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Sed0012372 (gene) of Chayote v1 genome

Gene IDSed0012372
OrganismSechium edule (Chayote v1)
DescriptionCCHC-type domain-containing protein
Genome locationLG11:7552195..7561651
RNA-Seq ExpressionSed0012372
SyntenySed0012372
Gene Ontology termsGO:0009987 - cellular process (biological process)
GO:0016021 - integral component of membrane (cellular component)
GO:0003676 - nucleic acid binding (molecular function)
GO:0008270 - zinc ion binding (molecular function)
InterPro domainsIPR001878 - Zinc finger, CCHC-type
IPR036875 - Zinc finger, CCHC-type superfamily


Homology Show/hide homology
GenBank top hitse value%identityAlignment
ESR45251.1 hypothetical protein CICLE_v10003098mg [Citrus clementina]2.7e-0549.3Show/hide
Query:  MNFGLWQVQVKDVLIQSGLHKALKGRPSGGDSEKSSGDGSSTESSGGSSKGSKNCWECGQPGHMRRNCPNR
        +NFGLWQVQVKDVLIQSGLHKALKG+P             S  S+ GS K +K  WE  +  +  ++  NR
Subjt:  MNFGLWQVQVKDVLIQSGLHKALKGRPSGGDSEKSSGDGSSTESSGGSSKGSKNCWECGQPGHMRRNCPNR

KAF6150548.1 hypothetical protein GIB67_030349 [Kingdonia uniflora]9.9e-0843.43Show/hide
Query:  MNFGLWQVQVKDVLIQSGLHKALKGRP---SGGDSEKSSGDGSSTESSGGSSKGSKNCWECGQPGHMRRNC----PNRASSSKGSGSDADVVSLVWGSG
        +NFGLWQ+ V+D+LIQ GL KALKG+P   +  + + S    S  +S     KG+  CW CGQ GH R +C     NRASS++GS +D + ++ V  +G
Subjt:  MNFGLWQVQVKDVLIQSGLHKALKGRP---SGGDSEKSSGDGSSTESSGGSSKGSKNCWECGQPGHMRRNC----PNRASSSKGSGSDADVVSLVWGSG

PON66942.1 Pol-like polyprotein/retrotransposon [Trema orientale]2.7e-0578.95Show/hide
Query:  MNFGLWQVQVKDVLIQSGLHKALKGRPS--GGDSEKSS
        +NFGLWQ+QVKD+LIQSGLHKALKGR +  G DSEKSS
Subjt:  MNFGLWQVQVKDVLIQSGLHKALKGRPS--GGDSEKSS

XP_022139673.1 uncharacterized protein LOC111010521 [Momordica charantia]7.4e-1181.13Show/hide
Query:  MNFGLWQVQVKDVLIQSGLHKALKGRPSGGDSEKSSGDGSSTESSGGSSKGSK
        +NFGLWQVQVKDVLIQS LHKALKGRPS G SEK S DG   ESSGGSS+GSK
Subjt:  MNFGLWQVQVKDVLIQSGLHKALKGRPSGGDSEKSSGDGSSTESSGGSSKGSK

XP_022154929.1 uncharacterized protein LOC111022075 [Momordica charantia]1.8e-0976.47Show/hide
Query:  MNFGLWQVQVKDVLIQSGLHKALKGRPSGGDSEKSSGDGSSTESSGGSSKG
        +NFGLWQVQVKDV+IQSGLHKALKGRPS   SEK SGDG   ESS GS +G
Subjt:  MNFGLWQVQVKDVLIQSGLHKALKGRPSGGDSEKSSGDGSSTESSGGSSKG

TrEMBL top hitse value%identityAlignment
A0A2H5QXN2 Uncharacterized protein1.3e-0549.3Show/hide
Query:  MNFGLWQVQVKDVLIQSGLHKALKGRPSGGDSEKSSGDGSSTESSGGSSKGSKNCWECGQPGHMRRNCPNR
        +NFGLWQVQVKDVLIQSGLHKALKG+P             S  S+ GS K +K  WE  +  +  ++  NR
Subjt:  MNFGLWQVQVKDVLIQSGLHKALKGRPSGGDSEKSSGDGSSTESSGGSSKGSKNCWECGQPGHMRRNCPNR

A0A6J1CG82 uncharacterized protein LOC1110105213.6e-1181.13Show/hide
Query:  MNFGLWQVQVKDVLIQSGLHKALKGRPSGGDSEKSSGDGSSTESSGGSSKGSK
        +NFGLWQVQVKDVLIQS LHKALKGRPS G SEK S DG   ESSGGSS+GSK
Subjt:  MNFGLWQVQVKDVLIQSGLHKALKGRPSGGDSEKSSGDGSSTESSGGSSKGSK

A0A6J1DNQ5 uncharacterized protein LOC1110220758.8e-1076.47Show/hide
Query:  MNFGLWQVQVKDVLIQSGLHKALKGRPSGGDSEKSSGDGSSTESSGGSSKG
        +NFGLWQVQVKDV+IQSGLHKALKGRPS   SEK SGDG   ESS GS +G
Subjt:  MNFGLWQVQVKDVLIQSGLHKALKGRPSGGDSEKSSGDGSSTESSGGSSKG

A0A7J7M716 Uncharacterized protein4.8e-0843.43Show/hide
Query:  MNFGLWQVQVKDVLIQSGLHKALKGRP---SGGDSEKSSGDGSSTESSGGSSKGSKNCWECGQPGHMRRNC----PNRASSSKGSGSDADVVSLVWGSG
        +NFGLWQ+ V+D+LIQ GL KALKG+P   +  + + S    S  +S     KG+  CW CGQ GH R +C     NRASS++GS +D + ++ V  +G
Subjt:  MNFGLWQVQVKDVLIQSGLHKALKGRP---SGGDSEKSSGDGSSTESSGGSSKGSKNCWECGQPGHMRRNC----PNRASSSKGSGSDADVVSLVWGSG

V4T6T3 Uncharacterized protein1.3e-0549.3Show/hide
Query:  MNFGLWQVQVKDVLIQSGLHKALKGRPSGGDSEKSSGDGSSTESSGGSSKGSKNCWECGQPGHMRRNCPNR
        +NFGLWQVQVKDVLIQSGLHKALKG+P             S  S+ GS K +K  WE  +  +  ++  NR
Subjt:  MNFGLWQVQVKDVLIQSGLHKALKGRPSGGDSEKSSGDGSSTESSGGSSKGSKNCWECGQPGHMRRNCPNR

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGAATTTTGGCTTGTGGCAAGTACAAGTCAAAGATGTGTTGATACAATCTGGATTACACAAGGCTTTGAAGGGAAGACCAAGTGGTGGTGATTCTGAAAAATCAAGCGG
TGATGGTAGTTCAACTGAGTCCAGTGGTGGTTCCAGCAAAGGTTCTAAGAATTGCTGGGAATGTGGACAACCTGGTCACATGAGAAGAAATTGTCCTAACAGAGCAAGTT
CGTCAAAGGGCTCTGGTTCGGATGCTGACGTGGTCTCTCTCGTTTGGGGATCTGGTGATGCCCTCTGA
mRNA sequenceShow/hide mRNA sequence
ATGAATTTTGGCTTGTGGCAAGTACAAGTCAAAGATGTGTTGATACAATCTGGATTACACAAGGCTTTGAAGGGAAGACCAAGTGGTGGTGATTCTGAAAAATCAAGCGG
TGATGGTAGTTCAACTGAGTCCAGTGGTGGTTCCAGCAAAGGTTCTAAGAATTGCTGGGAATGTGGACAACCTGGTCACATGAGAAGAAATTGTCCTAACAGAGCAAGTT
CGTCAAAGGGCTCTGGTTCGGATGCTGACGTGGTCTCTCTCGTTTGGGGATCTGGTGATGCCCTCTGA
Protein sequenceShow/hide protein sequence
MNFGLWQVQVKDVLIQSGLHKALKGRPSGGDSEKSSGDGSSTESSGGSSKGSKNCWECGQPGHMRRNCPNRASSSKGSGSDADVVSLVWGSGDAL