTCGATTA
AATGTACTTAAGGATAGTCTTTGTTTTGATTCTTGTAAGTCTCTACATGATATACCATGTGAGATATGTCCTTTTTCAAAACAAAAGAAGCTATCATACGAATGCAATAA
CAATTTGTCTTTGAATATCTTTGGTCTTATTCATGCTGACACTTGAGGCCTTTTTTCGGTTGCCTCTACTAACAGA
Protein sequenceShow/hide protein sequence
MSFLIGLNDTFGSARSQILLMDPMRSVSKAFTLIVQEEHQHSMPLLPTPPSSLMLSVSQTSNSMKSQNSTTVGSSQSTRSRIDCSVCTHCGFVGHTIDRCYKIHGCPPGF
KSKNARDVTSTWHSSAAPSNVALATTPSR