; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; CuGenDBv2

Sed0012407 (gene) of Chayote v1 genome

Gene IDSed0012407
OrganismSechium edule (Chayote v1)
Descriptionprotein RDM1-like
Genome locationLG12:5919821..5922184
RNA-Seq ExpressionSed0012407
SyntenySed0012407
Gene Ontology termsGO:0044030 - regulation of DNA methylation (biological process)
GO:0000419 - RNA polymerase V complex (cellular component)
InterPro domainsIPR015270 - Protein RDM1, plant
IPR036319 - RDM1 superfamily


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAG6597432.1 Protein RDM1, partial [Cucurbita argyrosperma subsp. sororia]1.6e-8386.78Show/hide
Query:  MKRPMPWNEQVDVMSSGESSSSDSEIGGQNGGLEFKPSTDNFIIPAQDLTSEGMLMKRAEMYQEYMKQIPIPAHRGSVIPFTSWMGLGKSIKQLYCQPLH
        MKRPMPWNEQVDV+SSGESSSSDSEIGGQN G EFKPS D F IPA+++TSEGML+KRAEMYQEYMKQIPIPAHRGSVIPF +WMGLGKSIKQLY QPLH
Subjt:  MKRPMPWNEQVDVMSSGESSSSDSEIGGQNGGLEFKPSTDNFIIPAQDLTSEGMLMKRAEMYQEYMKQIPIPAHRGSVIPFTSWMGLGKSIKQLYCQPLH

Query:  YLTNILLKQWDHLRFGSTDEYKPLDIVIHPSKAEATIWLVEEIHRLTTSHHHVAKLWLSDPMHELYVDSIFPQL
        YLTNI LKQWD LRFGS DEYKPLD +IHPSKAEAT+WLVEEIHR T+SHHHVAKLWLSD MHE+YVDSIFPQL
Subjt:  YLTNILLKQWDHLRFGSTDEYKPLDIVIHPSKAEATIWLVEEIHRLTTSHHHVAKLWLSDPMHELYVDSIFPQL
KAG7028891.1 Protein RDM1 [Cucurbita argyrosperma subsp. argyrosperma]7.0e-8486.78Show/hide
Query:  MKRPMPWNEQVDVMSSGESSSSDSEIGGQNGGLEFKPSTDNFIIPAQDLTSEGMLMKRAEMYQEYMKQIPIPAHRGSVIPFTSWMGLGKSIKQLYCQPLH
        MKRPMPWNEQVDV+SSGESSSSDSEIGGQN G EFKPS D+F IPA+++TSEGML+KRAEMYQEYMKQIPIPAHRGSVIPF +WMGLGKSIKQLY QPLH
Subjt:  MKRPMPWNEQVDVMSSGESSSSDSEIGGQNGGLEFKPSTDNFIIPAQDLTSEGMLMKRAEMYQEYMKQIPIPAHRGSVIPFTSWMGLGKSIKQLYCQPLH

Query:  YLTNILLKQWDHLRFGSTDEYKPLDIVIHPSKAEATIWLVEEIHRLTTSHHHVAKLWLSDPMHELYVDSIFPQL
        YLTNI LKQWD LRFGS DEYKPLD +IHPSKAEAT+WLVEEIHR T+SHHHVAKLWLSD MHE+YVDSIFPQL
Subjt:  YLTNILLKQWDHLRFGSTDEYKPLDIVIHPSKAEATIWLVEEIHRLTTSHHHVAKLWLSDPMHELYVDSIFPQL
XP_022951070.1 protein RDM1-like [Cucurbita moschata]7.0e-8486.78Show/hide
Query:  MKRPMPWNEQVDVMSSGESSSSDSEIGGQNGGLEFKPSTDNFIIPAQDLTSEGMLMKRAEMYQEYMKQIPIPAHRGSVIPFTSWMGLGKSIKQLYCQPLH
        MKRPMPWNEQVDV+SSGESSSSDSEIGGQN G EFKPS D+F IPA+++TSEGML+KRAEMYQEYMKQIPIPAHRGSVIPF +WMGLGKSIKQLY QPLH
Subjt:  MKRPMPWNEQVDVMSSGESSSSDSEIGGQNGGLEFKPSTDNFIIPAQDLTSEGMLMKRAEMYQEYMKQIPIPAHRGSVIPFTSWMGLGKSIKQLYCQPLH

Query:  YLTNILLKQWDHLRFGSTDEYKPLDIVIHPSKAEATIWLVEEIHRLTTSHHHVAKLWLSDPMHELYVDSIFPQL
        YLTNI LKQWD LRFGS DEYKPLD +IHPSKAEAT+WLVEEIHR T+SHHHVAKLWLSD MHE+YVDSIFPQL
Subjt:  YLTNILLKQWDHLRFGSTDEYKPLDIVIHPSKAEATIWLVEEIHRLTTSHHHVAKLWLSDPMHELYVDSIFPQL
XP_022974457.1 protein RDM1-like [Cucurbita maxima]3.5e-8386.21Show/hide
Query:  MKRPMPWNEQVDVMSSGESSSSDSEIGGQNGGLEFKPSTDNFIIPAQDLTSEGMLMKRAEMYQEYMKQIPIPAHRGSVIPFTSWMGLGKSIKQLYCQPLH
        MKRPMPWNEQVDV+SSGESSSSDSEIGGQN G EFKPS D+F IPA+++TSE ML+KRAEMYQEYMKQIPIPA+RGSVIPFT+WMGLGKSIKQLY QPLH
Subjt:  MKRPMPWNEQVDVMSSGESSSSDSEIGGQNGGLEFKPSTDNFIIPAQDLTSEGMLMKRAEMYQEYMKQIPIPAHRGSVIPFTSWMGLGKSIKQLYCQPLH

Query:  YLTNILLKQWDHLRFGSTDEYKPLDIVIHPSKAEATIWLVEEIHRLTTSHHHVAKLWLSDPMHELYVDSIFPQL
        YLTNI LKQWD LRFGS DEYKPLD +IHPSKAEAT+WLVEEIHR T+SHHHVAKLWLSD MHE+YVDSIFPQL
Subjt:  YLTNILLKQWDHLRFGSTDEYKPLDIVIHPSKAEATIWLVEEIHRLTTSHHHVAKLWLSDPMHELYVDSIFPQL
XP_023538686.1 protein RDM1-like [Cucurbita pepo subsp. pepo]3.1e-8486.78Show/hide
Query:  MKRPMPWNEQVDVMSSGESSSSDSEIGGQNGGLEFKPSTDNFIIPAQDLTSEGMLMKRAEMYQEYMKQIPIPAHRGSVIPFTSWMGLGKSIKQLYCQPLH
        MKRPMPWNEQVDV+SSGESSSSDSEIGGQN G EFKPS D+F IPA+++TS+GML+KRAEMYQEYMKQIPIPAHRGSVIPFT+WMGLGKSIKQLY QPLH
Subjt:  MKRPMPWNEQVDVMSSGESSSSDSEIGGQNGGLEFKPSTDNFIIPAQDLTSEGMLMKRAEMYQEYMKQIPIPAHRGSVIPFTSWMGLGKSIKQLYCQPLH

Query:  YLTNILLKQWDHLRFGSTDEYKPLDIVIHPSKAEATIWLVEEIHRLTTSHHHVAKLWLSDPMHELYVDSIFPQL
        YLTNI LKQWD LRFGS DEYKPLD +IHPSKAEAT+WLVEEIHR T+SHHHVAKLWLSD MHE+YVDSIFPQL
Subjt:  YLTNILLKQWDHLRFGSTDEYKPLDIVIHPSKAEATIWLVEEIHRLTTSHHHVAKLWLSDPMHELYVDSIFPQL
TrEMBL top hitse value%identityAlignment
A0A6J1E3H6 protein RDM1-like3.2e-8284.48Show/hide
Query:  MKRPMPWNEQVDVMSSGESSSSDSEIGGQNGGLEFKPSTDNFIIPAQDLTSEGMLMKRAEMYQEYMKQIPIPAHRGSVIPFTSWMGLGKSIKQLYCQPLH
        MKRPMPWNEQVD++SSGESSSSDSEIGGQN G EFKPS D+  IPA+++TSEG+L KRAEMYQEYMKQIPIPAHRGSVIPFT+W+GLGKSIKQLY QPL 
Subjt:  MKRPMPWNEQVDVMSSGESSSSDSEIGGQNGGLEFKPSTDNFIIPAQDLTSEGMLMKRAEMYQEYMKQIPIPAHRGSVIPFTSWMGLGKSIKQLYCQPLH

Query:  YLTNILLKQWDHLRFGSTDEYKPLDIVIHPSKAEATIWLVEEIHRLTTSHHHVAKLWLSDPMHELYVDSIFPQL
        YLTNI LKQWD LRFGS+DEYKPLD +IHPSKAEATIW+VEEIHR T+SHHHVAKLWLSDPMH  YVDSIFPQL
Subjt:  YLTNILLKQWDHLRFGSTDEYKPLDIVIHPSKAEATIWLVEEIHRLTTSHHHVAKLWLSDPMHELYVDSIFPQL
A0A6J1GHM4 protein RDM1-like3.4e-8486.78Show/hide
Query:  MKRPMPWNEQVDVMSSGESSSSDSEIGGQNGGLEFKPSTDNFIIPAQDLTSEGMLMKRAEMYQEYMKQIPIPAHRGSVIPFTSWMGLGKSIKQLYCQPLH
        MKRPMPWNEQVDV+SSGESSSSDSEIGGQN G EFKPS D+F IPA+++TSEGML+KRAEMYQEYMKQIPIPAHRGSVIPF +WMGLGKSIKQLY QPLH
Subjt:  MKRPMPWNEQVDVMSSGESSSSDSEIGGQNGGLEFKPSTDNFIIPAQDLTSEGMLMKRAEMYQEYMKQIPIPAHRGSVIPFTSWMGLGKSIKQLYCQPLH

Query:  YLTNILLKQWDHLRFGSTDEYKPLDIVIHPSKAEATIWLVEEIHRLTTSHHHVAKLWLSDPMHELYVDSIFPQL
        YLTNI LKQWD LRFGS DEYKPLD +IHPSKAEAT+WLVEEIHR T+SHHHVAKLWLSD MHE+YVDSIFPQL
Subjt:  YLTNILLKQWDHLRFGSTDEYKPLDIVIHPSKAEATIWLVEEIHRLTTSHHHVAKLWLSDPMHELYVDSIFPQL
A0A6J1GV10 protein RDM11.1e-8286.21Show/hide
Query:  MKRPMPWNEQVDVMSSGESSSSDSEIGGQNGGLEFKPSTDNFIIPAQDLTSEGMLMKRAEMYQEYMKQIPIPAHRGSVIPFTSWMGLGKSIKQLYCQPLH
        MKRPMPWNEQVDV+SSGESSSSDSE G QN G EFKPS D+F IPA+++T+EGML+KRAEMYQEYMKQI IPA RGSVIPFT+WMGLGKSIKQLY QPLH
Subjt:  MKRPMPWNEQVDVMSSGESSSSDSEIGGQNGGLEFKPSTDNFIIPAQDLTSEGMLMKRAEMYQEYMKQIPIPAHRGSVIPFTSWMGLGKSIKQLYCQPLH

Query:  YLTNILLKQWDHLRFGSTDEYKPLDIVIHPSKAEATIWLVEEIHRLTTSHHHVAKLWLSDPMHELYVDSIFPQL
        YLTNILLKQWD LRFGS DEYKPLD VIHPSKAEAT+WLVEEIHR T+SHHHVAKLWLSDPMHE YVDSIFPQL
Subjt:  YLTNILLKQWDHLRFGSTDEYKPLDIVIHPSKAEATIWLVEEIHRLTTSHHHVAKLWLSDPMHELYVDSIFPQL
A0A6J1IGA1 protein RDM1-like1.7e-8386.21Show/hide
Query:  MKRPMPWNEQVDVMSSGESSSSDSEIGGQNGGLEFKPSTDNFIIPAQDLTSEGMLMKRAEMYQEYMKQIPIPAHRGSVIPFTSWMGLGKSIKQLYCQPLH
        MKRPMPWNEQVDV+SSGESSSSDSEIGGQN G EFKPS D+F IPA+++TSE ML+KRAEMYQEYMKQIPIPA+RGSVIPFT+WMGLGKSIKQLY QPLH
Subjt:  MKRPMPWNEQVDVMSSGESSSSDSEIGGQNGGLEFKPSTDNFIIPAQDLTSEGMLMKRAEMYQEYMKQIPIPAHRGSVIPFTSWMGLGKSIKQLYCQPLH

Query:  YLTNILLKQWDHLRFGSTDEYKPLDIVIHPSKAEATIWLVEEIHRLTTSHHHVAKLWLSDPMHELYVDSIFPQL
        YLTNI LKQWD LRFGS DEYKPLD +IHPSKAEAT+WLVEEIHR T+SHHHVAKLWLSD MHE+YVDSIFPQL
Subjt:  YLTNILLKQWDHLRFGSTDEYKPLDIVIHPSKAEATIWLVEEIHRLTTSHHHVAKLWLSDPMHELYVDSIFPQL
A0A6J1INZ9 protein RDM1-like1.1e-8286.21Show/hide
Query:  MKRPMPWNEQVDVMSSGESSSSDSEIGGQNGGLEFKPSTDNFIIPAQDLTSEGMLMKRAEMYQEYMKQIPIPAHRGSVIPFTSWMGLGKSIKQLYCQPLH
        MKRPMPWNEQVDV+SSGESSSSDSE G QN G EFKPS D+F IPA+++T+EGML+KRAEMYQEYMKQI IPA RGSVIPFT+WMGLGKSIKQLY QPLH
Subjt:  MKRPMPWNEQVDVMSSGESSSSDSEIGGQNGGLEFKPSTDNFIIPAQDLTSEGMLMKRAEMYQEYMKQIPIPAHRGSVIPFTSWMGLGKSIKQLYCQPLH

Query:  YLTNILLKQWDHLRFGSTDEYKPLDIVIHPSKAEATIWLVEEIHRLTTSHHHVAKLWLSDPMHELYVDSIFPQL
        YLTNILLKQWD LRFGS DEYKPLD VIHPSKAEAT+WLVEEIHR T+SHHHVAKLWLSDPMHE YVDSIFPQL
Subjt:  YLTNILLKQWDHLRFGSTDEYKPLDIVIHPSKAEATIWLVEEIHRLTTSHHHVAKLWLSDPMHELYVDSIFPQL
SwissProt top hitse value%identityAlignment
Q9LUJ3 Protein RDM11.7e-4857.06Show/hide
Query:  VDVMSSGESSSSDSEIGGQNGGLEFKPSTDNFIIPAQDLTSEGMLMKRAEMYQEYMKQIPIPAHRGSVIPFTSWMGLGKSIKQLYCQPLHYLTNILLKQW
        +++  SG+S SSD +    +G   F P   +     +D+  EG L++RAEMYQ+YMKQ+PIP +RGS+IPFTSW+GL  S+KQLY QPLHYLTN+LL++W
Subjt:  VDVMSSGESSSSDSEIGGQNGGLEFKPSTDNFIIPAQDLTSEGMLMKRAEMYQEYMKQIPIPAHRGSVIPFTSWMGLGKSIKQLYCQPLHYLTNILLKQW

Query:  DHLRFGSTDEYKPLDIVIHPSKAEATIWLVEEIHRLTTSHHHVAKLWLSDPMHELYVDSIFPQ
        D  RFG+  E + LD +IHP+KAEATIWLVEEIHRLT SH H+A LW SDPM+  ++D IFP+
Subjt:  DHLRFGSTDEYKPLDIVIHPSKAEATIWLVEEIHRLTTSHHHVAKLWLSDPMHELYVDSIFPQ
Arabidopsis top hitse value%identityAlignment
AT3G22680.1 RNA-DIRECTED DNA METHYLATION 11.2e-4957.06Show/hide
Query:  VDVMSSGESSSSDSEIGGQNGGLEFKPSTDNFIIPAQDLTSEGMLMKRAEMYQEYMKQIPIPAHRGSVIPFTSWMGLGKSIKQLYCQPLHYLTNILLKQW
        +++  SG+S SSD +    +G   F P   +     +D+  EG L++RAEMYQ+YMKQ+PIP +RGS+IPFTSW+GL  S+KQLY QPLHYLTN+LL++W
Subjt:  VDVMSSGESSSSDSEIGGQNGGLEFKPSTDNFIIPAQDLTSEGMLMKRAEMYQEYMKQIPIPAHRGSVIPFTSWMGLGKSIKQLYCQPLHYLTNILLKQW

Query:  DHLRFGSTDEYKPLDIVIHPSKAEATIWLVEEIHRLTTSHHHVAKLWLSDPMHELYVDSIFPQ
        D  RFG+  E + LD +IHP+KAEATIWLVEEIHRLT SH H+A LW SDPM+  ++D IFP+
Subjt:  DHLRFGSTDEYKPLDIVIHPSKAEATIWLVEEIHRLTTSHHHVAKLWLSDPMHELYVDSIFPQ

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGAAAAGACCAATGCCGTGGAATGAACAAGTAGATGTTATGTCATCAGGGGAATCTTCTTCCTCTGACTCAGAAATAGGAGGACAAAATGGTGGATTGGAGTTCAAACC
CTCCACTGACAATTTCATAATCCCTGCCCAAGATTTGACATCTGAGGGTATGTTGATGAAAAGGGCGGAAATGTATCAAGAATATATGAAACAGATCCCAATCCCAGCAC
ACCGTGGTTCTGTAATACCATTTACATCATGGATGGGGCTAGGAAAATCTATAAAGCAGCTTTATTGCCAGCCTTTGCATTACCTGACTAACATTCTACTTAAACAGTGG
GATCACTTAAGGTTCGGAAGCACGGATGAATACAAGCCATTGGATATCGTAATTCACCCGAGTAAAGCTGAAGCAACCATATGGCTGGTTGAAGAGATTCATAGGCTCAC
CACATCACATCATCATGTTGCTAAACTCTGGTTATCAGATCCAATGCACGAATTGTATGTTGACTCCATTTTCCCCCAACTATGA
mRNA sequenceShow/hide mRNA sequence
GAAAGCCTTTGGAAGCATTGCGAGAAGATCTGGTCTCTCAAAATTGGAGCTGGTTGGATTCATTACTGAGCTCTACGGCCTATTCCTCAACAAACCCACATCACAAAAAC
ACTCAGCTTCAGTTTCAGCTTCAACTTTCCGATTCAAAGCTCTTTGCTTTACGGAGAATTTCAATCTTTACCAAATGAAAAGACCAATGCCGTGGAATGAACAAGTAGAT
GTTATGTCATCAGGGGAATCTTCTTCCTCTGACTCAGAAATAGGAGGACAAAATGGTGGATTGGAGTTCAAACCCTCCACTGACAATTTCATAATCCCTGCCCAAGATTT
GACATCTGAGGGTATGTTGATGAAAAGGGCGGAAATGTATCAAGAATATATGAAACAGATCCCAATCCCAGCACACCGTGGTTCTGTAATACCATTTACATCATGGATGG
GGCTAGGAAAATCTATAAAGCAGCTTTATTGCCAGCCTTTGCATTACCTGACTAACATTCTACTTAAACAGTGGGATCACTTAAGGTTCGGAAGCACGGATGAATACAAG
CCATTGGATATCGTAATTCACCCGAGTAAAGCTGAAGCAACCATATGGCTGGTTGAAGAGATTCATAGGCTCACCACATCACATCATCATGTTGCTAAACTCTGGTTATC
AGATCCAATGCACGAATTGTATGTTGACTCCATTTTCCCCCAACTATGATGGCTGCTCTCTGTGAAGTTCTGGTCTGTGTTGATATTATAACATATTTCTAGAAGGCTAA
CTGGTCATTGACAATGTGAATTGTAATAGAAACAACATAGTTCTTTTGTCACACTGCTCTTCAATATGTAGGTTTCTTATCAACTGACAGAGAACATGCTCTAGTAATTT
CTTCTGTCCATTCTTGCTGTCTGTCTGTGAAGTTGTTTATTGCATTTTACCTTTGTAGCTTACAGATAGAAAAGCAGATTTAAGTGTTTTGGGAAG
Protein sequenceShow/hide protein sequence
MKRPMPWNEQVDVMSSGESSSSDSEIGGQNGGLEFKPSTDNFIIPAQDLTSEGMLMKRAEMYQEYMKQIPIPAHRGSVIPFTSWMGLGKSIKQLYCQPLHYLTNILLKQW
DHLRFGSTDEYKPLDIVIHPSKAEATIWLVEEIHRLTTSHHHVAKLWLSDPMHELYVDSIFPQL