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Sed0012423 (gene) of Chayote v1 genome

Gene IDSed0012423
OrganismSechium edule (Chayote v1)
DescriptionRAB GTPase homolog A5B
Genome locationLG02:47943441..47944772
RNA-Seq ExpressionSed0012423
SyntenySed0012423
Gene Ontology termsGO:0006886 - intracellular protein transport (biological process)
GO:0005634 - nucleus (cellular component)
GO:0012505 - endomembrane system (cellular component)
GO:0016021 - integral component of membrane (cellular component)
GO:0003924 - GTPase activity (molecular function)
GO:0005525 - GTP binding (molecular function)
GO:0046983 - protein dimerization activity (molecular function)
InterPro domainsNA


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAG5252080.1 ras-related protein [Salix suchowensis]1.7e-1584.75Show/hide
Query:  EHQSLAEGEGLLFFMETSALDSTDVKKAFEIVIREIDNNVTRKVLHSDTYKAELSINRV
        E +SLAE EG LFFMETSALDST+VKKAFEIVIREI NNV+RKVL+SDTYKAELS+NRV
Subjt:  EHQSLAEGEGLLFFMETSALDSTDVKKAFEIVIREIDNNVTRKVLHSDTYKAELSINRV

KAG6787284.1 hypothetical protein POTOM_008923 [Populus tomentosa]1.7e-1584.75Show/hide
Query:  EHQSLAEGEGLLFFMETSALDSTDVKKAFEIVIREIDNNVTRKVLHSDTYKAELSINRV
        E +SLAE EG LFFMETSALDST+VKKAFEIVIREI NNV+RKVL+SDTYKAELS+NRV
Subjt:  EHQSLAEGEGLLFFMETSALDSTDVKKAFEIVIREIDNNVTRKVLHSDTYKAELSINRV

OMP07487.1 Small GTPase superfamily [Corchorus olitorius]1.3e-1579.03Show/hide
Query:  EHQSLAEGEGLLFFMETSALDSTDVKKAFEIVIREIDNNVTRKVLHSDTYKAELSINRVFSF
        E +SLAE EG LFFMETSALDST+VKKAFE+VIREI NNV+RKVL+SDTYKAEL++NRV +F
Subjt:  EHQSLAEGEGLLFFMETSALDSTDVKKAFEIVIREIDNNVTRKVLHSDTYKAELSINRVFSF

PON66894.1 Small GTPase superfamily, Ras type [Parasponia andersonii]1.3e-1584.75Show/hide
Query:  EHQSLAEGEGLLFFMETSALDSTDVKKAFEIVIREIDNNVTRKVLHSDTYKAELSINRV
        E +SLAE EG LFFMETSALDST+VKKAFEIVIREI NNV+RKVL+SDTYKAELS+NRV
Subjt:  EHQSLAEGEGLLFFMETSALDSTDVKKAFEIVIREIDNNVTRKVLHSDTYKAELSINRV

XP_024028551.1 ras-related protein RABA5e [Morus notabilis]1.3e-1584.75Show/hide
Query:  EHQSLAEGEGLLFFMETSALDSTDVKKAFEIVIREIDNNVTRKVLHSDTYKAELSINRV
        E +SLAE EG LFFMETSALDST+VKKAFEIVIREI NNV+RKVL+SDTYKAELS+NRV
Subjt:  EHQSLAEGEGLLFFMETSALDSTDVKKAFEIVIREIDNNVTRKVLHSDTYKAELSINRV

TrEMBL top hitse value%identityAlignment
A0A1R3KK73 Small GTPase superfamily6.1e-1679.03Show/hide
Query:  EHQSLAEGEGLLFFMETSALDSTDVKKAFEIVIREIDNNVTRKVLHSDTYKAELSINRVFSF
        E +SLAE EG LFFMETSALDST+VKKAFE+VIREI NNV+RKVL+SDTYKAEL++NRV +F
Subjt:  EHQSLAEGEGLLFFMETSALDSTDVKKAFEIVIREIDNNVTRKVLHSDTYKAELSINRVFSF

A0A2K2BN63 Uncharacterized protein8.0e-1684.75Show/hide
Query:  EHQSLAEGEGLLFFMETSALDSTDVKKAFEIVIREIDNNVTRKVLHSDTYKAELSINRV
        E +SLAE EG LFFMETSALDST+VKKAFEIVIREI NNV+RKVL+SDTYKAELS+NRV
Subjt:  EHQSLAEGEGLLFFMETSALDSTDVKKAFEIVIREIDNNVTRKVLHSDTYKAELSINRV

A0A2P5D0R3 Small GTPase superfamily, Ras type6.1e-1684.75Show/hide
Query:  EHQSLAEGEGLLFFMETSALDSTDVKKAFEIVIREIDNNVTRKVLHSDTYKAELSINRV
        E +SLAE EG LFFMETSALDST+VKKAFEIVIREI NNV+RKVL+SDTYKAELS+NRV
Subjt:  EHQSLAEGEGLLFFMETSALDSTDVKKAFEIVIREIDNNVTRKVLHSDTYKAELSINRV

A0A4U5MYD5 Ras-related protein RABA5d-like8.0e-1684.75Show/hide
Query:  EHQSLAEGEGLLFFMETSALDSTDVKKAFEIVIREIDNNVTRKVLHSDTYKAELSINRV
        E +SLAE EG LFFMETSALDST+VKKAFEIVIREI NNV+RKVL+SDTYKAELS+NRV
Subjt:  EHQSLAEGEGLLFFMETSALDSTDVKKAFEIVIREIDNNVTRKVLHSDTYKAELSINRV

B9SN17 Uncharacterized protein8.0e-1684.75Show/hide
Query:  EHQSLAEGEGLLFFMETSALDSTDVKKAFEIVIREIDNNVTRKVLHSDTYKAELSINRV
        E +SLAE EG LFFMETSALDST+VKKAFEIVIREI NNV+RKVL+SDTYKAELS+NRV
Subjt:  EHQSLAEGEGLLFFMETSALDSTDVKKAFEIVIREIDNNVTRKVLHSDTYKAELSINRV

SwissProt top hitse value%identityAlignment
P19892 Ras-related protein RABA5e1.6e-1369.49Show/hide
Query:  EHQSLAEGEGLLFFMETSALDSTDVKKAFEIVIREIDNNVTRKVLHSDTYKAELSINRV
        E ++LAE EG LFF+ETSALDST+VK AFE+VI +I NNV+RK L+SDTYK EL++NRV
Subjt:  EHQSLAEGEGLLFFMETSALDSTDVKKAFEIVIREIDNNVTRKVLHSDTYKAELSINRV

P28187 Ras-related protein RABA5c1.1e-1471.19Show/hide
Query:  EHQSLAEGEGLLFFMETSALDSTDVKKAFEIVIREIDNNVTRKVLHSDTYKAELSINRV
        E +SLAE EG LFFMETSALDST+VK AFE+VIREI +N++RK L+SD+YK EL++NRV
Subjt:  EHQSLAEGEGLLFFMETSALDSTDVKKAFEIVIREIDNNVTRKVLHSDTYKAELSINRV

Q9FGK5 Ras-related protein RABA5a4.2e-0659.57Show/hide
Query:  EHQSLAEGEGLLFFMETSALDSTDVKKAFEIVIREIDNNVTRKVLHS
        E ++LAE +G LFFMETSALDS++V  AFE V++EI N ++RKV+ S
Subjt:  EHQSLAEGEGLLFFMETSALDSTDVKKAFEIVIREIDNNVTRKVLHS

Q9SIP0 Ras-related protein RABA5d6.1e-1370Show/hide
Query:  EHQSLAEGEGLLFFMETSALDSTDVKKAFEIVIREIDNNVTRKVLHSDTYKAELSI-NRV
        E ++LAE EG LFFMETSALDST+VK AFE+VIR+I  N++RK L+SDTYK ELS+ NRV
Subjt:  EHQSLAEGEGLLFFMETSALDSTDVKKAFEIVIREIDNNVTRKVLHSDTYKAELSI-NRV

Q9SRS5 Ras-related protein RABA5b5.9e-1676.27Show/hide
Query:  EHQSLAEGEGLLFFMETSALDSTDVKKAFEIVIREIDNNVTRKVLHSDTYKAELSINRV
        E ++LAE EG LFFMETSALD+T+V KAFEIVIREI NNV+RK+L+SD YKAELS+NRV
Subjt:  EHQSLAEGEGLLFFMETSALDSTDVKKAFEIVIREIDNNVTRKVLHSDTYKAELSINRV

Arabidopsis top hitse value%identityAlignment
AT1G05810.1 RAB GTPase homolog A5E1.1e-1469.49Show/hide
Query:  EHQSLAEGEGLLFFMETSALDSTDVKKAFEIVIREIDNNVTRKVLHSDTYKAELSINRV
        E ++LAE EG LFF+ETSALDST+VK AFE+VI +I NNV+RK L+SDTYK EL++NRV
Subjt:  EHQSLAEGEGLLFFMETSALDSTDVKKAFEIVIREIDNNVTRKVLHSDTYKAELSINRV

AT2G31680.1 RAB GTPase homolog A5D4.3e-1470Show/hide
Query:  EHQSLAEGEGLLFFMETSALDSTDVKKAFEIVIREIDNNVTRKVLHSDTYKAELSI-NRV
        E ++LAE EG LFFMETSALDST+VK AFE+VIR+I  N++RK L+SDTYK ELS+ NRV
Subjt:  EHQSLAEGEGLLFFMETSALDSTDVKKAFEIVIREIDNNVTRKVLHSDTYKAELSI-NRV

AT2G43130.1 P-loop containing nucleoside triphosphate hydrolases superfamily protein7.9e-1671.19Show/hide
Query:  EHQSLAEGEGLLFFMETSALDSTDVKKAFEIVIREIDNNVTRKVLHSDTYKAELSINRV
        E +SLAE EG LFFMETSALDST+VK AFE+VIREI +N++RK L+SD+YK EL++NRV
Subjt:  EHQSLAEGEGLLFFMETSALDSTDVKKAFEIVIREIDNNVTRKVLHSDTYKAELSINRV

AT3G07410.1 RAB GTPase homolog A5B4.2e-1776.27Show/hide
Query:  EHQSLAEGEGLLFFMETSALDSTDVKKAFEIVIREIDNNVTRKVLHSDTYKAELSINRV
        E ++LAE EG LFFMETSALD+T+V KAFEIVIREI NNV+RK+L+SD YKAELS+NRV
Subjt:  EHQSLAEGEGLLFFMETSALDSTDVKKAFEIVIREIDNNVTRKVLHSDTYKAELSINRV

AT5G47520.1 RAB GTPase homolog A5A3.0e-0759.57Show/hide
Query:  EHQSLAEGEGLLFFMETSALDSTDVKKAFEIVIREIDNNVTRKVLHS
        E ++LAE +G LFFMETSALDS++V  AFE V++EI N ++RKV+ S
Subjt:  EHQSLAEGEGLLFFMETSALDSTDVKKAFEIVIREIDNNVTRKVLHS


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGTGGCTTGGAGAACATCAGAGCCTCGCAGAAGGCGAAGGGTTGTTGTTCTTCATGGAAACATCAGCTCTAGACTCAACAGATGTTAAAAAGGCTTTCGAGATCGTGAT
CCGAGAAATAGACAACAATGTCACCAGGAAGGTCCTGCACTCTGATACCTACAAAGCAGAATTATCCATCAACCGGGTATTTTCTTTTCACTTCTTTGTTCTCTAG
mRNA sequenceShow/hide mRNA sequence
ATGTGGCTTGGAGAACATCAGAGCCTCGCAGAAGGCGAAGGGTTGTTGTTCTTCATGGAAACATCAGCTCTAGACTCAACAGATGTTAAAAAGGCTTTCGAGATCGTGAT
CCGAGAAATAGACAACAATGTCACCAGGAAGGTCCTGCACTCTGATACCTACAAAGCAGAATTATCCATCAACCGGGTATTTTCTTTTCACTTCTTTGTTCTCTAG
Protein sequenceShow/hide protein sequence
MWLGEHQSLAEGEGLLFFMETSALDSTDVKKAFEIVIREIDNNVTRKVLHSDTYKAELSINRVFSFHFFVL